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TCONS_00001534 (transcript) - C. hemisphaerica

Overview
NameTCONS_00001534
Unique NameTCONS_00001534
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2090

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00001534 ID=TCONS_00001534|Name=TCONS_00001534|organism=Clytia hemisphaerica|type=transcript|length=2090bp
ttttattattgtTGGCATATACTAATGAAAAAGCCCTAACGACAGCACGT
CGCTTCTGAGTACTTAGAGTATAGTAAGAGAGAGAAGTTTTTCTACTGAA
ATGTTGAAACGTGTTTGAAGTACTATCATTTTTGGCACACCATTTTAACA
GAAGATTACTTGTTTCAAATACTAAACAACAAACGTTGTAAACTtataaa
attggaaaatcatTTCAACGGTTTGAATTGTTTGAAAATGGCTTTATCTA
TTGTTGGAAGAACTGACAATGACAATGATTTGGATGAAGTTGAAGTTGAT
TCTGATTGTGATAGTGATGATCAGCTGGTTATTGATGAAATTGATGAAAC
TGacgaaagaaaaaactttgatCAAGGTCTCCAATTCCCAACAAAGGATG
GTCAAGTTGATTCTAATCTACTATCCAGAGCTGAACTACCTCCTTGTAGG
GATGAAATGGTTCACATTCATCAAATGGTTATTTGTGAAGAAGAAAATCC
AAATAATCTATCAAGCAATCGAATGGCTAGTACTAAGGTTAATAACCAAG
GCAATATAATTTATCGTTATGTTGCTGGTGATGGAAATATTTGCAGAATG
AGTTCAGGTAAGTGTAGCGTGGAAACCCAAACAGAATGTATTACATCTAA
CCAATGTAAAACAATTGCCGCGGATTTCCACCGTGGTGAAAATGGCCCAA
AAGGTGTTGTGGCCTCGCCCGAGCACGTTGGTACTTTTACTCAATTCAGA
AGAGCTTCAAGATCACATTCTAATTCATCAGATGATTCAGGAAACACCAG
ACGAAAATATAAAGATATACTAAAACATGGTAATTCGATGGttgacttga
aaaagaaaaaacgtttAGAGAGAAATAATCACGCGTCCAAGAGATACCAA
GCCAAGCAAAAAGAAGAGGCTGAAAACTTTCTTAAAGTTGAGCGAGAAAT
AGAAGAAAGCGTCAACATTCTAAAACGACAATTGCGAGAGGGCGAGAACG
AGCGAGACCACTTGATCAATTGCATCTATCGAATAATCAGCGAAGAGTTC
TTTAACATAAATAAAGAACAATTTTGTGAGAGCTTTAGTAAACTAGCCAT
ATTTAGAGATCGGGCTATGAGGGAAAGAGATAACGATTCGATCAAGGTTT
TAGATAAGTTATTACAACATGGCGTGGAAATCACCCACCGGTTGAATGAT
GAGCAGCAGAAATTGATCAAATATTATGTGTCTAGTAGTATGTCATACTA
CAAACAAAAATGTGGACAGTAATACACTGTATGGAAATTAAAATCTCTTT
GTAAGAATTTTCATGATGTTCATGACCCAAGTAAGTTTAATATTTTATAA
CAATTTTATAATGTAAATTCGAGGTTCTCTTAAACTCGTAGCTAAACGAA
TTATATTTCAGGGGAAAATTTAACAGAAAGTTTGAAcaattaaaaatact
ttttgacAAGTTAAACATTTTATGtataaattttatgaaacttACCAGTA
TCAATTAGAAACAATTATAAACCGTTGAAAAAATGAGGTTTTGGAGATTA
AGATGAAATACAGAAAAGAGGAACGACTTATTTCTCCTTTCATGGTGCTA
GAAGCCTCTGCAACTCTTATATCGAAAGTTGCAGGTTGCTCGTTTCAGTC
GAAAAACCCTGCTTTTGCATGTTTTGTTTCCCACTTTGTAGAACCTGTAC
ATACAATAATTTTATGTGATAAATATAACCGATATAACTGAAATAAGGAT
ACTTAAAAGTACCTCAGTATTAAGAATGAGGTCTCTAGCActaaaagaca
aaaattttccattttctttttcactttttatcttcattttctgACGTTTC
TTGGAACTACAATATTCTCAAAAGTTACAGTACTCTGAAtgatcttttca
acggtatataatttgttataaaatcaaaacattcaaatcagTGCATACGT
ATTGTAAATGGACTTAAGTTCAACAACGATCTTTCTTTAATTAGGAAGTT
ATCTTTTTTGTCATGTTCACCTTGTAGCACTTATACACAAGCATTGTAAA
CAAAATATTATAACAAATAAACAATGTAAATTCTTGATTC
Run BLAST on NCBI

