TCONS_00001493 (transcript) - C. hemisphaerica

Overview
NameTCONS_00001493
Unique NameTCONS_00001493
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1900

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00001493 ID=TCONS_00001493|Name=TCONS_00001493|organism=Clytia hemisphaerica|type=transcript|length=1900bp
AATCGATTCCGTGTCGATATCAACAACAATTATATCGATTTCTAGACAGG
GAAATTCTTAAGGGAATTCCAAAACGAACTTCCAAACACATTATATAAAG
CTGCTGGTTTTGGTGAATATTTCAAAACGCTTTTTGATGGATCAGAGAAG
ATTGGGATATCAGAAAATTGTGTTGTGGaaaaATCATGAGTCAAAAAGAG
AGAGACATTGCTGCTTTGGCGAAAACCATTTATGGAGAAGCAAGAGGGGA
AACGCGAGAGGGACAGTATGCAGTTGCACATTCTGTTGTCAACCGATTCC
ATTCTAATAAGTCATGGTTGAAAGGAGACACAATCGAGGCAACATGTAAA
AAACCACAACAATATTCATGCTGGAATTCTAATGACATCAACGCAAGTAA
ACTCCAAAATGCCGGCGCCGAATTCTATCAAATTGCGAAAGAAGTTATTG
ATGGACATCACCATGACAATACAAGAGGGGCGTTACATTACCATGCTGAT
TACGCCAAGGCGGCACACCAATGGGCAGATAACAAAACACCGTGTGCGAC
TATCGGTGCCCATATGTTTTATAATAATATagattgatttgaaaaatctt
ttatttacactcctgtctcacagccccggtggaactttttcccacaatGG
GGATAAAAGTTTCTATCAaagtcccaatggggatagaaattctattgttc
tcgaGCTTAAAATATCCCAGaatatccagtggggatggttttggacagca
aatttttgcattgaatttcgaatggggatgaaatcaaagtcaatttccca
gtggggctgaaattgtagggtattttgtcCACCGGGGATAAAATTTTAGc
taaatttttcagtggggctatGGGGTCCCAGcgagtctgtgacacagggg
tctTTCATTCTTTCTTACAGTCAGTGTACTAATTTTGTCAAGATGGTACA
TTTGAGGGTGAGCTGCAAAAAGTCATACAGTATAAATTGAAATTGtgatc
gtaagaacatttatcAGAGGTCAAATCGAGGGTTCTTTCCTCATTGAATA
TCCAGATATTTCATTGTTGACTGAATGATACTTAACTATATTATCGGCCT
TTTATTTTTTACCAGACCAAAGAGATAATTGAGGTGACACGGAAAGAAAA
TTTAGGGCTGTATAAATTACTCTTGTTTGCCATTGCTATTTTCTTTACTG
TAGAATCTTTTGTGTAATTAGAtccgaaaaatattttccccgatCAGGGG
CACTATACGTTTTCctacttttattacaaaaacaTACATAATGGGGTGGC
TCAACTCTCAAATCTCTAACAGAGTgcatctcacgtttatcgtttgTAGT
ACataccagacgtaattaatcaaACAGTTCGTTCGATTACCAGAACTTAT
CAAACCTTGTCGAACTTATTAATCGGACAACAaatgacaaagttcgatta
aaaataccgttcgattggttcgattaattacaTCTGGTATATAGtgcggc
aatgaattttgagaTTCGTTCGATAAAgttctttgaatttttatgaTTAG
GTTTGTTAAACCtaaagaaattcttaaaatgTTACTCCTAAAgtgacttt
ttacaaaaatttctttgctctcgtggaaaaaatattttagtttttgaaaa
aaaatcttttttaattttttatgaataataTTGTTTTTTAACATGGAAAT
TGATTAACCAGATCAGCCTGCTAACTGAGCTGGCTCTATTTTCTAAGCAA
ATCAATTGACCAGTAGTTTTAAAactgggaaaaaaaattttcttcagtgG
ATTTCTTTTCTTTCGCGAGCGACAGTTCGATTTTGATCGAGGTTTCGATC
GTAAATCGATCGATTGACACattcctgtctcacagccccggtggtaCTTT
Run BLAST on NCBI

