TCONS_00001554 (transcript) - C. hemisphaerica

Overview
NameTCONS_00001554
Unique NameTCONS_00001554
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length737

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00001554 ID=TCONS_00001554|Name=TCONS_00001554|organism=Clytia hemisphaerica|type=transcript|length=737bp
NATGTCGGTAccttcaaaagtttcacgggcCTTCTCAAGCTTGCTTTCTT
TGACGATGAGCCACGATTTCGAAGGCTCCGGGTAGTAGCCAAAGGATGGA
CGAAAAGAAACGACTTTTTTCCACCAATCTCGGACGCGATCGAGTTTACC
TGCACCACCCAAATCGTCAGCAAAGGCTACCTGCTGCACCGACTCGTTGT
TGTTGATAGCATCCATAAGTGGTAATATACCAATGGCGTACGATGGCATT
GACATTGGGTCGCCTTGCGTGGTTCCTTCAGTTGATGAGATTTCTAGTCC
TCTCTGTACAAATAAGCGCGAAGGAACTTTGTAACAGTTCGAAACATATG
TTGCCAAGACGGGACAAAGATACGGTATATTGTGCAGAAGGACCTTTCGA
TTGATTGAATTGAATGCATTCCTGGCGCCAACAAGAAGAAGAGCATCGGT
CTCTTCTTCTTCGAAGATCTCCCTCATGGCGTGTACTGCTGCTTCACATC
CTGATTTCTGTCCAGCACACAGCTGCAGATCACCAGAGCTTTCGAGGATG
TTTGGTTTGATGACAGAAATGACCGCTTTGCCCACTATTCGACGAAGTAC
TTCACCAATACCAATCGGTCTTACTCCTGGAGATTTGTCGAGAGGGATTA
AACGACAAGATGTGTATGCTTCGAGACTTGACGAGGTACCTTCTGTTTCA
ATATTCTCTCTGCAAAGTTTTTTAGCGAATACCACCA
Run BLAST on NCBI

protein sequence of TCONS_00001554-protein

>TCONS_00001554-protein ID=TCONS_00001554-protein|Name=TCONS_00001554-protein|organism=Clytia hemisphaerica|type=polypeptide|length=245bp
VVFAKKLCRENIETEGTSSSLEAYTSCRLIPLDKSPGVRPIGIGEVLRRI
VGKAVISVIKPNILESSGDLQLCAGQKSGCEAAVHAMREIFEEEETDALL
LVGARNAFNSINRKVLLHNIPYLCPVLATYVSNCYKVPSRLFVQRGLEIS
STEGTTQGDPMSMPSYAIGILPLMDAINNNESVQQVAFADDLGGAGKLDR
VRDWWKKVVSFRPSFGYYPEPSKSWLIVKESKLEKARETFEGTDX
Run BLAST on NCBI

transcript from alignment at sc0000010:1066371..1067107

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00001554 ID=TCONS_00001554|Name=TCONS_00001554|organism=Clytia hemisphaerica|type=transcript|length=737bp|location=Sequence derived from alignment at sc0000010:1066371..1067107 (Clytia hemisphaerica)
TGGTGGTATTCGCTAAAAAACTTTGCAGAGAGAATATTGAAACAGAAGGT
ACCTCGTCAAGTCTCGAAGCATACACATCTTGTCGTTTAATCCCTCTCGA
CAAATCTCCAGGAGTAAGACCGATTGGTATTGGTGAAGTACTTCGTCGAA
TAGTGGGCAAAGCGGTCATTTCTGTCATCAAACCAAACATCCTCGAAAGC
TCTGGTGATCTGCAGCTGTGTGCTGGACAGAAATCAGGATGTGAAGCAGC
AGTACACGCCATGAGGGAGATCTTCGAAGAAGAAGAGACCGATGCTCTTC
TTCTTGTTGGCGCCAGGAATGCATTCAATTCAATCAATCGAAAGGTCCTT
CTGCACAATATACCGTATCTTTGTCCCGTCTTGGCAACATATGTTTCGAA
CTGTTACAAAGTTCCTTCGCGCTTATTTGTACAGAGAGGACTAGAAATCT
CATCAACTGAAGGAACCACGCAAGGCGACCCAATGTCAATGCCATCGTAC
GCCATTGGTATATTACCACTTATGGATGCTATCAACAACAACGAGTCGGT
GCAGCAGGTAGCCTTTGCTGACGATTTGGGTGGTGCAGGTAAACTCGATC
GCGTCCGAGATTGGTGGAAAAAAGTCGTTTCTTTTCGTCCATCCTTTGGC
TACTACCCGGAGCCTTCGAAATCGTGGCTCATCGTCAAAGAAAGCAAGCT
TGAGAAGgcccgtgaaacttttgaaggTACCGACATN

