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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00001490 ID=TCONS_00001490|Name=TCONS_00001490|organism=Clytia hemisphaerica|type=transcript|length=843bp
CTTACCAGTTCTTTGGGTTCAATTCCAATATTCTTCCCATATTCTTCTTT
CAACACTCTCTCTTCACCATCTTTATGCATCTTCAGTTTGAAACGTGCAA
AATTCTCACCAACAGTCAACGAGATGTAGTTCTCCGTATCAAAACTTTGC
TCCTCTTCAAACTCTGAGAATTCACTATCGAAATCTAAGCTTTTTGGTAC
CTTTTGTTTGTCAGGTGTTATGTAGATGGTGAATTGACTCTTCTTACGAA
CGGTATAGACTAGAGTCCCTTGACCGTTTACGGGAAAGACAGCAGTCCTT
CTTCGAGGCATAGTTCAACTTGGTTATACAGCTCAGCTTCTAACAACAGT
TTCTCTTGAAAACTTATTTGCCGTTTTCGTTGAATGATGCAAGTTTTAAA
TTGTCTCCCTCGTTTAAAAAGCGAAATTCTGAAATCTGAGCTCATAGTTT
TCAAGAAACTGATTGTGCATATcactttttatataaagtatGGGAAAGGG
ACAACATCggcatgttttttataagatacaCAAATGAAATCCCTGTTTGA
ATCACCCGAAACTTTAGAGAATAATTTTCACGGAATTTCAAATAGCTTTG
TTGCAATGTTAAGGagtttcccagctggcacacaacgttgtttcaacgtt
catctaacgttatatggacgttatggacattagaaaaacgttgaaacaac
gttgtgtgccagctgggttgtcTATCACCAGTAAATGGGAATCATCCGCT
GATGAAGTTATGCAACGTAGATTATTTTCTTACTGTTATCGTTATCAATG
TGTGAAtttattaaatcaaaacaacagtCTTGCATTCTAGATA Run BLAST on NCBI transcript from alignment at sc0000010:595718..600900- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00001490 ID=TCONS_00001490|Name=TCONS_00001490|organism=Clytia hemisphaerica|type=transcript|length=5183bp|location=Sequence derived from alignment at sc0000010:595718..600900- (Clytia hemisphaerica)
CTTACCAGTTCTTTGGGTTCAATTCCAATATTCTTCCCATATTCTTCTTT
CAACACTCTCTCTTCACCATCTTTATGCATCTTCAGTTTGAAACGTGCAA
AATTCTCACCAACAGTCAACGAGATGTAGTTCTCCGTATCAAAACTTTGC
TCCTCTTCAAACTCTGAGAATTCACTATCGAAATCTAAGCTTTTTGGTAC
CTTTTGTTTGTCAGGTGTTATGTAGATGGTGAATTGACTCTTCTTACGAA
CGGTATAGACTAGAGTCCCTTGACCGTTTACGGGAAAGACAGCAGTCCTT
CTTCGAGGCATAGCTCACCTTGGTTTAAACAGCTCAGCTTCTAACAACAG
TTTCTCTTGAAAACTTAGTTGCCGTTTTCGTTGAATGATGCACGTTTTAA
ATTGTCTCCCTCGCGGTTTACAAGTAAAGTAGTTTTGAAGATTCGTACAC
ATTATGGCGGCTTTATATAAAGGATTGGAAAGAGGCTGATAGTCACAAGA
TAGTCACAGATTCAAATCACTGTTTGAGTCAGCAAAAACTTTTAGGTTTT
TTTTTTCGCAGAATGTAAAACACCTTTCTAGGAAAGAAGAGGAGCTTGTC
TATTACCAGTAAACTAATTTTCTTTCAAACAGATACACGTTTTTTTATAA
