TCONS_00001528 (transcript) - C. hemisphaerica

Overview
NameTCONS_00001528
Unique NameTCONS_00001528
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length920

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00001528 ID=TCONS_00001528|Name=TCONS_00001528|organism=Clytia hemisphaerica|type=transcript|length=920bp
TCACCAGCAGCTGAAAAGAGTGCACCAGTAGTAGACAATTCTGAGAATGT
AGTCATTGAAACTAAAACTGAAAATGTGAATGGAGATATTGTGATTACTG
AAACGATCACTACGACAACCACAAGTACAGTTGAAGTCGATGATTTAGAC
ATTCCATCATTAGATTCTGGTAATTCAAGCTTAATGGATGATATTACATT
CGAATTAGCTActaaataaagaattttttatACTCATGCTTGGCGCCTGT
ACTATAAAGaatattattttattgtttttttactaCTTCTGCCTACGATG
ATAAGAATTACTGCTTCTCGTATGTTGGTGATATGCCAGACATTGTGGTA
TATGGTGTCACTCATCCCGTCCTGCGCCTGCGACGAGCTATATGCTCTCC
CGCGCAGTTCGAGTGTCACCACTATGCATCATGGTATCTGTGTCTCACGT
GCACAGGACCAGCGGTGTCTGGACAGCGCTGAGTGTTCCAAAttgaaaaa
ggaggaattcctacttcgTAAAGAGTATGACCCATTCCCCAgtggggagg
gctcatatcatatATTGCTTTAAGAAGTTATTCTTTTAAGTTATTCCAAG
CTATTCTCGGACCCGTCTTCTTGACAAGCTGGAAGCTTTTGTCATTCTTA
CAAGTttaaaatgaactttttaatAATACATCATTGACACTATTCTTGAA
AATTATCTCAATCTTTATTTTCGGACAGTGTCCGATCTAAATATTCTTAC
ATCTTATAATATTATTATCCCATGTACATAgattattttatcaattttat
taaaCGTTCAACTCTATAATTATTATCATTTTATTATTACTGTTGTTTTA
CTGTATTTTATCGTCGATCTATTTCAACAGAATATACAATATTATTTTTG
TAACTTCCCTCCTGTCACAA
Run BLAST on NCBI

transcript from alignment at sc0000010:413474..414393

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00001528 ID=TCONS_00001528|Name=TCONS_00001528|organism=Clytia hemisphaerica|type=transcript|length=920bp|location=Sequence derived from alignment at sc0000010:413474..414393 (Clytia hemisphaerica)
TTGTGACAGGAGGGAAGTTACAAAAATAATATTGTATATTCTGTTGAAAT AGATCGACGATAAAATACAGTAAAACAACAGTAATAATAAAATGATAATA ATTATAGAGTTGAACGtttaataaaattgataaaataatcTATGTACATG GGATAATAATATTATAAGATGTAAGAATATTTAGATCGGACACTGTCCGA AAATAAAGATTGAGATAATTTTCAAGAATAGTGTCAATGATGTATTatta aaaagttcattttaaACTTGTAAGAATGACAAAAGCTTCCAGCTTGTCAA GAAGACGGGTCCGAGAATAGCTTGGAATAACTTAAAAGAATAACTTCTTA AAGCAATatatgatatgagccctccccacTGGGGAATGGGTCATACTCTT TAcgaagtaggaattcctcctttttcaaTTTGGAACACTCAGCGCTGTCC AGACACCGCTGGTCCTGTGCACGTGAGACACAGATACCATGATGCATAGT GGTGACACTCGAACTGCGCGGGAGAGCATATAGCTCGTCGCAGGCGCAGG ACGGGATGAGTGACACCATATACCACAATGTCTGGCATATCACCAACATA CGAGAAGCAGTAATTCTTATCATCGTAGGCAGAAGtagtaaaaaaacaat aaaataatattCTTTATAGTACAGGCGCCAAGCATGAGTataaaaaattc tttatttagTAGCTAATTCGAATGTAATATCATCCATTAAGCTTGAATTA CCAGAATCTAATGATGGAATGTCTAAATCATCGACTTCAACTGTACTTGT GGTTGTCGTAGTGATCGTTTCAGTAATCACAATATCTCCATTCACATTTT CAGTTTTAGTTTCAATGACTACATTCTCAGAATTGTCTACTACTGGTGCA CTCTTTTCAGCTGCTGGTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000787XLOC_000787Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001528-exon-sc0000010-1491911889:413474..414393TCONS_00001528-exon-sc0000010-1491911889:413474..414393Clytia hemisphaericaexon
TCONS_00001528-exon-sc0000010-1510915933:413474..414393TCONS_00001528-exon-sc0000010-1510915933:413474..414393Clytia hemisphaericaexon
TCONS_00001528-exon-sc0000010-1575043694:413474..414393TCONS_00001528-exon-sc0000010-1575043694:413474..414393Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000010supercontigsc0000010:413474..414393 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.941839 0.827199 1.29773 0.812746 23.2713 14.3464 48.8834 55.0105 21.9463 33.3317 20.0688 14.25 43.6968 31.2001 8.20301 10.0286 15.2689 16.0225 36.6677 39.2121 15.659 17.2996 6.49066 6.41463 7.4586 8.27169 5.99567 4.79728 2.6272 3.61132
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00001528 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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