transcript from alignment at sc0000010:638305..643125-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00001493 ID=TCONS_00001493|Name=TCONS_00001493|organism=Clytia hemisphaerica|type=transcript|length=4821bp|location=Sequence derived from alignment at sc0000010:638305..643125- (Clytia hemisphaerica)
AATCGATTCCGTGTCGATATCAACAACAATTATATCGATTTCTAGACAGG GAAATTCTTAAGGGAATTCCAAAACGAACTTCCAAACACATTATATAAAG CTGCTGGTTTTGGTGAATATTTCAAAACGCTTTTTGATGGATCAGAGAAG ATTGGGATATCAGAAAATTGTGTTGTGGAAAAGTAAGTTTTTATTTCTCA AAATATGCGAACATTATTGCCCTCTAGACGAGCTGACCCAAAATGCAACC ACATTTGAGTAGCCTGAATATCCAGGCTGTAGAATTTTTTGATTTATCGC TTTGAAAGCGCTTTGTATTTTAAAATTTCAAATTAGTAGCATTTTCCAAT TTTTGGCTGGTTTGTAAAATACACGACACCGACCGAAGAGTAAAAATGTA TGTCACGTGGATTTGCTTCACAAAATTTGACCAAAAAAGATGAATGCGAG AAAAAGTTATATGGGCCTAAATACGAAGTCATATTTGGTGACAATTTGCA AAATTTCATTATGAACATTTCAAAAGTTATGAAGATCGATGGAAAAGTGA CGCATTGGGTTAAAGATAAGAAAAATTGCACAATATTCTTAATTATCTTC TAAATTTCACGCAGTATTAATACTGGATACGTCTACAAACCCTTAGCGGG CGGCGTACTCGTTAAAAACCCTCTTCCCCTTGCAAGGCGATCGCTGCCTT AGGTGTTTATAACAGTAAACATAATTCTCATTAACAGATCATGAGTCAAA AAGAGAGGGACATTGCTGCGTTGGCGAAAACCATTTATGGAGAAGCAAGA GGGGAAACGCGAGAGGGACAGTACGCAGTTGCACATTCTGTTGTCAACCG ATTCCATTCTAATAAGTCATGGTTGAAAGGTTGGTATATCTTATTTTATG CGTGGTAATTAAACCAGTAGAATCTAATTGTCTTGAAATCTCGTTGAGAG TAGAACAGCGATCTATCTTCATAATGTACAGTGCCGTAGGGAAGCATTTT GATATTGGGGGGGGGGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNAATTTTCTCGGGGGCAGTTTTTCTAGAACCAGGTTCTGC ATAGGCTAGTTCTGCATGGAATTATTTCACCCTAAATTTCAGAACATACA AGGCAATTTGGAGGATTGATTGAAAAAATATATACTTTGAAATATATTTT CCTGGCAAATCTTCAAAGCTTCATGAAATTCTTTTTCATTCTTCAAAGGA ATTTCAGTACTTATCCTACCACGCCTTACTTAAGATTTAAGATCTCTTAT TGAACCAAAGCCAAACAGATTTCAATAGATTTATTTTATCAAAACTAAGA TTTTGCCCAGTTAGAGACCATGACTATAAATACTTATTTTAGACCACTTC CTATAAAACAAAACAATCCCAAAGCTTATTATTATTATTATGGCGAGCTA CTTAAATATTTTAAAATGTCGTTCAGGCAACCCCGTCTCTGTAACCCAAT ATAGTCTTGCTTCGAAGGTTACAGCCTCTAGAAGGCAGCTCGTTTGAGTC GAAAAACCTCCCTTTTTTCTCTATAAAGGTTAACCATTGGACCTAAAACT TATGTACATCTGAAATCAGTAGGCTCTAAAGTACCTATGTATCGAGAATA CAGTTTCTAGCACTAAATTCAGTTTTTTCTTCTTCATTTTTCGTCTTTGT TTTATAAAATTTTTAGAATATAATTTTTTAAACGGTATACTATCTGTAAG ATTTGAAGCATTCGTTTAAAAATGGTAAGCGAGACAAACAATAGTGCATA CTTAAAGTCAATAGATTTGTTACCAAGTTACTTTGTTTATGAAGAAATCA AATACAGCTTTATATTACAATGCTCTTGTTTCTGGGAATTCTAAAATGAT CGAAAATGACAAACAAGAAAAAACATATTTTCAAGATTTTGACCATAAAA