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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00001513 ID=TCONS_00001513|Name=TCONS_00001513|organism=Clytia hemisphaerica|type=transcript|length=532bp TTTTTAACGAAAAGAACATCCACAtagtcaaagaaaaagaaagtttcagt CACTTAAGTTATCATCACGTTTGCAAAATCAAATAGGAATGACTGGGAAG TTTGTTGcagcaatttttattttcggAGTCCTTAAGAAAGCGGATGCTGT AAAATGTTACACTTGTTCAACATTGGGTGATCCACAAGTTTGTAAACTAT GGCAAGAAATGGAAGATAATCAGAGGGAATGTGTCTCTGGATCAAGATGC TTGACAATTTCATACAAAGAAAGCCATAATGGAGGCCAACGGCCTCGATT TGTGAAGAAGTGTTCAAATCCAACACTGGATGTTTGTGATTCACattgta aaaatgtcaaaaacgtTATTCCTAATACCTGCCGGACATCATGCTGCTCA ACAAACCTGTGCAACGAAGAGGTGAACGAGAAATATATCTGGTATGCTTT CAACACAGGAAAGTCAAGGTCCAACAGCGCCAATACAAAGCACATGAAAA ATGACTTGGTCACCTTCTGTTTGACAAGTGTG Run BLAST on NCBI protein sequence of TCONS_00001513-protein >TCONS_00001513-protein ID=TCONS_00001513-protein|Name=TCONS_00001513-protein|organism=Clytia hemisphaerica|type=polypeptide|length=148bp
MTGKFVAAIFIFGVLKKADAVKCYTCSTLGDPQVCKLWQEMEDNQRECVS GSRCLTISYKESHNGGQRPRFVKKCSNPTLDVCDSHCKNVKNVIPNTCRT SCCSTNLCNEEVNEKYIWYAFNTGKSRSNSANTKHMKNDLVTFCLTSV Run BLAST on NCBI transcript from alignment at sc0000010:1132383..1134413- Legend: exonfive_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00001513 ID=TCONS_00001513|Name=TCONS_00001513|organism=Clytia hemisphaerica|type=transcript|length=2031bp|location=Sequence derived from alignment at sc0000010:1132383..1134413- (Clytia hemisphaerica) TTTTTAACGAAAAGAACATCCACATAGTCAAAGAAAAAGAAAGTTTCAGT
CACTTAAGTTATCATCACGTTTGCAAAATCAAATAGGAATGACTGGGAAG
TTTGTTGCAGCAATTTTTATTTTCGGAGTCCTTAAGAAAGGTGAGTAATA
AAAATTCACGCAATGACGCATCTTTTTTTTCAAAATTCACGCAATTTCTT
TTCAAAATTCTCGCACCTTCTGTTCTTTAAAAGCATTTCAAATCACGCAT
TCGTGGAGCTTTTTCAAAATTTCTACGCATTCACGTAAAAAAAAGCCCAT
TCACGCAACCACACAAACTGCTGTGGAGGGGCCTTAGAAATATAGGTGAT
TTACTGATTAATAAAATTACAATCAGGGTCGAAATATATTGGGAATTTTG
GTTAATTCCTCGTTTTCAGCAATTTAAAGTTCGGGCAAAGCTTTTGGGCA
AATTGATAAATTTATTGGAATATTTCAATTCGGGAAGGCTATATTCTGAG
CCCTATTGGACCATTCTTGGACTTTTAGTTCCTCAGACCCTAAGGTCTTA
AGTCTAGCGTTAAAACTCAGAGTTAAAACTCTAGACCCGTTCAACCTGAT
TTAAAGCACTTCCAAATCGTTTGTGGTTGTAAGATTTCGTGGGAATTTCC
CTTTTTTCTTTGTAACTAAGTAAACACTAAGTGGCTTAGTAGATAAAGAT
AAGTGAAGTTTAGGAAAATATACTTGGATTATCATTCATGATTCAAGAAT
GTTGTTAAAGGTTTCCATACAAATCATTCTTGCAACGTCATGTTTAGAAA
