TCONS_00001544 (transcript) - C. hemisphaerica

Overview
NameTCONS_00001544
Unique NameTCONS_00001544
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1588

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00001544 ID=TCONS_00001544|Name=TCONS_00001544|organism=Clytia hemisphaerica|type=transcript|length=1588bp
GATATCAATGGAGAAAAGAAAGTACTTGATTGGCAAAAAAATGGCGATCA
AAAATCTGCTCATcctgattttactttttacagTGGTCGAGTTTTGTATt
tgcagtaatgatattatcaTGCCTCACAGGCAAACTGATTTCTCAATGCT
CAGCTGCACGGAGATGAGAAATATCACACTCGTATTGAATATTGGATTCT
TTGTTGATGTTTATGATACCACTAATCATAAGTTTGTCCAGTATTTAAAC
GATTTCATAACGAACGAGTATTGTTTTTACGTCAACGTGTACGATAACAG
TGAGGATCGCATGGTTCGCGTACGGAATAGTAACGATTTGTCGAACATCA
TTGAAAGAAATAGTTATCATTTAGAAGTGGGTAAACTGGTGGAACTGGTA
GACCGTTTATACGAAGAGAAAATATTTGGTGATGCCGATGGTATGAAACA
ATCATTTATCGTGATAAACTTTCATATTAACTATTATATAGGATTATTTT
ATTTAAGTCTAAGCAAGATGCAGAATGACAGGAAATGGGATATTATCATT
ATGTTACCGGATCTGGTTGACGAATATAATTTATGGCTAAACTGGCTTCC
ACTTCATCGATATATTCAGATGAACCTTTTAATTGATATTAATCTCATTA
ATCTAATTGACGTTATAAAAAACCCAGATTATGACAGGTATGAAGCAGCG
TATCGGTGGATTTCGTCCAGAAACGACTTGTTTAATTCTTCGTGTTTCGG
TAAGATCAACAAAATAAcctttttggtaaaatattttaGAGAAGCTTTCT
TTCCCATGACATTAGCGGtgttaagaaaagaaaatgatcGTCGAGAGCGA
GAAAAACTGAAACCTTTGAAGATAGTTTTCTACAGTTTCAGGTATATCTC
ACCAATAATTGATTTGAGACGCAAGGCAGGTGGTGAATATGTGGAGTTTG
TAAACGGATGGAATAACCATCATCTTCACAATAATTATGACTAcacgaaa
aacgaaaaagagGTTTTTATTAATGTGATAGATTGGAATGGATTGCATTG
GCTTTGTGTGGAATACAATAAGCCAATACTTTTACTAAACCAAGATTATG
ATTACCGTGAGTTCAAAGAAACTAATGAAAATTGTTACATTCAAGAAATC
ATCAAAACGTTTGGAAGCATGGATGAGCTCTGGGAGCACATCAATCACGA
CATCTGCAGCTCAACAACATAAAAGTTTGTCTCAAGAAGGAAATAATTTG
CAGTCCGTAAAAAACGCATATATAttatattcataaaaaaaattgaaaaa
attttcatgatgaCAATACTCTTatgatattcttaatttttgcatttttg
gtcatttttatcatggacattcttataaagtgtattcttttaaaaaaagc
gtgtaatgatTACACATTATGgagtaaatttatttttgttatcaattttt
gcatttctgatattaccagaacaaaatatatacgaaatttagtatattta
gtatattttagGATAGTTCTTACTTTTGCTCTATGCTTTTTTGCATAGac
ttattttttgtattttttctgaGCTTCTTactaaaccg
Run BLAST on NCBI