GTACACGAGAAGAGAAAGTTAATCGATTCCGTGTCGATATCAACAACAAT TATATCGATTTCTAGACAGGGAAATTCTTAAGGGAATTCCAAAACGAACT TCCAAACACATTATATAAAGCTGCTGGTTTTGGTGAATATTTCAAAACGC TTTTTGATGGATCAGAGAAGATTGGGAGAGAAAATTGTGTTGTGGAAAAG TAAGTTTTTATTTCTCAAAATATGCGAACATATTGCCCTCTAGACGAGCT GACCCAAAATGCAACCACTTTTGAGTAGCCTGAATATCCAGGCTGTAGAA TTTTTTGGTTTATCGCCTTGAAAGCGCTTTGGATTTTAAAATTTCAAATC AGTAGCATTTTCCAATTTTTGGCTGGTTTGTAAAATACACGACACCGACA GAAGAGTAAAAATGTATGTCACGTGGATTTGCTTCACAAAATTTGACCAA AAAAGATGAATGCGAGAAAAAGTTATATGGGCCTAGATACGAAGTCATAT TTGGTGACAATTTGCAAATTATGAACATTTCAAAAGTTATGAAGATCGAT GGAAAAGTGACGCATTTGGTTAAAGATAAGAAAAATTGCACAATATTCTT AATTATCTTTTGAATTTCACGCAGTATTAATAGTGGATACGTCTACAAAC CCTTAGCGGGCGGCGTACTCGTCAAAAACCCTCTTCCCCTTGCAAGGCGA TCGCTGCCTTAGGTGTTTATAACAGTAAACATAATTCTCATTAACAGATC ATGAGTCAAAAAGAGAGAGACATTGCTGCTTTGGCGAAAACCATTTATGG AGAAGCAAGAGGGGAAACGCGAGAGGGACAGTATGCAGTTGCACATTCTG TTGTCAACCGATTCCATTCTAATAAGTCATGGTTGAAAGGTTGGTATATC TTATTTTATGTGTGGTAATTAAACCAGTAGAAATCTAAATGTCTTGAAAT CTCGTTGAGAGTAGAACAGCGATCTATCTTCATAATGTACAGTGCCGTAG GGAAGCATTTTGATATTGTAAATTTTGAAATCTAGAGCTCTAAATTGGCT AAAAACATACTCAAAAAATAAATAAAAAAATAAATAATAAAATGATTCGA ATAAAGGCAAATTTTAAAGGTAAAATACTCCATTTTATGAAAAATCACTC TTATTTTTAATTACTGGGGAGGGGGGGGGGGCTAAGCCCCCCCTAGCCCC CTAGCACTCTCTTTATACAAACACTAAGTAAATCTTTCAATTTAGGAGAC ACAATCGAGGCAACATGTAAAAAACCACAACAATATTCATGCTGGAATTC TAATGACATCAACGCAAGTAAACTCCAAAATGCCGGCGCCGAATTCTATC AAATTGCGAAAGAAGTTATTGATGGACATCACCATGACAATACAAGAGGG GCGTTACATTACCATGCTGATTACGCCAAGGCGGCACACCAATGGGCAGA TAACAAAACACCGTGTGCGACTATCGGTGCCCATATGTTTTATAATAATA TAGATTGATTTGAAAAATCTTTTATTTACACTCCTGTCTCACAGCCCCGG TGGAACTTTTTCCCACAATGGGGATAAAAGTTTCTATCAAAGTCCCAATG GGGATAGAAATTCTATTGTTCTCGAGCTTAAAATATCCCAGAATATCCAG TGGGGATGGTTTTGGACAGCAAATTTTTGCATTGAATTTCGAATGGGGAT GAAATCAAAGTCAATTTCCCAGTGGGGCTGAAATTGTAGGGTATTTTGTC CACCGGGGATAAAATTTTAGCTAAATTTTTCAGTGGGGCTATGGGGTCCC AGCGAGTCTGTGACACAGGGGTCTTTCATTCTTTCTTACAGTCAGTGTAC TAATTTTGTCAAGATGGTACATTTGAGGGTGAGCTGCAAAAAGTCATACA GTATAAATTGAAATTGTGATCGTAAGAACATTTATCAGAGGTCAAATCGA GGGTTCTTTCCTCATTGAATATCCAGATATTTCATTGTTGACTGAATGAT ACTTAACTATATTATCGGCCTTTTATTTTTTACCAGACCAAAGAGATAAT TGAGGTGACACGGAAAGAAAATTTAGGGCTGTATAAATTACTCTTGTTTG CCATTGCTATTTTCTTTACTGTAGAATCTTTTGTGTAATTAGATCCGAAA AATATTTTCCCCGATCAGGGGCACTATACGTTTTCCTACTTTTATTACAA AAACATACATAATGGGGTGGCTCAACTCTCAAATCTCTAACAGAGTGCAT