TTCTACTGACTCCAGTATCAAAACCATGATGAGAAATATTTAGTACACGA
GTTTACTAATTATGCCTTTGTGCTATTGTTGCTATGCTGGAGTTTTTAAT
TAATCAACATGGCATCGCGTCCTGCAAAATTTTTTCGTGTCAGCAGCTTT
CGAGTTTTAGCGTTTATATACTTTGAATCGACAACCAGCATCTTTAAAGT
CAAAACGTTATAAGTAGAAGCAGTGTCGCTTACTCAATCTATCTATCGGT
AATAATATAATACCTTCTTACGTTTAAGCGGATGCTGTAAAATGTTACAC
TTGTTCAACATTGGGTGATCCACAAGTTTGTAAACTATGGCAAGAAATGG
AAGATAATCAGAGGGAATGTGTCTCTGGATCAAGATGCTTGACAATTTCA
TACAAAGAAAGCCATAATGGAGGCCAACGGCCTCGATTTGTGAAGAAGTG
TTCAAATCCAACACTGGATGTTTGTGATTCACATTGTAAAAATGTCAAAA
ACGTTATTCCTAATACCTGCCGGGTAAGAACTTTACTGGCCCAAAATCGG
GCCTTTATTAACATGTCCTCTGGGAATCAATCACCATAGCAATATTTTAG
AGATGATGTAAGCGTTGTTCGTGACGTAGTTTATGAAAAGGCCTATCGCA
TCAAAAGTAGTGATATGAGTAGAAAATTACCTTTTATTTAGCCTGGAGAT
CCATACGATTTCTTCTGTTATTTACTGATGGCGAAATGAATAGCATGGTG
GTTTTTGGGCTATGAGTTTGAATTTACCAACTTTAAATGACAGTTGAAAA
CAAAATTAAATTTTGCTTTTATTTTAATTTTTACATGTCACACTTTTTTA
GAAATAAACGGAAAGTTTCTGAACTTGTTTTAATTTTAGTAAGTGAGGAC
AGCACTAGATTCGAATTTCCTACAGCAAATTTTTTGAGACAAAAATCTGC
CTCAAAGGACAAACCTGCCCTGTATACATCAGATTATAAAAATGATTTGA
CTCGNAACAAATCCGTCCTGTATACATCAGATTATAAAAATACCTTTGAT
GTGACTCAAATGTTTGTCTTATTTTCTTTCTTAGACATCATGCTGCTCAA
CAAACCTGTGCAACGAAGAGGTGAACGAGAAATATATCTGGTATGCTTTC
AACACAGGAAAGTCAAGGTCCAACAGCGCCAATACAAAGCACATGAAAAA
TGACTTGGTCACCTTCTGTTTGACAAGTGTG Coding sequence (CDS) from alignment at sc0000010:1132383..1134413- >TCONS_00001513 ID=TCONS_00001513|Name=TCONS_00001513|organism=Clytia hemisphaerica|type=CDS|length=1332bp|location=Sequence derived from alignment at sc0000010:1132383..1134413- (Clytia hemisphaerica) ACATCATGCTGCTCAACAAACCTGTGCAACGAAGAGGTGAACGAGAAATA TATCTGGTATGCTTTCAACACAGGAAAGTCAAGGTCCAACAGCGCCAATA CAAAGCACATGAAAAATGACTTGGTCACCTTCTGTTTGACAAGTGTGCGG ATGCTGTAAAATGTTACACTTGTTCAACATTGGGTGATCCACAAGTTTGT AAACTATGGCAAGAAATGGAAGATAATCAGAGGGAATGTGTCTCTGGATC AAGATGCTTGACAATTTCATACAAAGAAAGCCATAATGGAGGCCAACGGC CTCGATTTGTGAAGAAGTGTTCAAATCCAACACTGGATGTTTGTGATTCA CATTGTAAAAATGTCAAAAACGTTATTCCTAATACCTGCCGGATGACTGG GAAGTTTGTTGCAGCAATTTTTATTTTCGGAGTCCTTAAGAAAGACATCA TGCTGCTCAACAAACCTGTGCAACGAAGAGGTGAACGAGAAATATATCTG GTATGCTTTCAACACAGGAAAGTCAAGGTCCAACAGCGCCAATACAAAGC ACATGAAAAATGACTTGGTCACCTTCTGTTTGACAAGTGTGCGGATGCTG TAAAATGTTACACTTGTTCAACATTGGGTGATCCACAAGTTTGTAAACTA TGGCAAGAAATGGAAGATAATCAGAGGGAATGTGTCTCTGGATCAAGATG