protein sequence of TCONS_00001544-protein

>TCONS_00001544-protein ID=TCONS_00001544-protein|Name=TCONS_00001544-protein|organism=Clytia hemisphaerica|type=polypeptide|length=406bp
ISMEKRKYLIGKKMAIKNLLILILLFTVVEFCICSNDIIMPHRQTDFSML
SCTEMRNITLVLNIGFFVDVYDTTNHKFVQYLNDFITNEYCFYVNVYDNS
EDRMVRVRNSNDLSNIIERNSYHLEVGKLVELVDRLYEEKIFGDADGMKQ
SFIVINFHINYYIGLFYLSLSKMQNDRKWDIIIMLPDLVDEYNLWLNWLP
LHRYIQMNLLIDINLINLIDVIKNPDYDRYEAAYRWISSRNDLFNSSCFG
KINKITFLVKYFREAFFPMTLAVLRKENDRREREKLKPLKIVFYSFRYIS
PIIDLRRKAGGEYVEFVNGWNNHHLHNNYDYTKNEKEVFINVIDWNGLHW
LCVEYNKPILLLNQDYDYREFKETNENCYIQEIIKTFGSMDELWEHINHD
ICSSTT
Run BLAST on NCBI

transcript from alignment at sc0000010:915951..917538

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00001544 ID=TCONS_00001544|Name=TCONS_00001544|organism=Clytia hemisphaerica|type=transcript|length=1588bp|location=Sequence derived from alignment at sc0000010:915951..917538 (Clytia hemisphaerica)
cggtttagtAAGAAGCtcagaaaaaatacaaaaaataagtCTATGCAAAA AAGCATAGAGCAAAAGTAAGAACTATCctaaaatatactaaatatactaa atttcgtatatattttgttctggtaatatcagaaatgcaaaaattgataa caaaaataaatttactcCATAATGTGTAatcattacacgctttttttaaa agaatacactttataagaatgtccatgataaaaatgaccaaaaatgcaaa aattaagaatatcatAAGAGTATTGtcatcatgaaaattttttcaatttt ttttatgaatataaTATATATGCGTTTTTTACGGACTGCAAATTATTTCC TTCTTGAGACAAACTTTTATGTTGTTGAGCTGCAGATGTCGTGATTGATG TGCTCCCAGAGCTCATCCATGCTTCCAAACGTTTTGATGATTTCTTGAAT GTAACAATTTTCATTAGTTTCTTTGAACTCACGGTAATCATAATCTTGGT TTAGTAAAAGTATTGGCTTATTGTATTCCACACAAAGCCAATGCAATCCA TTCCAATCTATCACATTAATAAAAACctctttttcgtttttcgtgTAGTC ATAATTATTGTGAAGATGATGGTTATTCCATCCGTTTACAAACTCCACAT ATTCACCACCTGCCTTGCGTCTCAAATCAATTATTGGTGAGATATACCTG AAACTGTAGAAAACTATCTTCAAAGGTTTCAGTTTTTCTCGCTCTCGACg atcattttcttttcttaacaCCGCTAATGTCATGGGAAAGAAAGCTTCTC taaaatattttaccaaaaaggTTATTTTGTTGATCTTACCGAAACACGAA GAATTAAACAAGTCGTTTCTGGACGAAATCCACCGATACGCTGCTTCATA CCTGTCATAATCTGGGTTTTTTATAACGTCAATTAGATTAATGAGATTAA TATCAATTAAAAGGTTCATCTGAATATATCGATGAAGTGGAAGCCAGTTT AGCCATAAATTATATTCGTCAACCAGATCCGGTAACATAATGATAATATC CCATTTCCTGTCATTCTGCATCTTGCTTAGACTTAAATAAAATAATCCTA TATAATAGTTAATATGAAAGTTTATCACGATAAATGATTGTTTCATACCA TCGGCATCACCAAATATTTTCTCTTCGTATAAACGGTCTACCAGTTCCAC CAGTTTACCCACTTCTAAATGATAACTATTTCTTTCAATGATGTTCGACA AATCGTTACTATTCCGTACGCGAACCATGCGATCCTCACTGTTATCGTAC ACGTTGACGTAAAAACAATACTCGTTCGTTATGAAATCGTTTAAATACTG GACAAACTTATGATTAGTGGTATCATAAACATCAACAAAGAATCCAATAT TCAATACGAGTGTGATATTTCTCATCTCCGTGCAGCTGAGCATTGAGAAA TCAGTTTGCCTGTGAGGCAtgataatatcattactgcaaATACAAAACTC GACCActgtaaaaagtaaaatcaggATGAGCAGATTTTTGATCGCCATTT TTTTGCCAATCAAGTACTTTCTTTTCTCCATTGATATC

