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TCONS_00001507 (transcript) - C. hemisphaerica

Overview
NameTCONS_00001507
Unique NameTCONS_00001507
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2645

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00001507 ID=TCONS_00001507|Name=TCONS_00001507|organism=Clytia hemisphaerica|type=transcript|length=2645bp
acgaggtcaaaaatccagggtggtaaaaaatgggaggaaaaaatccaggg
ggtcgcctttaaaaaaaagaagatctcCTCAACATTGGGGGTACAAatct
ttttttggaatagcccaataacagagcgtcaactgtagtaaTAAATTCAA
CCTTAATAGAAGAGATGAATACTATTTATATTAACAAGAATCTTTAACCA
ACAAATTCGGGTCCCGTCATTGGAATATCAGATTCAAAAGCATCTGTCTC
AATTTTAATTTCGTTACCAGGAATCAATCCTTGGTCATTGTCCTGGTAGT
GAGGAACTTTTAGTTCATTGGATATTGGTTCGACATAGGAAGCGTATTGG
TATATTCTGACAGGTGCCTGTTTGCTAGAATTCGTTTGATGTTTCTCTTG
TTTATTTGGTGTATGAGTCATGGTACCATGTGATTGTTTTTCGGTACTGA
ATTTAATCGAAGGTTTGCTGCCTGATTTTATTGGTTCACTTGGTAACTTT
TGTAGTTCGTTTTCTGTTTTACTTGGTTTCAAAAGTTCGCTCGATTTTGA
TaatatcttctttttcaaaagttgtTTTGGTGAACTCGTGAAGTCTACCA
TTTCGGTAGAAGACAATTTCCGTTTGATTGCAGTATTATTTAgatttaaa
acttttgtttttgacgATGGGTGGTCTTGAGACTTGCATCCTCCTACAAT
TTCAATGTTATTCGAAGTTTGCTTTGTTACGTACCTTGATTGAATCTTGG
ATATCTGGCAACACTTATTCAATTCACAATTGCTGCTGAGGTCCGTTAGA
CAGACTTCACAGTACCGAGTTATTATTCGGTTACCATCAATAAGTGTTTT
AGTTGATTTGAGTGCTTCTTTTCCGGTCTTTGAATTCTTTCTTCTTGGTT
TTCTGTCAATTCCAGTCTTTTGTTGCTGATATGTTTCTGATGATTTATTA
GGTGGTTGGCAGCTTTGCACTACAGAGCTTGGTTTTGACTCCATCATCAA
TTGATATGGTACATCACAGAGGAAGGGACTCGGATCGATCGACAAATTTA
AAGACTTACTATTTGATTCAGGCTGAACGAGGGTTAGCGATTGAGAATGt
tctttttgtttcatttcgTTCAAAGCTTTCTCGTGAATATTTGATTGTAA
TCTACATGATGTCGAATCTGCGCCAATTAGATTCTTATCTGATGTCGAAT
TTAAGATAGCTGGATTCTTATTGGTCAAACGCTTAGCTGGTGTCGAATCT
GCGCCAGTTTGATTCTTATTAAGTGTTGAATTTAAGTTATCTTAAATTAT
CTTAGATTCTTATTGGTTAAACGAGAAAGTATACTATCCATTTGTTTTGG
TAAGGGTTTCTGGTCTTTAATGATCAATTTCGGAGGTGGAGCAATTCTCG
CAGtttgttttctttgagaaaGATTAACCTCTTTTTGTAGTAATTTTCGA
TCTTTAACAATCAAAGATGCTTTTAAAAAGCTATCATTAATGTTTGATGG
GTTGGTTAGAGAGGTCTTTGGTTTAGAGTTAGTGATTGTACTTGGAGACA
TGTTTGGTAGAAGTTTTGTACTTGGTGGAAGATGGAGGGAGGAAGGTAAG
TTCTCTTGTTCATTAATTGTAGAGGCATTTCCTTGATTGATGTTGGATTG
ATTCGTAAATGAGTTCTTTGCTTTGGAATTGGTAATCATGCTTGGAAACA
CACTTCCAAGAAAGTTTGAATTATATAGAGCGTATGTGGACGAAGACGAG
TTCTCTAGATAAGCTCTTGCTTGCGTAGAATCCTTAAATGTAGGAACGAT
ACCGTTATTTTTTCCACCTGTAACTGTTTTTTCGAATATATTTCGCTTAT
TTTGATCTTCCAAAGATGCTGATGTATTAGGCGTTGTAGCAAAGTGTTCC
TTTCCAATCAATGAGCCGGTCTGGCAAGTATTGATTGGAGATTGATCCTG
AATTAGATTGCGTTTTCCTCCCGTAGCAATGTCAACTTCATCAATGAATG
CGTCCAACGTATGATGCTTTGGTAACGCCTCAGAAAGGACAGCATCGTTT
GTGTGTAACTCTGGTGCCGTTGCCTCAGCAATGTTTTCAGtttcagaatt
ttcaatttcattaattttataTACATGACCCAATCCGGTTTGATAGTACG
TTGGTAGCAGTTGATCAGTTTGAACTAATTTTGAACATTTCTTTTCCAAT
