TCONS_00001514 (transcript) - C. hemisphaerica

Overview
NameTCONS_00001514
Unique NameTCONS_00001514
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length800

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00001514 ID=TCONS_00001514|Name=TCONS_00001514|organism=Clytia hemisphaerica|type=transcript|length=800bp
CTGTAAACTCAATAATAAATTATTGACGACTAATCGTTCACAAAAGGACT
TTTTCATTCGAGaataagtttaatattttcaaaaagttataatcATCATG
AAAATATGTCGTTTTGAGAGAGAAGATGAATGTTGAACGTTAAAGAGCAT
CAGCTAAACTGACCACAattgaagttgaaaaaaatactgcaggaaaaacT
CTTCTTGAAATAACAATGAATAGAAttcttttcttcttgttttttcttgc
aACTAATTTGTGCTACAAAGAAGTTTCTTCATTGAAATGCTATACGTGTT
CAACTCTGGACGCCGAAGTTTGTCGTCTTGAGCAAGCACTTGATGAAAGT
CAACTCGAATGTGGTGCAAGAACCACGTGTGTAACTATGACGTATGAGCA
ATTTTCAAGCGGACAAAAAATCAAACGGTTTATCAAAAAGTGTGGAATGG
CTGATTCAAGACGATGTAAGGATAATTGTGAGAATGTTGAACACCTTGTC
AAAGACTCGTGTAAGACATCATGCTGCTCAAGTAATCTTTGTAATGAAGA
AGTAAAGGAGGATATTATTTGGTATGCACTAATTGGAACACCAAACTCAA
GTCACCGGATATTTCAAGGAAATTTCTTCACAATATTTGCTGTCATAGTT
TCAGGAATTTTGTATNTATTTCAAGGAAATTTCTTCACAATATTTGCTGT
CATAGTTTTAGGAATTTTGTATTTGGTATAAATATGAGTTTTTTGACTCT
TGTAATATAAGTTTGACTTgactttttaagaattttagtTGAATAGAAGG
Run BLAST on NCBI

protein sequence of TCONS_00001514-protein

>TCONS_00001514-protein ID=TCONS_00001514-protein|Name=TCONS_00001514-protein|organism=Clytia hemisphaerica|type=polypeptide|length=171bp
MNRILFFLFFLATNLCYKEVSSLKCYTCSTLDAEVCRLEQALDESQLECG
ARTTCVTMTYEQFSSGQKIKRFIKKCGMADSRRCKDNCENVEHLVKDSCK
TSCCSSNLCNEEVKEDIIWYALIGTPNSSHRIFQGNFFTIFAVIVSGILY
XFQGNFFTIFAVIVLGILYLV
Run BLAST on NCBI

