Error message

Warning: shell_exec(): Cannot execute a blank command in include() (line 59 of /var/www/marimba/sites/default/modules/tripal_cvterm/theme/templates/tripal_feature_cvterm.tpl.php).

TCONS_00001555 (transcript) - C. hemisphaerica

Overview
NameTCONS_00001555
Unique NameTCONS_00001555
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length918

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00001555 ID=TCONS_00001555|Name=TCONS_00001555|organism=Clytia hemisphaerica|type=transcript|length=918bp
TTGTGATCCTTACGTCAAAGAATGCAAGTTGTCCCCTTTGCCAAAAACTT
CTGGCTGACACGTCAAGTCGGGCTTCGTCTGTTTTGTTGGAGCTGTTTGG
TAGCGATTCTCCAGTTAGAGGTTGTAGGTGAGGTTCGATGGAGACGTCAG
TGTGTACTTGTGAAAGTAGGTTGGCCAAGAGGTTTATCATCTCGTCATGG
CGTTGGTAGATGAAACCTCCTTTCGGACACGAAAGGGCATGGTCGACATC
GAATCGAAGGCCACATGCACAATTGATCGGAAGGTATTTCGGTGTCCATC
TGTACCTCAAGCAAAGGGCATCAACAAATTCTCTTTTGTTCAGACAGAAA
CCTTCGCTTTCAACCGGTATGATCGTCAACCAGCTCGAAGCACCTTTGCA
AGAAGCGAGTTCGTTTGCTTTTCGCTGCTCAACGCTCATCCTCTCCCTAA
GTACTTTCAACGTATCGTTTTCTCGATCTTCCTTCGACTTGGTGATTTCT
CTCTTGACTTTAGCGTCGTCAGGTATGTCGATGTTGCTTGCATTTTGGTT
CTTTATTCGGCGGGACAGGTTGGAAGTTACTTTCTGTGAGCTGGAGAATT
CTGTTATTGACCACGTGGTAAAGATAGGGATTGAAAGACCGCCTTTTCTT
GGTGGCAGTGATAGTAAAAGGCGCTCATCGGCGGAGCAATGGTGACCATC
GGTGATAGCTGGAATGAATATCGTGTCGAGGATTAGGTCGAAAGGTGCAA
GGTATTGGCGCATATCAGGGATTGTTCGGATGTGGTATGTGAGTTTGTGC
TTGAAGCCAGCGGTGAAAGCTACGTAGGCGGATTGCGGTTCGGACTTGGC
AATATCACACAGTACTTTTAGCTGAGAGCACCACTGTTGGACAAGCCCGT
TCACGTATTCATCTTTNN
Run BLAST on NCBI

protein sequence of TCONS_00001555-protein

>TCONS_00001555-protein ID=TCONS_00001555-protein|Name=TCONS_00001555-protein|organism=Clytia hemisphaerica|type=polypeptide|length=305bp
KDEYVNGLVQQWCSQLKVLCDIAKSEPQSAYVAFTAGFKHKLTYHIRTIP
DMRQYLAPFDLILDTIFIPAITDGHHCSADERLLLSLPPRKGGLSIPIFT
TWSITEFSSSQKVTSNLSRRIKNQNASNIDIPDDAKVKREITKSKEDREN
DTLKVLRERMSVEQRKANELASCKGASSWLTIIPVESEGFCLNKREFVDA
LCLRYRWTPKYLPINCACGLRFDVDHALSCPKGGFIYQRHDEMINLLANL
LSQVHTDVSIEPHLQPLTGESLPNSSNKTDEARLDVSARSFWQRGQLAFF
DVRIT
Run BLAST on NCBI

