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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00001544 ID=TCONS_00001544|Name=TCONS_00001544|organism=Clytia hemisphaerica|type=transcript|length=1588bp
GATATCAATGGAGAAAAGAAAGTACTTGATTGGCAAAAAAATGGCGATCA
AAAATCTGCTCATcctgattttactttttacagTGGTCGAGTTTTGTATt
tgcagtaatgatattatcaTGCCTCACAGGCAAACTGATTTCTCAATGCT
CAGCTGCACGGAGATGAGAAATATCACACTCGTATTGAATATTGGATTCT
TTGTTGATGTTTATGATACCACTAATCATAAGTTTGTCCAGTATTTAAAC
GATTTCATAACGAACGAGTATTGTTTTTACGTCAACGTGTACGATAACAG
TGAGGATCGCATGGTTCGCGTACGGAATAGTAACGATTTGTCGAACATCA
TTGAAAGAAATAGTTATCATTTAGAAGTGGGTAAACTGGTGGAACTGGTA
GACCGTTTATACGAAGAGAAAATATTTGGTGATGCCGATGGTATGAAACA
ATCATTTATCGTGATAAACTTTCATATTAACTATTATATAGGATTATTTT
ATTTAAGTCTAAGCAAGATGCAGAATGACAGGAAATGGGATATTATCATT
ATGTTACCGGATCTGGTTGACGAATATAATTTATGGCTAAACTGGCTTCC
ACTTCATCGATATATTCAGATGAACCTTTTAATTGATATTAATCTCATTA
ATCTAATTGACGTTATAAAAAACCCAGATTATGACAGGTATGAAGCAGCG
TATCGGTGGATTTCGTCCAGAAACGACTTGTTTAATTCTTCGTGTTTCGG
TAAGATCAACAAAATAAcctttttggtaaaatattttaGAGAAGCTTTCT
TTCCCATGACATTAGCGGtgttaagaaaagaaaatgatcGTCGAGAGCGA
GAAAAACTGAAACCTTTGAAGATAGTTTTCTACAGTTTCAGGTATATCTC
ACCAATAATTGATTTGAGACGCAAGGCAGGTGGTGAATATGTGGAGTTTG
TAAACGGATGGAATAACCATCATCTTCACAATAATTATGACTAcacgaaa
aacgaaaaagagGTTTTTATTAATGTGATAGATTGGAATGGATTGCATTG
GCTTTGTGTGGAATACAATAAGCCAATACTTTTACTAAACCAAGATTATG
ATTACCGTGAGTTCAAAGAAACTAATGAAAATTGTTACATTCAAGAAATC
ATCAAAACGTTTGGAAGCATGGATGAGCTCTGGGAGCACATCAATCACGA
CATCTGCAGCTCAACAACATAAAAGTTTGTCTCAAGAAGGAAATAATTTG
CAGTCCGTAAAAAACGCATATATAttatattcataaaaaaaattgaaaaa
attttcatgatgaCAATACTCTTatgatattcttaatttttgcatttttg
gtcatttttatcatggacattcttataaagtgtattcttttaaaaaaagc
gtgtaatgatTACACATTATGgagtaaatttatttttgttatcaattttt
gcatttctgatattaccagaacaaaatatatacgaaatttagtatattta
gtatattttagGATAGTTCTTACTTTTGCTCTATGCTTTTTTGCATAGac
ttattttttgtattttttctgaGCTTCTTactaaaccg Run BLAST on NCBI protein sequence of TCONS_00001544-protein >TCONS_00001544-protein ID=TCONS_00001544-protein|Name=TCONS_00001544-protein|organism=Clytia hemisphaerica|type=polypeptide|length=406bp
ISMEKRKYLIGKKMAIKNLLILILLFTVVEFCICSNDIIMPHRQTDFSML
SCTEMRNITLVLNIGFFVDVYDTTNHKFVQYLNDFITNEYCFYVNVYDNS
EDRMVRVRNSNDLSNIIERNSYHLEVGKLVELVDRLYEEKIFGDADGMKQ