protein sequence of TCONS_00001534-protein

>TCONS_00001534-protein ID=TCONS_00001534-protein|Name=TCONS_00001534-protein|organism=Clytia hemisphaerica|type=polypeptide|length=344bp
MALSIVGRTDNDNDLDEVEVDSDCDSDDQLVIDEIDETDERKNFDQGLQF
PTKDGQVDSNLLSRAELPPCRDEMVHIHQMVICEEENPNNLSSNRMASTK
VNNQGNIIYRYVAGDGNICRMSSGKCSVETQTECITSNQCKTIAADFHRG
ENGPKGVVASPEHVGTFTQFRRASRSHSNSSDDSGNTRRKYKDILKHGNS
MVDLKKKKRLERNNHASKRYQAKQKEEAENFLKVEREIEESVNILKRQLR
EGENERDHLINCIYRIISEEFFNINKEQFCESFSKLAIFRDRAMRERDND
SIKVLDKLLQHGVEITHRLNDEQQKLIKYYVSSSMSYYKQKCGQ
Run BLAST on NCBI

transcript from alignment at sc0000010:612865..614954

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00001534 ID=TCONS_00001534|Name=TCONS_00001534|organism=Clytia hemisphaerica|type=transcript|length=2090bp|location=Sequence derived from alignment at sc0000010:612865..614954 (Clytia hemisphaerica)
GAATCAAGAATTTACATTGTTTATTTGTTATAATATTTTGTTTACAATGC TTGTGTATAAGTGCTACAAGGTGAACATGACAAAAAAGATAACTTCCTAA TTAAAGAAAGATCGTTGTTGAACTTAAGTCCATTTACAATACGTATGCAc tgatttgaatgttttgattttataacaaattatataccgttgaaaagatc aTTCAGAGTACTGTAACTTTTGAGAATATTGTAGTTCCAAGAAACGTcag aaaatgaagataaaaagtgaaaaagaaaatggaaaatttttgtcttttag TGCTAGAGACCTCATTCTTAATACTGAGGTACTTTTAAGTATCCTTATTT CAGTTATATCGGTTATATTTATCACATAAAATTATTGTATGTACAGGTTC TACAAAGTGGGAAACAAAACATGCAAAAGCAGGGTTTTTCGACTGAAACG AGCAACCTGCAACTTTCGATATAAGAGTTGCAGAGGCTTCTAGCACCATG AAAGGAGAAATAAGTCGTTCCTCTTTTCTGTATTTCATCTTAATCTCCAA AACCTCATTTTTTCAACGGTTTATAATTGTTTCTAATTGATACTGGTaag tttcataaaatttataCATAAAATGTTTAACTTgtcaaaaagtattttta attgTTCAAACTTTCTGTTAAATTTTCCCCTGAAATATAATTCGTTTAGC TACGAGTTTAAGAGAACCTCGAATTTACATTATAAAATTGTTATAAAATA TTAAACTTACTTGGGTCATGAACATCATGAAAATTCTTACAAAGAGATTT TAATTTCCATACAGTGTATTACTGTCCACATTTTTGTTTGTAGTATGACA TACTACTAGACACATAATATTTGATCAATTTCTGCTGCTCATCATTCAAC CGGTGGGTGATTTCCACGCCATGTTGTAATAACTTATCTAAAACCTTGAT CGAATCGTTATCTCTTTCCCTCATAGCCCGATCTCTAAATATGGCTAGTT TACTAAAGCTCTCACAAAATTGTTCTTTATTTATGTTAAAGAACTCTTCG CTGATTATTCGATAGATGCAATTGATCAAGTGGTCTCGCTCGTTCTCGCC CTCTCGCAATTGTCGTTTTAGAATGTTGACGCTTTCTTCTATTTCTCGCT CAACTTTAAGAAAGTTTTCAGCCTCTTCTTTTTGCTTGGCTTGGTATCTC TTGGACGCGTGATTATTTCTCTCTaaacgttttttctttttcaagtcaaC CATCGAATTACCATGTTTTAGTATATCTTTATATTTTCGTCTGGTGTTTC CTGAATCATCTGATGAATTAGAATGTGATCTTGAAGCTCTTCTGAATTGA GTAAAAGTACCAACGTGCTCGGGCGAGGCCACAACACCTTTTGGGCCATT TTCACCACGGTGGAAATCCGCGGCAATTGTTTTACATTGGTTAGATGTAA TACATTCTGTTTGGGTTTCCACGCTACACTTACCTGAACTCATTCTGCAA ATATTTCCATCACCAGCAACATAACGATAAATTATATTGCCTTGGTTATT AACCTTAGTACTAGCCATTCGATTGCTTGATAGATTATTTGGATTTTCTT CTTCACAAATAACCATTTGATGAATGTGAACCATTTCATCCCTACAAGGA GGTAGTTCAGCTCTGGATAGTAGATTAGAATCAACTTGACCATCCTTTGT TGGGAATTGGAGACCTTGatcaaagttttttctttcgtCAGTTTCATCAA TTTCATCAATAACCAGCTGATCATCACTATCACAATCAGAATCAACTTCA ACTTCATCCAAATCATTGTCATTGTCAGTTCTTCCAACAATAGATAAAGC CATTTTCAAACAATTCAAACCGTTGAAatgattttccaattttataAGTT TACAACGTTTGTTGTTTAGTATTTGAAACAAGTAATCTTCTGTTAAAATG GTGTGCCAAAAATGATAGTACTTCAAACACGTTTCAACATTTCAGTAGAA AAACTTCTCTCTCTTACTATACTCTAAGTACTCAGAAGCGACGTGCTGTC GTTAGGGCTTTTTCATTAGTATATGCCAacaataataaaa