CTTGACAATTTCATACAAAGAAAGCCATAATGGAGGCCAACGGCCTCGAT TTGTGAAGAAGTGTTCAAATCCAACACTGGATGTTTGTGATTCACATTGT AAAAATGTCAAAAACGTTATTCCTAATACCTGCCGGATGACTGGGAAGTT TGTTGCAGCAATTTTTATTTTCGGAGTCCTTAAGAAAGACATCATGCTGC TCAACAAACCTGTGCAACGAAGAGGTGAACGAGAAATATATCTGGTATGC TTTCAACACAGGAAAGTCAAGGTCCAACAGCGCCAATACAAAGCACATGA AAAATGACTTGGTCACCTTCTGTTTGACAAGTGTGCGGATGCTGTAAAAT GTTACACTTGTTCAACATTGGGTGATCCACAAGTTTGTAAACTATGGCAA GAAATGGAAGATAATCAGAGGGAATGTGTCTCTGGATCAAGATGCTTGAC AATTTCATACAAAGAAAGCCATAATGGAGGCCAACGGCCTCGATTTGTGA AGAAGTGTTCAAATCCAACACTGGATGTTTGTGATTCACATTGTAAAAAT GTCAAAAACGTTATTCCTAATACCTGCCGGATGACTGGGAAGTTTGTTGC AGCAATTTTTATTTTCGGAGTCCTTAAGAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00001513-exon-sc0000010-1575043694:1134274..1134413 | TCONS_00001513-exon-sc0000010-1575043694:1134274..1134413 | Clytia hemisphaerica | exon |
TCONS_00001513-exon-sc0000010-1575043694:1133091..1133335 | TCONS_00001513-exon-sc0000010-1575043694:1133091..1133335 | Clytia hemisphaerica | exon |
TCONS_00001513-exon-sc0000010-1575043694:1132383..1132529 | TCONS_00001513-exon-sc0000010-1575043694:1132383..1132529 | Clytia hemisphaerica | exon |
TCONS_00001513-exon-sc0000010-1510915933:1134274..1134413 | TCONS_00001513-exon-sc0000010-1510915933:1134274..1134413 | Clytia hemisphaerica | exon |
TCONS_00001513-exon-sc0000010-1510915933:1133091..1133335 | TCONS_00001513-exon-sc0000010-1510915933:1133091..1133335 | Clytia hemisphaerica | exon |
TCONS_00001513-exon-sc0000010-1510915933:1132383..1132529 | TCONS_00001513-exon-sc0000010-1510915933:1132383..1132529 | Clytia hemisphaerica | exon |
TCONS_00001513-exon-sc0000010-1491911889:1134274..1134413 | TCONS_00001513-exon-sc0000010-1491911889:1134274..1134413 | Clytia hemisphaerica | exon |
TCONS_00001513-exon-sc0000010-1491911889:1133091..1133335 | TCONS_00001513-exon-sc0000010-1491911889:1133091..1133335 | Clytia hemisphaerica | exon |
TCONS_00001513-exon-sc0000010-1491911889:1132383..1132529 | TCONS_00001513-exon-sc0000010-1491911889:1132383..1132529 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
sc0000010 | supercontig | sc0000010:1132383..1134413 - |
Blast
The following BLAST results are available for this feature:
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