transcript from alignment at sc0000010:1139680..1142192-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00001514 ID=TCONS_00001514|Name=TCONS_00001514|organism=Clytia hemisphaerica|type=transcript|length=2513bp|location=Sequence derived from alignment at sc0000010:1139680..1142192- (Clytia hemisphaerica)
CTGTAAACTCAATAATAAATTATTGACGACTAATCGTTCACAAAAGGACT
TTTTCATTCGAGAATAAGTTTAATATTTTCAAAAAGTTATAATCATCATG
AAAATATGTCGTTTTGAGAGAGAAGATGAATGTTGAACGTTAAAGAGCAT
CAGCTAAACTGACCACAATTGAAGTTGAAAAAAATACTGCAGGAAAAACT
CTTCTTGAAATAACAATGAATAGAATTCTTTTCTTCTTGTTTTTTCTTGC
AACTAATTTGTGCTACAAAGGTATGAAATGAAAACTTTCTCTCATATGTA
TATTCTTATAACTTTTTTACTTCATTTATACACTCCCGTTTCACAGACCC
ACTGGCACTAGGACCCCCGCCCCACTGGAAAATTTGGCCAAAATTTCGTT
ACCGGTGGATAAGATAACTTACAATTTCAAACCACTGTTATTAGCCTATT
TTATAGGATTCGTGTTTTAATACATGGTATTATTCTCAAATTTTTATTCT
CAGAAGTTCCAGCGGGACTGTGAGACTGTAGACTTTATTTTAACTGGGGC
GCTAACAATAACAAATCAATATTAGGGTTTGATCTCAATTAAGCTACGAT
ACAATAACAATATTTTCATGCTTAGACATACAGTAAGTGGCCCCTAAAAC
ATCTATCCAAATTTAAATCTTTCTAGTGAATTCAGAAAATAGGGAGCGTT
AAAAGCTTTTCTTGTGCTTCAAAATGTTTAGTTTCTTTCCCAAAAGATAA
TTTTCTGAGAATAAAGGTTTTTGTATGATTTTTTTTTTAGTCAAAGTTGA
GTCATATTTTTCTAATAGCCCCCAAAACGGAGGTTTAGTTTTTTCAAAAT
ATCTTTATCATAAAGCATAGCACCAACATCAATATCAATTAGGTATCAAG
GCAATGCTTTACGACTTGAAAAGGTCAAAATTTACTTTTCTCTTTATCTT
CATACAAATGGTTGTCAAAACGGAGGTTAGTGGCCCCAAAAACGTCGATT
CAGTTAAATTGAAATTGTTAAAAGCCCATCACTTAAACATGTCTCGAATT
AATAACATGAAAAAATAATTAGTTTTTGATGATTTTGCACAAAAAAAAGT
GTTTCAGGCCTGGCTGAGTGCAAAATCCCGTGCAAAATACTAGCAGTCTC
TAATGTTAATTTTATCGTGAAATATTTCGAATTTCCTGGAAAACTTTGAA
TTACTGAGCTGGTTTGTTAGTATATGTTTATACTTTCCAGATTTACCCAG
TTTTTAGGGGTTAATTTTCAATCTTGTTTGACTTTTGACGGTTTTAGTTT
AGTTCAAAAAAATGGATTTTCGAAATTAATTTTTGAAAAAAAGGGAGAAG
AAAATTAGCCATGTTAAAAATGATATTTTGGTATCTTTCTTTTTTCGGAC
TCGGAGAAATGTGTTAGGATTGAATCTTAAGCTTTTCCAGGTTTTAAAGT
ACAAACATAGCTCATTAAGACAAATGCTCCGTTTTGGGGGCCATATACTG
TACGGTGTCAGAATTCAGGTGCACAAATAATACTGATTTCAAATGTTTAG
AAGTTTCTTCATTGAAATGCTATACGTGTTCAACTCTGGACGCCGAAGTT
TGTCGTCTTGAGCAAGCACTTGATGAAAGTCAACTCGAATGTGGTGCAAG
AACCACGTGTGTAACTATGACGTATGAGCAATTTTCAAGCGGACAAAAAA
TCAAACGGTTTATCAAAAAGTGTGGAATGGCTGATTCAAGACGATGTAAG
GATAATTGTGAGAATGTTGAACACCTTGTCAAAGACTCGTGTAAGGTGAG
CTGAAAGTTTGCTCGTTTTTTACAAGAATACCCAAATTTTTTCTTTGGAT
ATTTTTAACCTTTTGAGTTTTAAACTATTTTCTTGTAAGTAATTTTGTCC
ATTTTCCTCAGAAATCGGGTTCTATTTTAGGACCAGCAATACTTTCATTT
CCCTAGCGAGGGGAATATAAATTAACTAATATATTGTTTAAAAAAATGAT
ATCCTTACACTAAAGCGATTTGTTACGGTATGCTAGCCCTATTCGTACTA
GGGGGGGGGGCTCAGACAGGGAACTCTATTTTAAGGGAATTTTAAGGACA
TTTTAGATTTTATTTACTTTCAGCATGTTCATCAGTTATGAGGCTTGGTC
CAAATTGACACCTAAGAATTTTATGCTAGATATTTGTCAGTCCATTACAA
ATTATACTTTTAAGTGTTTTTCTTGTAGACATCATGCTGCTCAAGTAATC
TTTGTAATGAAGAAGTAAAGGAGGATATTATTTGGTATGCACTAATTGGA
ACACCAAACTCAAGTCACCGGATATTTCAAGGAAATTTCTTCACAATATT
TGCTGTCATAGTTTCAGGAATTTTGTATNTATTTCAAGGAAATTTCTTCA
CAATATTTGCTGTCATAGTTTTAGGAATTTTGTATTTGGTATAAATATGA
GTTTTTTGACTCTTGTAATATAAGTTTGACTTGACTTTTTAAGAATTTTA
GTTGAATAGAAGG

