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TCONS_00001519 (transcript) - C. hemisphaerica

Overview
NameTCONS_00001519
Unique NameTCONS_00001519
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length379

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00001519 ID=TCONS_00001519|Name=TCONS_00001519|organism=Clytia hemisphaerica|type=transcript|length=379bp
gaCAAGTCACAATAAAACTCACATTTGTTTAATGAAAAAGAATGAATATA
AATTAAACAGAAACATTTCTAAACTTTAACATTAACAGTTTGAAATAAAT
AAAGATAATGATTGTAAAAAACGAGAACctataaaatatacaaaatatta
tgtattaaacattaaaattgAATTCATCATTTGGCCGCAAGtggtttttg
aaaactttttcttgaaaacaaacttAGTAACGTTGACAATTTTATCTTCA
ACACTATCTTCAAAAGAATATTCTTTAAATGCTTCATATATTGCATGAAA
TTCAGGTTGTACTTTCggtttctgaaagcttaatcgACAGCCATGTAAAA
TTCCAATACCATTCTTGATAGCCCGATNN
Run BLAST on NCBI

transcript from alignment at sc0000010:18883..19261

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00001519 ID=TCONS_00001519|Name=TCONS_00001519|organism=Clytia hemisphaerica|type=transcript|length=379bp|location=Sequence derived from alignment at sc0000010:18883..19261 (Clytia hemisphaerica)
NNATCGGGCTATCAAGAATGGTATTGGAATTTTACATGGCTGTcgattaa gctttcagaaaccGAAAGTACAACCTGAATTTCATGCAATATATGAAGCA TTTAAAGAATATTCTTTTGAAGATAGTGTTGAAGATAAAATTGTCAACGT TACTaagtttgttttcaagaaaaagttttcaaaaaccaCTTGCGGCCAAA TGATGAATTcaattttaatgtttaatacataatattttgtatattttata gGTTCTCGTTTTTTACAATCATTATCTTTATTTATTTCAAACTGTTAATG TTAAAGTTTAGAAATGTTTCTGTTTAATTTATATTCATTCTTTTTCATTA AACAAATGTGAGTTTTATTGTGACTTGtc
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000778XLOC_000778Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001519-exon-sc0000010-1491911889:18883..19261TCONS_00001519-exon-sc0000010-1491911889:18883..19261Clytia hemisphaericaexon
TCONS_00001519-exon-sc0000010-1510915933:18883..19261TCONS_00001519-exon-sc0000010-1510915933:18883..19261Clytia hemisphaericaexon
TCONS_00001519-exon-sc0000010-1575043694:18883..19261TCONS_00001519-exon-sc0000010-1575043694:18883..19261Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000010supercontigsc0000010:18883..19261 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
11.2004 11.4731 5.03768 5.13585 1.40717 0.915567 3.48799 1.05848 0.86504 2.10655 2.04129 0.54092 0.480435 0 0.144095 0.884212 0.92057 1.11375 0 0 3.18209 4.75914 6.23024 7.64759 1.56845 0.799887 4.01574 4.06495 8.81168 5.0993
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00001519 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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