Coding sequence (CDS) from alignment at sc0000010:612865..614954

>TCONS_00001534 ID=TCONS_00001534|Name=TCONS_00001534|organism=Clytia hemisphaerica|type=CDS|length=1035bp|location=Sequence derived from alignment at sc0000010:612865..614954 (Clytia hemisphaerica)
TTACTGTCCACATTTTTGTTTGTAGTATGACATACTACTAGACACATAAT
ATTTGATCAATTTCTGCTGCTCATCATTCAACCGGTGGGTGATTTCCACG
CCATGTTGTAATAACTTATCTAAAACCTTGATCGAATCGTTATCTCTTTC
CCTCATAGCCCGATCTCTAAATATGGCTAGTTTACTAAAGCTCTCACAAA
ATTGTTCTTTATTTATGTTAAAGAACTCTTCGCTGATTATTCGATAGATG
CAATTGATCAAGTGGTCTCGCTCGTTCTCGCCCTCTCGCAATTGTCGTTT
TAGAATGTTGACGCTTTCTTCTATTTCTCGCTCAACTTTAAGAAAGTTTT
CAGCCTCTTCTTTTTGCTTGGCTTGGTATCTCTTGGACGCGTGATTATTT
CTCTCTaaacgttttttctttttcaagtcaaCCATCGAATTACCATGTTT
TAGTATATCTTTATATTTTCGTCTGGTGTTTCCTGAATCATCTGATGAAT
TAGAATGTGATCTTGAAGCTCTTCTGAATTGAGTAAAAGTACCAACGTGC
TCGGGCGAGGCCACAACACCTTTTGGGCCATTTTCACCACGGTGGAAATC
CGCGGCAATTGTTTTACATTGGTTAGATGTAATACATTCTGTTTGGGTTT
CCACGCTACACTTACCTGAACTCATTCTGCAAATATTTCCATCACCAGCA
ACATAACGATAAATTATATTGCCTTGGTTATTAACCTTAGTACTAGCCAT
TCGATTGCTTGATAGATTATTTGGATTTTCTTCTTCACAAATAACCATTT
GATGAATGTGAACCATTTCATCCCTACAAGGAGGTAGTTCAGCTCTGGAT
AGTAGATTAGAATCAACTTGACCATCCTTTGTTGGGAATTGGAGACCTTG
atcaaagttttttctttcgtCAGTTTCATCAATTTCATCAATAACCAGCT
GATCATCACTATCACAATCAGAATCAACTTCAACTTCATCCAAATCATTG
TCATTGTCAGTTCTTCCAACAATAGATAAAGCCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000793XLOC_000793Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001534-proteinTCONS_00001534-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001534-exon-sc0000010-1491911889:612865..614954TCONS_00001534-exon-sc0000010-1491911889:612865..614954Clytia hemisphaericaexon
TCONS_00001534-exon-sc0000010-1510915933:612865..614954TCONS_00001534-exon-sc0000010-1510915933:612865..614954Clytia hemisphaericaexon
TCONS_00001534-exon-sc0000010-1575043694:612865..614954TCONS_00001534-exon-sc0000010-1575043694:612865..614954Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000010supercontigsc0000010:612865..614954 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.282917 0.110355 0.512532 0.668577 0.228917 0.160794 2.49764 2.63338 3.05163 4.82335 2.809 2.08519 9.709 7.20393 5.70841 5.20652 2.18048 2.30748 10.466 16.281 4.17604 4.53639 1.90307 2.92948 7.77613 9.0184 16.9398 17.361 2.42839 1.74896
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00001534 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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