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TCONS_00001524 (transcript) - C. hemisphaerica

Overview
NameTCONS_00001524
Unique NameTCONS_00001524
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length671

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00001524 ID=TCONS_00001524|Name=TCONS_00001524|organism=Clytia hemisphaerica|type=transcript|length=671bp
ATAATgcttatgtttttaatttttagccaatcaaacctttactcgacgtt
ttttcgtgattttttacataaatctgctaataggaaattcgTGTATTCTT
GAGAAATTCCGCCAGCTTTCGGCCAGAAGTTGGCCCGGTGGTATAAGGCG
TTGGGTTCACGCACTAGGGTTCAGGAGACAAGCGCACTAAAAGTAAACCA
CAGCTTCATAAAGTTTTGTCCAGTCccttttttaaaatattaccTGTCTT
CTTTCTCATAGCTTCCAACTGTTTTCTTAACTCCGGTGCTTCTAATTCGA
AATACACCGATTCCCTCTTAGACAAAAGTTGATCGTACTGACCATCACTG
GTTGGCTGGTTATTGGTACACGAGGGTGGAGCGcccttttttgatgtttt
acatGAAATGGCTGGAGAGGGCGGTGCTGACTCGTCCGTTAAATCCAGAT
AATCATAAAGGCAttcagaagccattttattgtATTATTTAAACTATTTC
TTCGAGATTCTAGATTTTTTACTTGGAGAGTACTAAAGGTTGTCACGTAA
AAAAACGTTTCGTTCACTTTGTGAGATACAGcattatcaattatttttcg
AAAGTAAAGCCTTCGTTGCTGTAGCAAGAAGTGTCGGCAATATCACTTGA
TGAACTGTTCAAGATAAGCTC
Run BLAST on NCBI

transcript from alignment at sc0000010:133525..134195

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00001524 ID=TCONS_00001524|Name=TCONS_00001524|organism=Clytia hemisphaerica|type=transcript|length=671bp|location=Sequence derived from alignment at sc0000010:133525..134195 (Clytia hemisphaerica)
GAGCTTATCTTGAACAGTTCATCAAGTGATATTGCCGACACTTCTTGCTA CAGCAACGAAGGCTTTACTTTcgaaaaataattgataatgCTGTATCTCA CAAAGTGAACGAAACGTTTTTTTACGTGACAACCTTTAGTACTCTCCAAG TAAAAAATCTAGAATCTCGAAGAAATAGTTTAAATAATacaataaaatgg cttctgaaTGCCTTTATGATTATCTGGATTTAACGGACGAGTCAGCACCG CCCTCTCCAGCCATTTCatgtaaaacatcaaaaaagggCGCTCCACCCTC GTGTACCAATAACCAGCCAACCAGTGATGGTCAGTACGATCAACTTTTGT CTAAGAGGGAATCGGTGTATTTCGAATTAGAAGCACCGGAGTTAAGAAAA CAGTTGGAAGCTATGAGAAAGAAGACAggtaatattttaaaaaaggGACT GGACAAAACTTTATGAAGCTGTGGTTTACTTTTAGTGCGCTTGTCTCCTG AACCCTAGTGCGTGAACCCAACGCCTTATACCACCGGGCCAACTTCTGGC CGAAAGCTGGCGGAATTTCTCAAGAATACAcgaatttcctattagcagat ttatgtaaaaaatcacgaaaaaacgtcgagtaaaggtttgattggctaaa aattaaaaacataagcATTAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000783XLOC_000783Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001524-exon-sc0000010-1491911889:133525..134195TCONS_00001524-exon-sc0000010-1491911889:133525..134195Clytia hemisphaericaexon
TCONS_00001524-exon-sc0000010-1510915933:133525..134195TCONS_00001524-exon-sc0000010-1510915933:133525..134195Clytia hemisphaericaexon
TCONS_00001524-exon-sc0000010-1575043694:133525..134195TCONS_00001524-exon-sc0000010-1575043694:133525..134195Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000010supercontigsc0000010:133525..134195 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.22867 0.37442 1.21726 1.61623 0.103558 0.0818328 0.0987278 0 0 0.0801548 0 0 1.22572 1.21989 0.741282 1.31025 3.74707 2.59981 1.63262 2.05011 1.63342 2.49882 0.704382 1.84111 3.13302 2.86972 0 0.224751 1.19326 0.521032
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00001524 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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