transcript from alignment at sc0000010:1067276..1068193

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00001555 ID=TCONS_00001555|Name=TCONS_00001555|organism=Clytia hemisphaerica|type=transcript|length=918bp|location=Sequence derived from alignment at sc0000010:1067276..1068193 (Clytia hemisphaerica)
NNAAAGATGAATACGTGAACGGGCTTGTCCAACAGTGGTGCTCTCAGCTA AAAGTACTGTGTGATATTGCCAAGTCCGAACCGCAATCCGCCTACGTAGC TTTCACCGCTGGCTTCAAGCACAAACTCACATACCACATCCGAACAATCC CTGATATGCGCCAATACCTTGCACCTTTCGACCTAATCCTCGACACGATA TTCATTCCAGCTATCACCGATGGTCACCATTGCTCCGCCGATGAGCGCCT TTTACTATCACTGCCACCAAGAAAAGGCGGTCTTTCAATCCCTATCTTTA CCACGTGGTCAATAACAGAATTCTCCAGCTCACAGAAAGTAACTTCCAAC CTGTCCCGCCGAATAAAGAACCAAAATGCAAGCAACATCGACATACCTGA CGACGCTAAAGTCAAGAGAGAAATCACCAAGTCGAAGGAAGATCGAGAAA ACGATACGTTGAAAGTACTTAGGGAGAGGATGAGCGTTGAGCAGCGAAAA GCAAACGAACTCGCTTCTTGCAAAGGTGCTTCGAGCTGGTTGACGATCAT ACCGGTTGAAAGCGAAGGTTTCTGTCTGAACAAAAGAGAATTTGTTGATG CCCTTTGCTTGAGGTACAGATGGACACCGAAATACCTTCCGATCAATTGT GCATGTGGCCTTCGATTCGATGTCGACCATGCCCTTTCGTGTCCGAAAGG AGGTTTCATCTACCAACGCCATGACGAGATGATAAACCTCTTGGCCAACC TACTTTCACAAGTACACACTGACGTCTCCATCGAACCTCACCTACAACCT CTAACTGGAGAATCGCTACCAAACAGCTCCAACAAAACAGACGAAGCCCG ACTTGACGTGTCAGCCAGAAGTTTTTGGCAAAGGGGACAACTTGCATTCT TTGACGTAAGGATCACAA

Coding sequence (CDS) from alignment at sc0000010:1067276..1068193

>TCONS_00001555 ID=TCONS_00001555|Name=TCONS_00001555|organism=Clytia hemisphaerica|type=CDS|length=915bp|location=Sequence derived from alignment at sc0000010:1067276..1068193 (Clytia hemisphaerica)
AAAGATGAATACGTGAACGGGCTTGTCCAACAGTGGTGCTCTCAGCTAAA
AGTACTGTGTGATATTGCCAAGTCCGAACCGCAATCCGCCTACGTAGCTT
TCACCGCTGGCTTCAAGCACAAACTCACATACCACATCCGAACAATCCCT
GATATGCGCCAATACCTTGCACCTTTCGACCTAATCCTCGACACGATATT
CATTCCAGCTATCACCGATGGTCACCATTGCTCCGCCGATGAGCGCCTTT
TACTATCACTGCCACCAAGAAAAGGCGGTCTTTCAATCCCTATCTTTACC
ACGTGGTCAATAACAGAATTCTCCAGCTCACAGAAAGTAACTTCCAACCT
GTCCCGCCGAATAAAGAACCAAAATGCAAGCAACATCGACATACCTGACG
ACGCTAAAGTCAAGAGAGAAATCACCAAGTCGAAGGAAGATCGAGAAAAC
GATACGTTGAAAGTACTTAGGGAGAGGATGAGCGTTGAGCAGCGAAAAGC
AAACGAACTCGCTTCTTGCAAAGGTGCTTCGAGCTGGTTGACGATCATAC
CGGTTGAAAGCGAAGGTTTCTGTCTGAACAAAAGAGAATTTGTTGATGCC
CTTTGCTTGAGGTACAGATGGACACCGAAATACCTTCCGATCAATTGTGC
ATGTGGCCTTCGATTCGATGTCGACCATGCCCTTTCGTGTCCGAAAGGAG
GTTTCATCTACCAACGCCATGACGAGATGATAAACCTCTTGGCCAACCTA
CTTTCACAAGTACACACTGACGTCTCCATCGAACCTCACCTACAACCTCT
AACTGGAGAATCGCTACCAAACAGCTCCAACAAAACAGACGAAGCCCGAC
TTGACGTGTCAGCCAGAAGTTTTTGGCAAAGGGGACAACTTGCATTCTTT
GACGTAAGGATCACA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000814XLOC_000814Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001555-proteinTCONS_00001555-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001555-exon-sc0000010-1491911889:1067276..1068193TCONS_00001555-exon-sc0000010-1491911889:1067276..1068193Clytia hemisphaericaexon
TCONS_00001555-exon-sc0000010-1510915933:1067276..1068193TCONS_00001555-exon-sc0000010-1510915933:1067276..1068193Clytia hemisphaericaexon
TCONS_00001555-exon-sc0000010-1575043694:1067276..1068193TCONS_00001555-exon-sc0000010-1575043694:1067276..1068193Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000010supercontigsc0000010:1067276..1068193 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
5.45715 5.5422 3.39808 3.53475 8.26167 8.99793 10.5096 12.6667 5.2672 5.98675 3.71877 5.05004 5.18393 5.55195 3.86705 7.19266 5.31011 5.30097 3.37027 2.25121 3.04999 3.08328 2.5637 3.73193 7.16283 9.11588 2.50254 2.81551 1.68218 0.900621
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00001555 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top