Coding sequence (CDS) from alignment at sc0000010:915951..917538

>TCONS_00001544 ID=TCONS_00001544|Name=TCONS_00001544|organism=Clytia hemisphaerica|type=CDS|length=1221bp|location=Sequence derived from alignment at sc0000010:915951..917538 (Clytia hemisphaerica)
TTATGTTGTTGAGCTGCAGATGTCGTGATTGATGTGCTCCCAGAGCTCAT
CCATGCTTCCAAACGTTTTGATGATTTCTTGAATGTAACAATTTTCATTA
GTTTCTTTGAACTCACGGTAATCATAATCTTGGTTTAGTAAAAGTATTGG
CTTATTGTATTCCACACAAAGCCAATGCAATCCATTCCAATCTATCACAT
TAATAAAAACctctttttcgtttttcgtgTAGTCATAATTATTGTGAAGA
TGATGGTTATTCCATCCGTTTACAAACTCCACATATTCACCACCTGCCTT
GCGTCTCAAATCAATTATTGGTGAGATATACCTGAAACTGTAGAAAACTA
TCTTCAAAGGTTTCAGTTTTTCTCGCTCTCGACgatcattttcttttctt
aacaCCGCTAATGTCATGGGAAAGAAAGCTTCTCtaaaatattttaccaa
aaaggTTATTTTGTTGATCTTACCGAAACACGAAGAATTAAACAAGTCGT
TTCTGGACGAAATCCACCGATACGCTGCTTCATACCTGTCATAATCTGGG
TTTTTTATAACGTCAATTAGATTAATGAGATTAATATCAATTAAAAGGTT
CATCTGAATATATCGATGAAGTGGAAGCCAGTTTAGCCATAAATTATATT
CGTCAACCAGATCCGGTAACATAATGATAATATCCCATTTCCTGTCATTC
TGCATCTTGCTTAGACTTAAATAAAATAATCCTATATAATAGTTAATATG
AAAGTTTATCACGATAAATGATTGTTTCATACCATCGGCATCACCAAATA
TTTTCTCTTCGTATAAACGGTCTACCAGTTCCACCAGTTTACCCACTTCT
AAATGATAACTATTTCTTTCAATGATGTTCGACAAATCGTTACTATTCCG
TACGCGAACCATGCGATCCTCACTGTTATCGTACACGTTGACGTAAAAAC
AATACTCGTTCGTTATGAAATCGTTTAAATACTGGACAAACTTATGATTA
GTGGTATCATAAACATCAACAAAGAATCCAATATTCAATACGAGTGTGAT
ATTTCTCATCTCCGTGCAGCTGAGCATTGAGAAATCAGTTTGCCTGTGAG
GCAtgataatatcattactgcaaATACAAAACTCGACCActgtaaaaagt
aaaatcaggATGAGCAGATTTTTGATCGCCATTTTTTTGCCAATCAAGTA
CTTTCTTTTCTCCATTGATAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000803XLOC_000803Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001544-proteinTCONS_00001544-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001544-exon-sc0000010-1491911889:915951..917538TCONS_00001544-exon-sc0000010-1491911889:915951..917538Clytia hemisphaericaexon
TCONS_00001544-exon-sc0000010-1510915933:915951..917538TCONS_00001544-exon-sc0000010-1510915933:915951..917538Clytia hemisphaericaexon
TCONS_00001544-exon-sc0000010-1575043694:915951..917538TCONS_00001544-exon-sc0000010-1575043694:915951..917538Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000010supercontigsc0000010:915951..917538 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0771815 0.025088 0.233037 0.0854963 1.68943 1.65626 1.89158 1.84465 0.780472 0.671348 1.69423 0.359817 4.62744 4.62 1.05348 1.52497 0.560085 0.73898 7.05592 7.91621 0.402919 0.181993 0.471972 0.268182 0.441954 0.468389 1.3758 0.677675 0.0856654 0.261838
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00001544 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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