|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00001492 ID=TCONS_00001492|Name=TCONS_00001492|organism=Clytia hemisphaerica|type=transcript|length=1791bp GTTTTGGTGAATATTTCAAAACGCTTTTTGATGGATCAGAGAAGATTGGG AGAGAAAATTGTGTTGTGGaaaaATCATGAGTCAAAAAGAGAGAGACATT GCTGCTTTGGCGAAAACCATTTATGGAGAAGCAAGAGGGGAAACGCGAGA GGGACAGTATGCAGTTGCACATTCTGTTGTCAACCGATTCCATTCTAATA AGTCATGGTTGAAAGGAGACACAATCGAGGCAACATGTAAAAAACCACAA CAATATTCATGCTGGAATTCTAATGACATCAACGCAAGTAAACTCCAAAA TGCCGGCGCCGAATTCTATCAAATTGCGAAAGAAGTTATTGATGGACATC ACCATGACAATACAAGAGGGGCGTTACATTACCATGCTGATTACGCCAAG GCGGCACACCAATGGGCAGATAACAAAACACCGTGTGCGACTATCGGTGC CCATATGTTTTATAATAATATagattgatttgaaaaatcttttatttaca ctcctgtctcacagccccggtggaactttttcccacaatGGGGATAAAAG TTTCTATCAaagtcccaatggggatagaaattctattgttctcgaGCTTA AAATATCCCAGaatatccagtggggatggttttggacagcaaatttttgc attgaatttcgaatggggatgaaatcaaagtcaatttcccagtggggctg aaattgtagggtattttgtcCACCGGGGATAAAATTTTAGctaaattttt cagtggggctatGGGGTCCCAGcgagtctgtgacacaggggtctTTCATT CTTTCTTACAGTCAGTGTACTAATTTTGTCAAGATGGTACATTTGAGGGT GAGCTGCAAAAAGTCATACAGTATAAATTGAAATTGtgatcgtaagaaca tttatcAGAGGTCAAATCGAGGGTTCTTTCCTCATTGAATATCCAGATAT TTCATTGTTGACTGAATGATACTTAACTATATTATCGGCCTTTTATTTTT TACCAGACCAAAGAGATAATTGAGGTGACACGGAAAGAAAATTTAGGGCT GTATAAATTACTCTTGTTTGCCATTGCTATTTTCTTTACTGTAGAATCTT TTGTGTAATTAGAtccgaaaaatattttccccgatCAGGGGCACTATACG TTTTCctacttttattacaaaaacaTACATAATGGGGTGGCTCAACTCTC AAATCTCTAACAGAGTgcatctcacgtttatcgtttgTAGTACataccag acgtaattaatcaaACAGTTCGTTCGATTACCAGAACTTATCAAACCTTG TCGAACTTATTAATCGGACAACAaatgacaaagttcgattaaaaataccg ttcgattggttcgattaattacaTCTGGTATATAGtgcggcaatgaattt tgagaTTCGTTCGATAAAgttctttgaatttttatgaTTAGGTTTGTTAA ACCtaaagaaattcttaaaatgTTACTCCTAAAgtgactttttacaaaaa tttctttgctctcgtggaaaaaatattttagtttttgaaaaaaaatcttt tttaattttttatgaataataTTGTTTTTTAACATGGAAATTGATTAACC AGATCAGCCTGCTAACTGAGCTGGCTCTATTTTCTAAGCAAATCAATTGA CCAGTAGTTTTAAAactgggaaaaaaaattttcttcagtgGATTTCTTTT CTTTCGCGAGCGACAGTTCGATTTTGATCGAGGTTTCGATCGTAAATCGA TCGATTGACACattcctgtctcacagccccggtggtaCTTT Run BLAST on NCBI transcript from alignment at sc0000010:638305..640999- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00001492 ID=TCONS_00001492|Name=TCONS_00001492|organism=Clytia hemisphaerica|type=transcript|length=2695bp|location=Sequence derived from alignment at sc0000010:638305..640999- (Clytia hemisphaerica) GTTTTGGTGAATATTTCAAAACGCTTTTTGATGGATCAGAGAAGATTGGG