CTAGATTGAGTCCCAAAAGATCTCAATTTTGGTTTTTCATTTGATTCTTG
TCTAGATTGAGTCCCAATAGTtcttgtttttggtttttcatcTTTCACTG
CTTTCTTTATAGCTAAGGAGTCGATACGAAAGCATGAATTTGCCAAGTAT
AGTGGACTCAATGAAGTAAAGTCGTTTTTCGTTCGTTTAAACACTAGCAA
GAAATGTCGACAAAGTAATCTATTATTTTTCCATTCGTCACAAGTGCATG
ACGGGTAAGACTTTTGGTTACCAAAGGAAACAAAATGCTCACTTTTACTA
GAATGACCACTATTCAGTCGCTTCACAATCGGTGCACAATGGGTCATCAT
GTGGAGAGGCAGACCATATTGATCGTTGAGTGAAGGATTTTCTTTCACGA
TTTTGAGTCCAGAATCATTCAGTTCTTGATTTATAAGGACATATC
Run BLAST on NCBI

transcript from alignment at sc0000010:877428..880124-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00001507 ID=TCONS_00001507|Name=TCONS_00001507|organism=Clytia hemisphaerica|type=transcript|length=2697bp|location=Sequence derived from alignment at sc0000010:877428..880124- (Clytia hemisphaerica)
ACGAGGTCAAAAATCCAGGGTGGTAAAAAATGGGAGGAAAAAATCCAGGG GGTCGCCTTTAAAAAAAAGAAGATCTCCTCAACATTGGGGGTACAAATCT TTTTTTGGAATAGCCCAATAACAGAGCGTCAACTGTAGTAATAAATTCAA CCTTAATAGAAGAGATGAATACTATTTATATTAACAAGAATCTTTAACCA ACAAATTCGGGTCCCGTCATTGGAATATCAGATTCAAAAGCATCTGTCTC AATTTTAATTTCGTTACCAGGAATCAATCCTTGGTCATTGTCCTGGTAGT GAGGAACTTTTAGTTCATTGGATATTGGTTCGACATAGGAAGCGTATTGG TATATTCTGACAGGTGCCTGTTTGCTAGAATTCGTTTGATGTTTCTCTTG TTTATTTGGTGTATGAGTCATGGTACCATGTGATTGTTTTTCGGTACTGA ATTTAATCGAAGGTTTGCTGCCTGATTTTATTGGTTCACTTGGTAACTTT TGTAGTTCGTTTTCTGTTTTACTTGGTTTCAAAAGTTCGCTCGATTTTGA TAATATCTTCTTTTTCAAAAGTTGTTTTGGTGAACTCGTGAAGTCTACCA TTTCGGTAGAAGACAATTTCCGTTTGATTGCAGTATTATTTAGATTTAAA ACTTTTGTTTTTGACGATGGGTGGTCTTGAGACTTGCATCCTCCTACAAT TTCAATGTTATTCGAAGTTTGCTTTGTTACGTACCTTGATTGAATCTTGG ATATCTGGCAACACTTATTCAATTCACAATTGCTGCTGAGGTCCGTTAGA CAGACTTCACAGTACCGAGTTATTATTCGGTTACCATCAATAAGTGTTTT AGTTGATTTGAGTGCTTCTTTTCCGGTCTTTGAATTCTTTCTTCTTGGTT TTCTGTCAATTCCAGTCTTTTGTTGCTGATATGTTTCTGATGATTTATTA GGTGGTTGGCAGCTTTGCACTACAGAGCTTGGTTTTGACTCCATCATCAA TTGATATGGTACATCACAGAGGAAGGGACTCGGATCGATCGACAAATTTA AAGACTTACTATTTGATTCAGGCTGAACGAGGGTTAGCGATTGAGAATGT TCTTTTTGTTTCATTTCGTTCAAAGCTTTCTCGTGAATATTTGATTGTAA TCTACATGATGTCGAATCTGCGCCAATTAGATTCTTATCTGATGTCGAAT TTAAGATAGCTGGATTCTTATTGGTCAAACGCTTAGCTGGTGTCGAATCT GCGCCAGTTTGATTCTTATTAAGTGTTGAATTTAAGTTATCTTAAATTAT CTTAGATTCTTATTGGTTAAACGAGAAAGTATACTATCCATTTGTTTTGG TAAGGGTTTCTGGTCTTTAATGATCAATTTCGGAGGTGGAGCAATTCTCG CAGTTTGTTTTCTTTGAGAAAGATTAACCTCTTTTTGTAGTAATTTTCGA TCTTTAACAATCAAAGATGCTTTTAAAAAGCTATCATTAATGTTTGATGG GTTGGTTAGAGAGGTCTTTGGTTTAGAGTTAGTGATTGTACTTGGAGACA TGTTTGGTAGAAGTTTTGTACTTGGTGGAAGATGGAGGGAGGAAGGTAAG TTCTCTTGTTCATTAATTGTAGAGGCATTTCCTTGATTGATGTTGGATTG ATTCGTAAATGAGTTCTTTGCTTTGGAATTGGTAATCATGCTTGGAAACA CACTTCCAAGAAAGTTTGAATTATATAGAGCGTATGTGGACGAAGACGAG TTCTCTAGATAAGCTCTTGCTTGCGTAGAATCCTTAAATGTAGGAACGAT