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TCONS_00001513 (transcript) - C. hemisphaerica

Overview
NameTCONS_00001513
Unique NameTCONS_00001513
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length532

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00001513 ID=TCONS_00001513|Name=TCONS_00001513|organism=Clytia hemisphaerica|type=transcript|length=532bp
TTTTTAACGAAAAGAACATCCACAtagtcaaagaaaaagaaagtttcagt
CACTTAAGTTATCATCACGTTTGCAAAATCAAATAGGAATGACTGGGAAG
TTTGTTGcagcaatttttattttcggAGTCCTTAAGAAAGCGGATGCTGT
AAAATGTTACACTTGTTCAACATTGGGTGATCCACAAGTTTGTAAACTAT
GGCAAGAAATGGAAGATAATCAGAGGGAATGTGTCTCTGGATCAAGATGC
TTGACAATTTCATACAAAGAAAGCCATAATGGAGGCCAACGGCCTCGATT
TGTGAAGAAGTGTTCAAATCCAACACTGGATGTTTGTGATTCACattgta
aaaatgtcaaaaacgtTATTCCTAATACCTGCCGGACATCATGCTGCTCA
ACAAACCTGTGCAACGAAGAGGTGAACGAGAAATATATCTGGTATGCTTT
CAACACAGGAAAGTCAAGGTCCAACAGCGCCAATACAAAGCACATGAAAA
ATGACTTGGTCACCTTCTGTTTGACAAGTGTG
Run BLAST on NCBI

protein sequence of TCONS_00001513-protein

>TCONS_00001513-protein ID=TCONS_00001513-protein|Name=TCONS_00001513-protein|organism=Clytia hemisphaerica|type=polypeptide|length=148bp
MTGKFVAAIFIFGVLKKADAVKCYTCSTLGDPQVCKLWQEMEDNQRECVS
GSRCLTISYKESHNGGQRPRFVKKCSNPTLDVCDSHCKNVKNVIPNTCRT
SCCSTNLCNEEVNEKYIWYAFNTGKSRSNSANTKHMKNDLVTFCLTSV
Run BLAST on NCBI