AGAGAAAATTGTGTTGTGGAAAAGTAAGTTTTTATTTCTCAAAATATGCG
AACATATTGCCCTCTAGACGAGCTGACCCAAAATGCAACCACTTTTGAGT
AGCCTGAATATCCAGGCTGTAGAATTTTTTGGTTTATCGCCTTGAAAGCG
CTTTGGATTTTAAAATTTCAAATCAGTAGCATTTTCCAATTTTTGGCTGG
TTTGTAAAATACACGACACCGACAGAAGAGTAAAAATGTATGTCACGTGG
ATTTGCTTCACAAAATTTGACCAAAAAAGATGAATGCGAGAAAAAGTTAT
ATGGGCCTAGATACGAAGTCATATTTGGTGACAATTTGCAAATTATGAAC
ATTTCAAAAGTTATGAAGATCGATGGAAAAGTGACGCATTTGGTTAAAGA
TAAGAAAAATTGCACAATATTCTTAATTATCTTTTGAATTTCACGCAGTA
TTAATAGTGGATACGTCTACAAACCCTTAGCGGGCGGCGTACTCGTCAAA
AACCCTCTTCCCCTTGCAAGGCGATCGCTGCCTTAGGTGTTTATAACAGT
AAACATAATTCTCATTAACAGATCATGAGTCAAAAAGAGAGAGACATTGC
TGCTTTGGCGAAAACCATTTATGGAGAAGCAAGAGGGGAAACGCGAGAGG
GACAGTATGCAGTTGCACATTCTGTTGTCAACCGATTCCATTCTAATAAG
TCATGGTTGAAAGGTTGGTATATCTTATTTTATGTGTGGTAATTAAACCA
GTAGAAATCTAAATGTCTTGAAATCTCGTTGAGAGTAGAACAGCGATCTA
TCTTCATAATGTACAGTGCCGTAGGGAAGCATTTTGATATTGTAAATTTT
GAAATCTAGAGCTCTAAATTGGCTAAAAACATACTCAAAAAATAAATAAA
AAAATAAATAATAAAATGATTCGAATAAAGGCAAATTTTAAAGGTAAAAT
ACTCCATTTTATGAAAAATCACTCTTATTTTTAATTACTGGGGAGGGGGG
GGGGGCTAAGCCCCCCCTAGCCCCCTAGCACTCTCTTTATACAAACACTA
AGTAAATCTTTCAATTTAGGAGACACAATCGAGGCAACATGTAAAAAACC
ACAACAATATTCATGCTGGAATTCTAATGACATCAACGCAAGTAAACTCC
AAAATGCCGGCGCCGAATTCTATCAAATTGCGAAAGAAGTTATTGATGGA
CATCACCATGACAATACAAGAGGGGCGTTACATTACCATGCTGATTACGC
CAAGGCGGCACACCAATGGGCAGATAACAAAACACCGTGTGCGACTATCG
GTGCCCATATGTTTTATAATAATATAGATTGATTTGAAAAATCTTTTATT
TACACTCCTGTCTCACAGCCCCGGTGGAACTTTTTCCCACAATGGGGATA
AAAGTTTCTATCAAAGTCCCAATGGGGATAGAAATTCTATTGTTCTCGAG
CTTAAAATATCCCAGAATATCCAGTGGGGATGGTTTTGGACAGCAAATTT
TTGCATTGAATTTCGAATGGGGATGAAATCAAAGTCAATTTCCCAGTGGG
GCTGAAATTGTAGGGTATTTTGTCCACCGGGGATAAAATTTTAGCTAAAT
TTTTCAGTGGGGCTATGGGGTCCCAGCGAGTCTGTGACACAGGGGTCTTT
CATTCTTTCTTACAGTCAGTGTACTAATTTTGTCAAGATGGTACATTTGA
GGGTGAGCTGCAAAAAGTCATACAGTATAAATTGAAATTGTGATCGTAAG
AACATTTATCAGAGGTCAAATCGAGGGTTCTTTCCTCATTGAATATCCAG
ATATTTCATTGTTGACTGAATGATACTTAACTATATTATCGGCCTTTTAT
TTTTTACCAGACCAAAGAGATAATTGAGGTGACACGGAAAGAAAATTTAG
GGCTGTATAAATTACTCTTGTTTGCCATTGCTATTTTCTTTACTGTAGAA
