Error message

Warning: shell_exec(): Cannot execute a blank command in include() (line 59 of /var/www/marimba/sites/default/modules/tripal_cvterm/theme/templates/tripal_feature_cvterm.tpl.php).

TCONS_00001536 (transcript) - C. hemisphaerica

Overview
NameTCONS_00001536
Unique NameTCONS_00001536
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length168

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00001536 ID=TCONS_00001536|Name=TCONS_00001536|organism=Clytia hemisphaerica|type=transcript|length=168bp
CTCGCCAGTCGAAGAAAGGAGTCTTTTGGAGTTGTTTTCGTCTCGGACAA
ACATCTTCGTTTGAAATCACCAATCAGCtcataattttcatcaaaagagT
TTTGGCGAGTTCCAAGTTTCAATCAGTTTACAGAAACGTGTCTTCACATT
CTTTCTCACGCAGTACCA
Run BLAST on NCBI

transcript from alignment at sc0000010:635918..636085

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00001536 ID=TCONS_00001536|Name=TCONS_00001536|organism=Clytia hemisphaerica|type=transcript|length=168bp|location=Sequence derived from alignment at sc0000010:635918..636085 (Clytia hemisphaerica)
TGGTACTGCGTGAGAAAGAATGTGAAGACACGTTTCTGTAAACTGATTGA AACTTGGAACTCGCCAAAActcttttgatgaaaattatgaGCTGATTGGT GATTTCAAACGAAGATGTTTGTCCGAGACGAAAACAACTCCAAAAGACTC CTTTCTTCGACTGGCGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000795XLOC_000795Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001536-exon-sc0000010-1491911889:635918..636085TCONS_00001536-exon-sc0000010-1491911889:635918..636085Clytia hemisphaericaexon
TCONS_00001536-exon-sc0000010-1510915933:635918..636085TCONS_00001536-exon-sc0000010-1510915933:635918..636085Clytia hemisphaericaexon
TCONS_00001536-exon-sc0000010-1575043694:635918..636085TCONS_00001536-exon-sc0000010-1575043694:635918..636085Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000010supercontigsc0000010:635918..636085 .
Expression
No biomaterial libraries express this feature.
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00001536 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top