Coding sequence (CDS) from alignment at sc0000010:1066371..1067107

>TCONS_00001554 ID=TCONS_00001554|Name=TCONS_00001554|organism=Clytia hemisphaerica|type=CDS|length=735bp|location=Sequence derived from alignment at sc0000010:1066371..1067107 (Clytia hemisphaerica)
GTGGTATTCGCTAAAAAACTTTGCAGAGAGAATATTGAAACAGAAGGTAC
CTCGTCAAGTCTCGAAGCATACACATCTTGTCGTTTAATCCCTCTCGACA
AATCTCCAGGAGTAAGACCGATTGGTATTGGTGAAGTACTTCGTCGAATA
GTGGGCAAAGCGGTCATTTCTGTCATCAAACCAAACATCCTCGAAAGCTC
TGGTGATCTGCAGCTGTGTGCTGGACAGAAATCAGGATGTGAAGCAGCAG
TACACGCCATGAGGGAGATCTTCGAAGAAGAAGAGACCGATGCTCTTCTT
CTTGTTGGCGCCAGGAATGCATTCAATTCAATCAATCGAAAGGTCCTTCT
GCACAATATACCGTATCTTTGTCCCGTCTTGGCAACATATGTTTCGAACT
GTTACAAAGTTCCTTCGCGCTTATTTGTACAGAGAGGACTAGAAATCTCA
TCAACTGAAGGAACCACGCAAGGCGACCCAATGTCAATGCCATCGTACGC
CATTGGTATATTACCACTTATGGATGCTATCAACAACAACGAGTCGGTGC
AGCAGGTAGCCTTTGCTGACGATTTGGGTGGTGCAGGTAAACTCGATCGC
GTCCGAGATTGGTGGAAAAAAGTCGTTTCTTTTCGTCCATCCTTTGGCTA
CTACCCGGAGCCTTCGAAATCGTGGCTCATCGTCAAAGAAAGCAAGCTTG
AGAAGgcccgtgaaacttttgaaggTACCGACATN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000813XLOC_000813Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001554-exon-sc0000010-1491911889:1066371..1067107TCONS_00001554-exon-sc0000010-1491911889:1066371..1067107Clytia hemisphaericaexon
TCONS_00001554-exon-sc0000010-1510915933:1066371..1067107TCONS_00001554-exon-sc0000010-1510915933:1066371..1067107Clytia hemisphaericaexon
TCONS_00001554-exon-sc0000010-1575043694:1066371..1067107TCONS_00001554-exon-sc0000010-1575043694:1066371..1067107Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001554-proteinTCONS_00001554-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000010supercontigsc0000010:1066371..1067107 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
6.90283	3.50606	4.40356	3.19569	15.4666	12.3622	14.4343	20.0862	9.15786	12.3236	8.7776	7.76808	10.2314	9.79117	7.15294	12.5063	7.06021	9.34201	9.46617	5.04444	3.53437	2.36025	3.99098	4.76584	9.18882	12.4721	3.29336	1.95132	1.57508	1.84298
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000477RT_dom
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00001554 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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