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TCONS_00001545 (transcript) - C. hemisphaerica

Overview
NameTCONS_00001545
Unique NameTCONS_00001545
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length747

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00001545 ID=TCONS_00001545|Name=TCONS_00001545|organism=Clytia hemisphaerica|type=transcript|length=747bp
AAACAATCGAGTTCACAGCTGAATATTCAAAGAAGGAAATTAGCTTTCTA
GACACCATCGTTACCATCAGCGGATCTAAACTAATCACAAGATCATACAA
AAAACCAACAGACAGATCAGCTGATCTCCATAGATATTCCACAATGTCAA
CTGTAAAAGCAAATACGTCTACTAGAATGTCAAATCTGCAAGATCCAATA
CGTCGGTAAAACCGAAACACCCTTCAACGTCCGTTTAAACAACCACAGAA
GCAATGCACTTCATCCAAAGAGGACACCATTCCAGCGTGCAAACACTTCA
ATAAGTTCAATTTACGATCATTGAACAGCTAAGAAACATCGAAGGAAATG
AAAACTCCAATGGAAACTCCAAACCTTAAAACCCAAGGGTTTAAACCAAG
AACTCAACTTAAAAGCGCCCCAAGTCTTTGTTTACACTTCCATTACACGT
CTTAGGAAATATGCTATGCGTCTCTAGTCTCTTTTTAGtttaaagttaat
ttttcaGATAGAGAATTTTTGACGACCTGTTATAAGGCAATTGCAAAATG
GAGACAAATCATGTCATATTCAAAGGGCTATAATTAGAATATCTTTTTAC
AAGCTAATAAAGCTTTATACTGTACTCATTTTTGTATCATCAAATTTCCG
GTATGACTGACAAGTTCCGGCTCTTTGAGTTAGATGACTTTGCTTTTTAT
GAGCGTTTTATTGCTCAAGATAGCGCACAATAGACAATAGATTTGGA
Run BLAST on NCBI

transcript from alignment at sc0000010:934441..935187

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00001545 ID=TCONS_00001545|Name=TCONS_00001545|organism=Clytia hemisphaerica|type=transcript|length=747bp|location=Sequence derived from alignment at sc0000010:934441..935187 (Clytia hemisphaerica)
TCCAAATCTATTGTCTATTGTGCGCTATCTTGAGCAATAAAACGCTCATA AAAAGCAAAGTCATCTAACTCAAAGAGCCGGAACTTGTCAGTCATACCGG AAATTTGATGATACAAAAATGAGTACAGTATAAAGCTTTATTAGCTTGTA AAAAGATATTCTAATTATAGCCCTTTGAATATGACATGATTTGTCTCCAT TTTGCAATTGCCTTATAACAGGTCGTCAAAAATTCTCTATCtgaaaaatt aactttaaaCTAAAAAGAGACTAGAGACGCATAGCATATTTCCTAAGACG TGTAATGGAAGTGTAAACAAAGACTTGGGGCGCTTTTAAGTTGAGTTCTT GGTTTAAACCCTTGGGTTTTAAGGTTTGGAGTTTCCATTGGAGTTTTCAT TTCCTTCGATGTTTCTTAGCTGTTCAATGATCGTAAATTGAACTTATTGA AGTGTTTGCACGCTGGAATGGTGTCCTCTTTGGATGAAGTGCATTGCTTC TGTGGTTGTTTAAACGGACGTTGAAGGGTGTTTCGGTTTTACCGACGTAT TGGATCTTGCAGATTTGACATTCTAGTAGACGTATTTGCTTTTACAGTTG ACATTGTGGAATATCTATGGAGATCAGCTGATCTGTCTGTTGGTTTTTTG TATGATCTTGTGATTAGTTTAGATCCGCTGATGGTAACGATGGTGTCTAG AAAGCTAATTTCCTTCTTTGAATATTCAGCTGTGAACTCGATTGTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000804XLOC_000804Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001545-exon-sc0000010-1491911889:934441..935187TCONS_00001545-exon-sc0000010-1491911889:934441..935187Clytia hemisphaericaexon
TCONS_00001545-exon-sc0000010-1510915933:934441..935187TCONS_00001545-exon-sc0000010-1510915933:934441..935187Clytia hemisphaericaexon
TCONS_00001545-exon-sc0000010-1575043694:934441..935187TCONS_00001545-exon-sc0000010-1575043694:934441..935187Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000010supercontigsc0000010:934441..935187 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0 0.192917 0.522654 0.752382 0 0.140546 0.0847811 0.396855 0.114721 0.141514 0.0683603 0.0439182 1.036 0.812127 0.0812712 0.165893 0.0548485 0.164882 0.560797 0.953605 0.255033 0.191019 0.317482 0.0687403 0 0 0.0979877 0 0.147277 0.223715
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00001545 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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