CTCACGTTTATCGTTTGTAGTACATACCAGACGTAATTAATCAAACAGTT CGTTCGATTACCAGAACTTATCAAACCTTGTCGAACTTATTAATCGGACA ACAAATGACAAAGTTCGATTAAAAATACCGTTCGATTGGTTCGATTAATT ACATCTGGTATATAGTGCGGCAATGAATTTTGAGATTCGTTCGATAAAGT TCTTTGAATTTTTATGATTAGGTTTGTTAAACCTAAAGAAATTCTTAAAA TGTTACTCCTAAAGTGACTTTTTACAAAAATTTCTTTGCTCTCGTGGAAA AAATATTTTAGTTTTTGAAAAAAAATCTTTTTTAATTTTTTATGAATAAT ATTGTTTTTTAACATGGAAATTGATTAACCAGATCAGCCTGCTAACTGAG CTGGCTCTATTTTCTAAGCAAATCAATTGACCAGTAGTTTTAAAACTGGG AAAAAAAATTTTCTTCAGTGGATTTCTTTTCTTTCGCGAGCGACAGTTCG ATTTTGATCGAGGTTTCGATCGTAAATCGATCGATTGACACATTCCTGTC TCACAGCCCCGGTGGTACTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000759XLOC_000759Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001493-exon-sc0000010-1575043694:642944..643125TCONS_00001493-exon-sc0000010-1575043694:642944..643125Clytia hemisphaericaexon
TCONS_00001493-exon-sc0000010-1575043694:640237..640378TCONS_00001493-exon-sc0000010-1575043694:640237..640378Clytia hemisphaericaexon
TCONS_00001493-exon-sc0000010-1575043694:638305..639880TCONS_00001493-exon-sc0000010-1575043694:638305..639880Clytia hemisphaericaexon
TCONS_00001493-exon-sc0000010-1510915933:642944..643125TCONS_00001493-exon-sc0000010-1510915933:642944..643125Clytia hemisphaericaexon
TCONS_00001493-exon-sc0000010-1510915933:640237..640378TCONS_00001493-exon-sc0000010-1510915933:640237..640378Clytia hemisphaericaexon
TCONS_00001493-exon-sc0000010-1510915933:638305..639880TCONS_00001493-exon-sc0000010-1510915933:638305..639880Clytia hemisphaericaexon
TCONS_00001493-exon-sc0000010-1491911889:642944..643125TCONS_00001493-exon-sc0000010-1491911889:642944..643125Clytia hemisphaericaexon
TCONS_00001493-exon-sc0000010-1491911889:640237..640378TCONS_00001493-exon-sc0000010-1491911889:640237..640378Clytia hemisphaericaexon
TCONS_00001493-exon-sc0000010-1491911889:638305..639880TCONS_00001493-exon-sc0000010-1491911889:638305..639880Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000010supercontigsc0000010:638305..643125 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0 0 0 0 0 0 0 0 0 0.337485 0 0.107432 0.341124 0.171842 0 0 0 0 0 0 0 0 0 0 105.803 66.4727 0 0 0 0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00001493 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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