ACCGTTATTTTTTCCACCTGTAACTGTTTTTTCGAATATATTTCGCTTAT TTTGATCTTCCAAAGATGCTGATGTATTAGGCGTTGTAGCAAAGTGTTCC TTTCCAATCAATGAGCCGGTCTGGCAAGTATTGATTGGAGATTGATCCTG AATTAGATTGCGTTTTCCTCCCGTAGCAATGTCAACTTCATCAATGAATG CGTCCAACGTATGATGCTTTGGTAACGCCTCAGAAAGGACAGCATCGTTT GTGTGTAACTCTGGTGCCGTTGCCTCAGCAATGTTTTCAGTTTCAGAATT TTCAATTTCATTAATTTTATATACATGGCCCAATCCGGTTTGATAGTAAN TTTCCAATTTCATTAATTTTATATACATGACCCAATCCGGTTTGATAGTA CGTTGGTAGCAGTTGATCAGTTTGAACTAATTTTGAACATTTCTTTTCCA ATCTAGATTGAGTCCCAAAAGATCTCAATTTTGGTTTTTCATTTGATTCT TGTCTAGATTGAGTCCCAATAGTTCTTGTTTTTGGTTTTTCATCTTTCAC TGCTTTCTTTATAGCTAAGGAGTCGATACGAAAGCATGAATTTGCCAAGT ATAGTGGACTCAATGAAGTAAAGTCGTTTTTCGTTCGTTTAAACACTAGC AAGAAATGTCGACAAAGTAATCTATTATTTTTCCATTCGTCACAAGTGCA TGACGGGTAAGACTTTTGGTTACCAAAGGAAACAAAATGCTCACTTTTAC TAGAATGACCACTATTCAGTCGCTTCACAATCGGTGCACAATGGGTCATC ATGTGGAGAGGCAGACCATATTGATCGTTGAGTGAAGGATTTTCTTTCAC GATTTTGAGTCCAGAATCATTCAGTTCTTGATTTATAAGGACATATC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000767XLOC_000767Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001507-exon-sc0000010-1575043694:878001..880124TCONS_00001507-exon-sc0000010-1575043694:878001..880124Clytia hemisphaericaexon
TCONS_00001507-exon-sc0000010-1575043694:877428..877948TCONS_00001507-exon-sc0000010-1575043694:877428..877948Clytia hemisphaericaexon
TCONS_00001507-exon-sc0000010-1510915933:878001..880124TCONS_00001507-exon-sc0000010-1510915933:878001..880124Clytia hemisphaericaexon
TCONS_00001507-exon-sc0000010-1510915933:877428..877948TCONS_00001507-exon-sc0000010-1510915933:877428..877948Clytia hemisphaericaexon
TCONS_00001507-exon-sc0000010-1491911889:878001..880124TCONS_00001507-exon-sc0000010-1491911889:878001..880124Clytia hemisphaericaexon
TCONS_00001507-exon-sc0000010-1491911889:877428..877948TCONS_00001507-exon-sc0000010-1491911889:877428..877948Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000010supercontigsc0000010:877428..880124 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.09537 1.12956 0.455009 1.13736 0.00443191 1.03956 0.355996 1.03932 0.197746 0.792992 0.397793 0.604175 0.792042 0.551448 1.59741 0.884879 2.50033 1.80814 0.619071 1.31079 0.133551 1.27779 2.96034 1.68997 0.436146 1.39142 0 0.606599 0.98082 1.35025
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR006564Znf_PMZ
IPR007527Znf_SWIM
Vocabulary: Molecular Function
TermDefinition
GO:0008270zinc ion binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0008270 zinc ion binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00001507 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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