SFIVINFHINYYIGLFYLSLSKMQNDRKWDIIIMLPDLVDEYNLWLNWLP
LHRYIQMNLLIDINLINLIDVIKNPDYDRYEAAYRWISSRNDLFNSSCFG
KINKITFLVKYFREAFFPMTLAVLRKENDRREREKLKPLKIVFYSFRYIS
PIIDLRRKAGGEYVEFVNGWNNHHLHNNYDYTKNEKEVFINVIDWNGLHW
LCVEYNKPILLLNQDYDYREFKETNENCYIQEIIKTFGSMDELWEHINHD
ICSSTT Run BLAST on NCBI transcript from alignment at sc0000010:915951..917538 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00001544 ID=TCONS_00001544|Name=TCONS_00001544|organism=Clytia hemisphaerica|type=transcript|length=1588bp|location=Sequence derived from alignment at sc0000010:915951..917538 (Clytia hemisphaerica)
cggtttagtAAGAAGCtcagaaaaaatacaaaaaataagtCTATGCAAAA
AAGCATAGAGCAAAAGTAAGAACTATCctaaaatatactaaatatactaa
atttcgtatatattttgttctggtaatatcagaaatgcaaaaattgataa
caaaaataaatttactcCATAATGTGTAatcattacacgctttttttaaa
agaatacactttataagaatgtccatgataaaaatgaccaaaaatgcaaa
aattaagaatatcatAAGAGTATTGtcatcatgaaaattttttcaatttt
ttttatgaatataaTATATATGCGTTTTTTACGGACTGCAAATTATTTCC
TTCTTGAGACAAACTTTTATGTTGTTGAGCTGCAGATGTCGTGATTGATG
TGCTCCCAGAGCTCATCCATGCTTCCAAACGTTTTGATGATTTCTTGAAT
GTAACAATTTTCATTAGTTTCTTTGAACTCACGGTAATCATAATCTTGGT
TTAGTAAAAGTATTGGCTTATTGTATTCCACACAAAGCCAATGCAATCCA
TTCCAATCTATCACATTAATAAAAACctctttttcgtttttcgtgTAGTC
ATAATTATTGTGAAGATGATGGTTATTCCATCCGTTTACAAACTCCACAT
ATTCACCACCTGCCTTGCGTCTCAAATCAATTATTGGTGAGATATACCTG
AAACTGTAGAAAACTATCTTCAAAGGTTTCAGTTTTTCTCGCTCTCGACg
atcattttcttttcttaacaCCGCTAATGTCATGGGAAAGAAAGCTTCTC
taaaatattttaccaaaaaggTTATTTTGTTGATCTTACCGAAACACGAA
GAATTAAACAAGTCGTTTCTGGACGAAATCCACCGATACGCTGCTTCATA
CCTGTCATAATCTGGGTTTTTTATAACGTCAATTAGATTAATGAGATTAA
TATCAATTAAAAGGTTCATCTGAATATATCGATGAAGTGGAAGCCAGTTT
AGCCATAAATTATATTCGTCAACCAGATCCGGTAACATAATGATAATATC
CCATTTCCTGTCATTCTGCATCTTGCTTAGACTTAAATAAAATAATCCTA
TATAATAGTTAATATGAAAGTTTATCACGATAAATGATTGTTTCATACCA
TCGGCATCACCAAATATTTTCTCTTCGTATAAACGGTCTACCAGTTCCAC
CAGTTTACCCACTTCTAAATGATAACTATTTCTTTCAATGATGTTCGACA
AATCGTTACTATTCCGTACGCGAACCATGCGATCCTCACTGTTATCGTAC
ACGTTGACGTAAAAACAATACTCGTTCGTTATGAAATCGTTTAAATACTG
GACAAACTTATGATTAGTGGTATCATAAACATCAACAAAGAATCCAATAT
TCAATACGAGTGTGATATTTCTCATCTCCGTGCAGCTGAGCATTGAGAAA
TCAGTTTGCCTGTGAGGCAtgataatatcattactgcaaATACAAAACTC
GACCActgtaaaaagtaaaatcaggATGAGCAGATTTTTGATCGCCATTT
