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TCONS_00001533 (transcript) - C. hemisphaerica

Overview
NameTCONS_00001533
Unique NameTCONS_00001533
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length824

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00001533 ID=TCONS_00001533|Name=TCONS_00001533|organism=Clytia hemisphaerica|type=transcript|length=824bp
GAACGGAGCAATATTCTAATATTGGTATCACCAATGATTTATATAGTACA
TATAATTTAAAGACCGTGAAGAAAAAGTTCTCAGGATCCAAGATGTTAAG
TTTTTAGCCTTTTCGATTACTGCAGTAATTTGCTTCTGAAATGTGCAATT
ACTGTCCACCAGGATTCCAAGGTCTTTCACAACATCTTTGTTTTCAATCT
CAACACCAGATGGTGATGTATAGCTTGTTTGAGTCTTGATCTCATGGTTC
TTTCCATAGCGCAAGagttcaaattttatatcatttagCTTCATATTGTT
GTCATCCGTCCATTTAAATATTCTATCAAGATCGTTTTGAAGTAGGACAG
CATCTTCAAGAGTTTTGACTTCCTTTGTGGCGCGAGTGTCATCAGCGAAG
GATTCAAGAAAGCTGTGCACCACTTCCTTGTCAATATCCCCAATCAATAT
GAGGAAAATCAAAGGTCCCAAAACACTACCTTGAGGGACTCCTGAAATGA
CCTGTTGTGATTCAGAAGTGACACCATTCACTAGCAGTTAGCACTGATTG
TTTTCTCTCTGTTAGGAAGGACTTTAGCCACTGTAATAATTTTCCATCTA
TTcctagtttctttatttttcgtagGACAATTGAATGGTCTACTTTCTCA
AAAGcctttgaaaaatctaggtACACAACATCCGCATTAGTATCTTCGTC
CAATATATTTAGTATCAGGTCATATTGTTCCAAAAGCTGACTCAAACATG
AACGCCCGCTTCTGAATCCATGTTGATTGGGATTGAACAGATTATTTTCA
TCCATGTGCTTTACAATATGTGCT
Run BLAST on NCBI

protein sequence of TCONS_00001533-protein

>TCONS_00001533-protein ID=TCONS_00001533-protein|Name=TCONS_00001533-protein|organism=Clytia hemisphaerica|type=polypeptide|length=103bp
AHIVKHMDENNLFNPNQHGFRSGRSCLSQLLEQYDLILNILDEDTNADVV
YLDFSKAFEKVDHSIVLRKIKKLGIDGKLLQWLKSFLTERKQSVLTASEW
CHF
Run BLAST on NCBI

transcript from alignment at sc0000010:477998..478821

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00001533 ID=TCONS_00001533|Name=TCONS_00001533|organism=Clytia hemisphaerica|type=transcript|length=824bp|location=Sequence derived from alignment at sc0000010:477998..478821 (Clytia hemisphaerica)
AGCACATATTGTAAAGCACATGGATGAAAATAATCTGTTCAATCCCAATC AACATGGATTCAGAAGCGGGCGTTCATGTTTGAGTCAGCTTTTGGAACAA TATGACCTGATACTAAATATATTGGACGAAGATACTAATGCGGATGTTGT GTacctagatttttcaaaggCTTTTGAGAAAGTAGACCATTCAATTGTCc tacgaaaaataaagaaactaggAATAGATGGAAAATTATTACAGTGGCTA AAGTCCTTCCTAACAGAGAGAAAACAATCAGTGCTAACTGCTAGTGAATG GTGTCACTTCTGAATCACAACAGGTCATTTCAGGAGTCCCTCAAGGTAGT GTTTTGGGACCTTTGATTTTCCTCATATTGATTGGGGATATTGACAAGGA AGTGGTGCACAGCTTTCTTGAATCCTTCGCTGATGACACTCGCGCCACAA AGGAAGTCAAAACTCTTGAAGATGCTGTCCTACTTCAAAACGATCTTGAT AGAATATTTAAATGGACGGATGACAACAATATGAAGctaaatgatataaa atttgaactCTTGCGCTATGGAAAGAACCATGAGATCAAGACTCAAACAA GCTATACATCACCATCTGGTGTTGAGATTGAAAACAAAGATGTTGTGAAA GACCTTGGAATCCTGGTGGACAGTAATTGCACATTTCAGAAGCAAATTAC TGCAGTAATCGAAAAGGCTAAAAACTTAACATCTTGGATCCTGAGAACTT TTTCTTCACGGTCTTTAAATTATATGTACTATATAAATCATTGGTGATAC CAATATTAGAATATTGCTCCGTTC

Coding sequence (CDS) from alignment at sc0000010:477998..478821

>TCONS_00001533 ID=TCONS_00001533|Name=TCONS_00001533|organism=Clytia hemisphaerica|type=CDS|length=312bp|location=Sequence derived from alignment at sc0000010:477998..478821 (Clytia hemisphaerica)
GCACATATTGTAAAGCACATGGATGAAAATAATCTGTTCAATCCCAATCA
ACATGGATTCAGAAGCGGGCGTTCATGTTTGAGTCAGCTTTTGGAACAAT
ATGACCTGATACTAAATATATTGGACGAAGATACTAATGCGGATGTTGTG
TacctagatttttcaaaggCTTTTGAGAAAGTAGACCATTCAATTGTCct
acgaaaaataaagaaactaggAATAGATGGAAAATTATTACAGTGGCTAA
AGTCCTTCCTAACAGAGAGAAAACAATCAGTGCTAACTGCTAGTGAATGG
TGTCACTTCTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000792XLOC_000792Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001533-proteinTCONS_00001533-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001533-exon-sc0000010-1491911889:477998..478821TCONS_00001533-exon-sc0000010-1491911889:477998..478821Clytia hemisphaericaexon
TCONS_00001533-exon-sc0000010-1510915933:477998..478821TCONS_00001533-exon-sc0000010-1510915933:477998..478821Clytia hemisphaericaexon
TCONS_00001533-exon-sc0000010-1575043694:477998..478821TCONS_00001533-exon-sc0000010-1575043694:477998..478821Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000010supercontigsc0000010:477998..478821 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.27258 3.83899 8.09841 6.71981 3.4698 2.92103 3.58931 3.68247 3.20588 2.42871 4.81885 4.75062 3.46122 3.52019 1.93739 2.06255 2.15457 2.51171 1.4024 1.59965 4.29961 3.63717 1.69062 1.6269 2.1184 3.76156 2.86666 2.17468 2.91147 2.03982
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000477RT_dom
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00001533 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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