transcript from alignment at sc0000010:1132383..1134413-

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00001513 ID=TCONS_00001513|Name=TCONS_00001513|organism=Clytia hemisphaerica|type=transcript|length=2031bp|location=Sequence derived from alignment at sc0000010:1132383..1134413- (Clytia hemisphaerica)
TTTTTAACGAAAAGAACATCCACATAGTCAAAGAAAAAGAAAGTTTCAGT CACTTAAGTTATCATCACGTTTGCAAAATCAAATAGGAATGACTGGGAAG TTTGTTGCAGCAATTTTTATTTTCGGAGTCCTTAAGAAAGGTGAGTAATA AAAATTCACGCAATGACGCATCTTTTTTTTCAAAATTCACGCAATTTCTT TTCAAAATTCTCGCACCTTCTGTTCTTTAAAAGCATTTCAAATCACGCAT TCGTGGAGCTTTTTCAAAATTTCTACGCATTCACGTAAAAAAAAGCCCAT TCACGCAACCACACAAACTGCTGTGGAGGGGCCTTAGAAATATAGGTGAT TTACTGATTAATAAAATTACAATCAGGGTCGAAATATATTGGGAATTTTG GTTAATTCCTCGTTTTCAGCAATTTAAAGTTCGGGCAAAGCTTTTGGGCA AATTGATAAATTTATTGGAATATTTCAATTCGGGAAGGCTATATTCTGAG CCCTATTGGACCATTCTTGGACTTTTAGTTCCTCAGACCCTAAGGTCTTA AGTCTAGCGTTAAAACTCAGAGTTAAAACTCTAGACCCGTTCAACCTGAT TTAAAGCACTTCCAAATCGTTTGTGGTTGTAAGATTTCGTGGGAATTTCC CTTTTTTCTTTGTAACTAAGTAAACACTAAGTGGCTTAGTAGATAAAGAT AAGTGAAGTTTAGGAAAATATACTTGGATTATCATTCATGATTCAAGAAT GTTGTTAAAGGTTTCCATACAAATCATTCTTGCAACGTCATGTTTAGAAA TTCTACTGACTCCAGTATCAAAACCATGATGAGAAATATTTAGTACACGA GTTTACTAATTATGCCTTTGTGCTATTGTTGCTATGCTGGAGTTTTTAAT TAATCAACATGGCATCGCGTCCTGCAAAATTTTTTCGTGTCAGCAGCTTT CGAGTTTTAGCGTTTATATACTTTGAATCGACAACCAGCATCTTTAAAGT CAAAACGTTATAAGTAGAAGCAGTGTCGCTTACTCAATCTATCTATCGGT AATAATATAATACCTTCTTACGTTTAAGCGGATGCTGTAAAATGTTACAC TTGTTCAACATTGGGTGATCCACAAGTTTGTAAACTATGGCAAGAAATGG AAGATAATCAGAGGGAATGTGTCTCTGGATCAAGATGCTTGACAATTTCA TACAAAGAAAGCCATAATGGAGGCCAACGGCCTCGATTTGTGAAGAAGTG TTCAAATCCAACACTGGATGTTTGTGATTCACATTGTAAAAATGTCAAAA ACGTTATTCCTAATACCTGCCGGGTAAGAACTTTACTGGCCCAAAATCGG GCCTTTATTAACATGTCCTCTGGGAATCAATCACCATAGCAATATTTTAG AGATGATGTAAGCGTTGTTCGTGACGTAGTTTATGAAAAGGCCTATCGCA TCAAAAGTAGTGATATGAGTAGAAAATTACCTTTTATTTAGCCTGGAGAT CCATACGATTTCTTCTGTTATTTACTGATGGCGAAATGAATAGCATGGTG GTTTTTGGGCTATGAGTTTGAATTTACCAACTTTAAATGACAGTTGAAAA CAAAATTAAATTTTGCTTTTATTTTAATTTTTACATGTCACACTTTTTTA GAAATAAACGGAAAGTTTCTGAACTTGTTTTAATTTTAGTAAGTGAGGAC AGCACTAGATTCGAATTTCCTACAGCAAATTTTTTGAGACAAAAATCTGC CTCAAAGGACAAACCTGCCCTGTATACATCAGATTATAAAAATGATTTGA CTCGNAACAAATCCGTCCTGTATACATCAGATTATAAAAATACCTTTGAT GTGACTCAAATGTTTGTCTTATTTTCTTTCTTAGACATCATGCTGCTCAA CAAACCTGTGCAACGAAGAGGTGAACGAGAAATATATCTGGTATGCTTTC AACACAGGAAAGTCAAGGTCCAACAGCGCCAATACAAAGCACATGAAAAA TGACTTGGTCACCTTCTGTTTGACAAGTGTG