TTTTGCCAATCAAGTACTTTCTTTTCTCCATTGATATC Coding sequence (CDS) from alignment at sc0000010:915951..917538 >TCONS_00001544 ID=TCONS_00001544|Name=TCONS_00001544|organism=Clytia hemisphaerica|type=CDS|length=1221bp|location=Sequence derived from alignment at sc0000010:915951..917538 (Clytia hemisphaerica)
TTATGTTGTTGAGCTGCAGATGTCGTGATTGATGTGCTCCCAGAGCTCAT
CCATGCTTCCAAACGTTTTGATGATTTCTTGAATGTAACAATTTTCATTA
GTTTCTTTGAACTCACGGTAATCATAATCTTGGTTTAGTAAAAGTATTGG
CTTATTGTATTCCACACAAAGCCAATGCAATCCATTCCAATCTATCACAT
TAATAAAAACctctttttcgtttttcgtgTAGTCATAATTATTGTGAAGA
TGATGGTTATTCCATCCGTTTACAAACTCCACATATTCACCACCTGCCTT
GCGTCTCAAATCAATTATTGGTGAGATATACCTGAAACTGTAGAAAACTA
TCTTCAAAGGTTTCAGTTTTTCTCGCTCTCGACgatcattttcttttctt
aacaCCGCTAATGTCATGGGAAAGAAAGCTTCTCtaaaatattttaccaa
aaaggTTATTTTGTTGATCTTACCGAAACACGAAGAATTAAACAAGTCGT
TTCTGGACGAAATCCACCGATACGCTGCTTCATACCTGTCATAATCTGGG
TTTTTTATAACGTCAATTAGATTAATGAGATTAATATCAATTAAAAGGTT
CATCTGAATATATCGATGAAGTGGAAGCCAGTTTAGCCATAAATTATATT
CGTCAACCAGATCCGGTAACATAATGATAATATCCCATTTCCTGTCATTC
TGCATCTTGCTTAGACTTAAATAAAATAATCCTATATAATAGTTAATATG
AAAGTTTATCACGATAAATGATTGTTTCATACCATCGGCATCACCAAATA
TTTTCTCTTCGTATAAACGGTCTACCAGTTCCACCAGTTTACCCACTTCT
AAATGATAACTATTTCTTTCAATGATGTTCGACAAATCGTTACTATTCCG
TACGCGAACCATGCGATCCTCACTGTTATCGTACACGTTGACGTAAAAAC
AATACTCGTTCGTTATGAAATCGTTTAAATACTGGACAAACTTATGATTA
GTGGTATCATAAACATCAACAAAGAATCCAATATTCAATACGAGTGTGAT
ATTTCTCATCTCCGTGCAGCTGAGCATTGAGAAATCAGTTTGCCTGTGAG
GCAtgataatatcattactgcaaATACAAAACTCGACCActgtaaaaagt
aaaatcaggATGAGCAGATTTTTGATCGCCATTTTTTTGCCAATCAAGTA
CTTTCTTTTCTCCATTGATAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00001544-exon-sc0000010-1491911889:915951..917538 | TCONS_00001544-exon-sc0000010-1491911889:915951..917538 | Clytia hemisphaerica | exon |
| TCONS_00001544-exon-sc0000010-1510915933:915951..917538 | TCONS_00001544-exon-sc0000010-1510915933:915951..917538 | Clytia hemisphaerica | exon |
| TCONS_00001544-exon-sc0000010-1575043694:915951..917538 | TCONS_00001544-exon-sc0000010-1575043694:915951..917538 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000010 | supercontig | sc0000010:915951..917538 . |
Blast
The following BLAST results are available for this feature:
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