Coding sequence (CDS) from alignment at sc0000010:1139680..1142192-

>TCONS_00001514 ID=TCONS_00001514|Name=TCONS_00001514|organism=Clytia hemisphaerica|type=CDS|length=1548bp|location=Sequence derived from alignment at sc0000010:1139680..1142192- (Clytia hemisphaerica)
ACATCATGCTGCTCAAGTAATCTTTGTAATGAAGAAGTAAAGGAGGATAT
TATTTGGTATGCACTAATTGGAACACCAAACTCAAGTCACCGGATATTTC
AAGGAAATTTCTTCACAATATTTGCTGTCATAGTTTCAGGAATTTTGTAT
NTATTTCAAGGAAATTTCTTCACAATATTTGCTGTCATAGTTTTAGGAAT
TTTGTATTTGGTATAAAAGTTTCTTCATTGAAATGCTATACGTGTTCAAC
TCTGGACGCCGAAGTTTGTCGTCTTGAGCAAGCACTTGATGAAAGTCAAC
TCGAATGTGGTGCAAGAACCACGTGTGTAACTATGACGTATGAGCAATTT
TCAAGCGGACAAAAAATCAAACGGTTTATCAAAAAGTGTGGAATGGCTGA
TTCAAGACGATGTAAGGATAATTGTGAGAATGTTGAACACCTTGTCAAAG
ACTCGTGTAAGATGAATAGAATTCTTTTCTTCTTGTTTTTTCTTGCAACT
AATTTGTGCTACAAAGACATCATGCTGCTCAAGTAATCTTTGTAATGAAG
AAGTAAAGGAGGATATTATTTGGTATGCACTAATTGGAACACCAAACTCA
AGTCACCGGATATTTCAAGGAAATTTCTTCACAATATTTGCTGTCATAGT
TTCAGGAATTTTGTATNTATTTCAAGGAAATTTCTTCACAATATTTGCTG
TCATAGTTTTAGGAATTTTGTATTTGGTATAAAAGTTTCTTCATTGAAAT
GCTATACGTGTTCAACTCTGGACGCCGAAGTTTGTCGTCTTGAGCAAGCA
CTTGATGAAAGTCAACTCGAATGTGGTGCAAGAACCACGTGTGTAACTAT
GACGTATGAGCAATTTTCAAGCGGACAAAAAATCAAACGGTTTATCAAAA
AGTGTGGAATGGCTGATTCAAGACGATGTAAGGATAATTGTGAGAATGTT
GAACACCTTGTCAAAGACTCGTGTAAGATGAATAGAATTCTTTTCTTCTT
GTTTTTTCTTGCAACTAATTTGTGCTACAAAGACATCATGCTGCTCAAGT
AATCTTTGTAATGAAGAAGTAAAGGAGGATATTATTTGGTATGCACTAAT
TGGAACACCAAACTCAAGTCACCGGATATTTCAAGGAAATTTCTTCACAA
TATTTGCTGTCATAGTTTCAGGAATTTTGTATNTATTTCAAGGAAATTTC
TTCACAATATTTGCTGTCATAGTTTTAGGAATTTTGTATTTGGTATAAAA
GTTTCTTCATTGAAATGCTATACGTGTTCAACTCTGGACGCCGAAGTTTG
TCGTCTTGAGCAAGCACTTGATGAAAGTCAACTCGAATGTGGTGCAAGAA
CCACGTGTGTAACTATGACGTATGAGCAATTTTCAAGCGGACAAAAAATC
AAACGGTTTATCAAAAAGTGTGGAATGGCTGATTCAAGACGATGTAAGGA
TAATTGTGAGAATGTTGAACACCTTGTCAAAGACTCGTGTAAGATGAATA
GAATTCTTTTCTTCTTGTTTTTTCTTGCAACTAATTTGTGCTACAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000773XLOC_000773Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001514-proteinTCONS_00001514-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001514-exon-sc0000010-1575043694:1141923..1142192TCONS_00001514-exon-sc0000010-1575043694:1141923..1142192Clytia hemisphaericaexon
TCONS_00001514-exon-sc0000010-1575043694:1140398..1140642TCONS_00001514-exon-sc0000010-1575043694:1140398..1140642Clytia hemisphaericaexon
TCONS_00001514-exon-sc0000010-1575043694:1139680..1139964TCONS_00001514-exon-sc0000010-1575043694:1139680..1139964Clytia hemisphaericaexon
TCONS_00001514-exon-sc0000010-1510915933:1141923..1142192TCONS_00001514-exon-sc0000010-1510915933:1141923..1142192Clytia hemisphaericaexon
TCONS_00001514-exon-sc0000010-1510915933:1140398..1140642TCONS_00001514-exon-sc0000010-1510915933:1140398..1140642Clytia hemisphaericaexon
TCONS_00001514-exon-sc0000010-1510915933:1139680..1139964TCONS_00001514-exon-sc0000010-1510915933:1139680..1139964Clytia hemisphaericaexon
TCONS_00001514-exon-sc0000010-1491911889:1141923..1142192TCONS_00001514-exon-sc0000010-1491911889:1141923..1142192Clytia hemisphaericaexon
TCONS_00001514-exon-sc0000010-1491911889:1140398..1140642TCONS_00001514-exon-sc0000010-1491911889:1140398..1140642Clytia hemisphaericaexon
TCONS_00001514-exon-sc0000010-1491911889:1139680..1139964TCONS_00001514-exon-sc0000010-1491911889:1139680..1139964Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000010supercontigsc0000010:1139680..1142192 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.07152	0	0	0.144278	0	0	0.0771781	0.144506	0.761622	0.352272	0.529774	0.66881	1.53975	2.40477	0.157079	0.109742	3.31667	4.19684	3.48578	3.98464	10.1022	8.41359	3.58623	3.33558	2.96477	4.25659	1.18828	1.20034	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00001514 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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