Coding sequence (CDS) from alignment at sc0000010:1132383..1134413-

>TCONS_00001513 ID=TCONS_00001513|Name=TCONS_00001513|organism=Clytia hemisphaerica|type=CDS|length=1332bp|location=Sequence derived from alignment at sc0000010:1132383..1134413- (Clytia hemisphaerica)
ACATCATGCTGCTCAACAAACCTGTGCAACGAAGAGGTGAACGAGAAATA
TATCTGGTATGCTTTCAACACAGGAAAGTCAAGGTCCAACAGCGCCAATA
CAAAGCACATGAAAAATGACTTGGTCACCTTCTGTTTGACAAGTGTGCGG
ATGCTGTAAAATGTTACACTTGTTCAACATTGGGTGATCCACAAGTTTGT
AAACTATGGCAAGAAATGGAAGATAATCAGAGGGAATGTGTCTCTGGATC
AAGATGCTTGACAATTTCATACAAAGAAAGCCATAATGGAGGCCAACGGC
CTCGATTTGTGAAGAAGTGTTCAAATCCAACACTGGATGTTTGTGATTCA
CATTGTAAAAATGTCAAAAACGTTATTCCTAATACCTGCCGGATGACTGG
GAAGTTTGTTGCAGCAATTTTTATTTTCGGAGTCCTTAAGAAAGACATCA
TGCTGCTCAACAAACCTGTGCAACGAAGAGGTGAACGAGAAATATATCTG
GTATGCTTTCAACACAGGAAAGTCAAGGTCCAACAGCGCCAATACAAAGC
ACATGAAAAATGACTTGGTCACCTTCTGTTTGACAAGTGTGCGGATGCTG
TAAAATGTTACACTTGTTCAACATTGGGTGATCCACAAGTTTGTAAACTA
TGGCAAGAAATGGAAGATAATCAGAGGGAATGTGTCTCTGGATCAAGATG
CTTGACAATTTCATACAAAGAAAGCCATAATGGAGGCCAACGGCCTCGAT
TTGTGAAGAAGTGTTCAAATCCAACACTGGATGTTTGTGATTCACATTGT
AAAAATGTCAAAAACGTTATTCCTAATACCTGCCGGATGACTGGGAAGTT
TGTTGCAGCAATTTTTATTTTCGGAGTCCTTAAGAAAGACATCATGCTGC
TCAACAAACCTGTGCAACGAAGAGGTGAACGAGAAATATATCTGGTATGC
TTTCAACACAGGAAAGTCAAGGTCCAACAGCGCCAATACAAAGCACATGA
AAAATGACTTGGTCACCTTCTGTTTGACAAGTGTGCGGATGCTGTAAAAT
GTTACACTTGTTCAACATTGGGTGATCCACAAGTTTGTAAACTATGGCAA
GAAATGGAAGATAATCAGAGGGAATGTGTCTCTGGATCAAGATGCTTGAC
AATTTCATACAAAGAAAGCCATAATGGAGGCCAACGGCCTCGATTTGTGA
AGAAGTGTTCAAATCCAACACTGGATGTTTGTGATTCACATTGTAAAAAT
GTCAAAAACGTTATTCCTAATACCTGCCGGATGACTGGGAAGTTTGTTGC
AGCAATTTTTATTTTCGGAGTCCTTAAGAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000772XLOC_000772Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001513-proteinTCONS_00001513-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001513-exon-sc0000010-1575043694:1134274..1134413TCONS_00001513-exon-sc0000010-1575043694:1134274..1134413Clytia hemisphaericaexon
TCONS_00001513-exon-sc0000010-1575043694:1133091..1133335TCONS_00001513-exon-sc0000010-1575043694:1133091..1133335Clytia hemisphaericaexon
TCONS_00001513-exon-sc0000010-1575043694:1132383..1132529TCONS_00001513-exon-sc0000010-1575043694:1132383..1132529Clytia hemisphaericaexon
TCONS_00001513-exon-sc0000010-1510915933:1134274..1134413TCONS_00001513-exon-sc0000010-1510915933:1134274..1134413Clytia hemisphaericaexon
TCONS_00001513-exon-sc0000010-1510915933:1133091..1133335TCONS_00001513-exon-sc0000010-1510915933:1133091..1133335Clytia hemisphaericaexon
TCONS_00001513-exon-sc0000010-1510915933:1132383..1132529TCONS_00001513-exon-sc0000010-1510915933:1132383..1132529Clytia hemisphaericaexon
TCONS_00001513-exon-sc0000010-1491911889:1134274..1134413TCONS_00001513-exon-sc0000010-1491911889:1134274..1134413Clytia hemisphaericaexon
TCONS_00001513-exon-sc0000010-1491911889:1133091..1133335TCONS_00001513-exon-sc0000010-1491911889:1133091..1133335Clytia hemisphaericaexon
TCONS_00001513-exon-sc0000010-1491911889:1132383..1132529TCONS_00001513-exon-sc0000010-1491911889:1132383..1132529Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000010supercontigsc0000010:1132383..1134413 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.109915 0 0 0.730027 0 0 0 0 0.833823 0.458595 0.445123 0.219526 1.68188 1.28967 0 0.0669323 3.62908 2.95984 1.63465 4.5264 6.92267 6.40595 1.13426 2.63694 3.07333 2.54495 0.602864 0.64342 0 0.124209
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00001513 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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