TCTTTTGTGTAATTAGATCCGAAAAATATTTTCCCCGATCAGGGGCACTA
TACGTTTTCCTACTTTTATTACAAAAACATACATAATGGGGTGGCTCAAC
TCTCAAATCTCTAACAGAGTGCATCTCACGTTTATCGTTTGTAGTACATA
CCAGACGTAATTAATCAAACAGTTCGTTCGATTACCAGAACTTATCAAAC
CTTGTCGAACTTATTAATCGGACAACAAATGACAAAGTTCGATTAAAAAT
ACCGTTCGATTGGTTCGATTAATTACATCTGGTATATAGTGCGGCAATGA
ATTTTGAGATTCGTTCGATAAAGTTCTTTGAATTTTTATGATTAGGTTTG
TTAAACCTAAAGAAATTCTTAAAATGTTACTCCTAAAGTGACTTTTTACA
AAAATTTCTTTGCTCTCGTGGAAAAAATATTTTAGTTTTTGAAAAAAAAT
CTTTTTTAATTTTTTATGAATAATATTGTTTTTTAACATGGAAATTGATT
AACCAGATCAGCCTGCTAACTGAGCTGGCTCTATTTTCTAAGCAAATCAA
TTGACCAGTAGTTTTAAAACTGGGAAAAAAAATTTTCTTCAGTGGATTTC
TTTTCTTTCGCGAGCGACAGTTCGATTTTGATCGAGGTTTCGATCGTAAA
TCGATCGATTGACACATTCCTGTCTCACAGCCCCGGTGGTACTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00001492-exon-sc0000010-1575043694:640927..640999 | TCONS_00001492-exon-sc0000010-1575043694:640927..640999 | Clytia hemisphaerica | exon |
TCONS_00001492-exon-sc0000010-1575043694:640237..640378 | TCONS_00001492-exon-sc0000010-1575043694:640237..640378 | Clytia hemisphaerica | exon |
TCONS_00001492-exon-sc0000010-1575043694:638305..639880 | TCONS_00001492-exon-sc0000010-1575043694:638305..639880 | Clytia hemisphaerica | exon |
TCONS_00001492-exon-sc0000010-1510915933:640927..640999 | TCONS_00001492-exon-sc0000010-1510915933:640927..640999 | Clytia hemisphaerica | exon |
TCONS_00001492-exon-sc0000010-1510915933:640237..640378 | TCONS_00001492-exon-sc0000010-1510915933:640237..640378 | Clytia hemisphaerica | exon |
TCONS_00001492-exon-sc0000010-1510915933:638305..639880 | TCONS_00001492-exon-sc0000010-1510915933:638305..639880 | Clytia hemisphaerica | exon |
TCONS_00001492-exon-sc0000010-1491911889:640927..640999 | TCONS_00001492-exon-sc0000010-1491911889:640927..640999 | Clytia hemisphaerica | exon |
TCONS_00001492-exon-sc0000010-1491911889:640237..640378 | TCONS_00001492-exon-sc0000010-1491911889:640237..640378 | Clytia hemisphaerica | exon |
TCONS_00001492-exon-sc0000010-1491911889:638305..639880 | TCONS_00001492-exon-sc0000010-1491911889:638305..639880 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
sc0000010 | supercontig | sc0000010:638305..640999 - |
Blast
The following BLAST results are available for this feature:
|