GAACATCCAAATTTTTTGAAGCCTTCAGATGTTCTTAACTTTTTGAGTTT
CAAAATGTCCTTAACATGTTCTTATTTTCCCCCAATTTTTATGTATTTTT
GTCCATTTTCCTAAGTAATTGGCTGTTTTTGAGTCCGCGAAGCCTTAAAA
TGTTCTTAACTTATTCTTAACATTTTGGTCATCGAAGCCTTATGTTCTTA
TATAGTTTGTTCTTATAAAAAAACGTGTAAGATTGTGTTGGAACGAGAAT
TATTTCCTTACTAGTATTTTCGTTTGTTTGTTTGAATTTACTAAACATCA
AAGATCATTAAAACAACATAGAACTAACAAAGCTTTTTTAAGTCTATAAA
AATACTATAAGTTCCTAATTACGAGATTGTCATACGAATCATCATCTCCC
GACAAAAGGTTCATATCGTTTTACCCACTTGCCTTATCATGTTTTACACA
GACTCTATAGGATTATCTTAAAAGAAACTTCGGTGAAAGTATGTTTTGTC
GAATCACTGATAATGTTTTTCGAGAATCTCTTTTCATACAACTAAATCGG
TATTAAACAAATTTGATTTTTTTTTAAATATGAAATAGCCTTTTATTGTC
CAACTCTTTGATACTTTTAAGTCGTTAACTCTTTAACAATTGCGTCTTTT
TATTTTACCGTGCTGAAATACCGCGACTCTTTTACTGGCCGTGCCAATAA
AAGCCTGCAGGTAGACTATCTTGTCAAAATCTTGTTTCAGGGTTCGCACC
AGAAAGTTCATTTGGGGTTCGCTACCACAACTCATTACTGACAAAAGAAA
CGACTTGTGTACGAAAGTATCAGACAAATACAAAGCTATTAGCAAATAAA
TGCCAGGCTGATGGAAAACACCCCCACTGATAAAAATAGGGTTAAACTGT
AGAAGCTCTAAAATATCTTTTAGATTACCCTCGGCTAAGAGGGCTAAATA
AAATTTGATTAAAAACAACACTTTTACAGAAAAAAAATAAAATCAAAATC
ACTACTCAGCCTTCCAAGAATTTTTGATACTCGTCAAGAACAGTTCGTCT
CAAATTAACGAACGTGAAATCGCTATCTGGATAGAATTCTTCCAACTCAT
ATTTTTCTTTGCCTTCTACAAAACCCACATAATGGAAATTTGGGCAGCGA
ATTGCATCATTGAAGTCATATCGATAGCATTGTATGGTTGCGCAGAAATC
ATCAGTGTTATTGTGTAAGCGATGCGTTTGATACCAGTTGGGGCCTATCC
AGGTCATTTGCTCTTCATTGAGATCAAATCTGGTCAAAGGTTGCATTTCT
GTTTGTTCTGGTGGCTGTGTGATCTTGTTGTAGATGTTGCAAGTGATTCT
ACCAAATAGCACTTTAATGATAGCGCATGCTCCTCCATGATTATGGATAG
GGCTTCCTTTTCCTGAGAAAGAAAGCAAATATAGATTCATCAACCCTGGA
CAATCCCCTGACCATGCTAATTTATTTCGCAGTTAGTAATATAAAAGAAG
AAAACATATGAGCGTATAATCTGAAAAAGTNGAATTAAGTTACTTTTATA
GTATAGTTATAGTTTCCCAGGGGCGAGAGACCACCGATGTCTGAAGTCAC
TCTATCGGAAAATTTTCAGAAATTGATATTCATCGACGCTGGTAGAATCA
ACCCTATCTGTTTGTGCGGTGGATAGTTGTTCTAACACTTTGTGATGAAA
ATCATAAATTTTGAATTTATGGAAACTTTCTTTGGACCATCCGGTATACA
TCAAGACACATCAACGAGTAATGCGATTCATGATCTCCCTCTTAAATATT
GAAAACATGTTACTACCACTACGGTTAACTTGCCAAAGCGAGCTGCACTG
AACCATCTCCTTACCTGAAGGCCAGATCTCTAGAACATAGGGAATACCAG
GCGCGGTAGACGATAATGATTTCAAATTTCCAAAAAGTATTTATACCTAT
GGCCTTCAGCGACCGTAGTGCAGTGGTAGAGCTTCCGGCTNCGGCGGTCA
GGACCGAGTGTTACACGTAGGTAAGCAAACTGTTCTTCCTTTTCTTTCAA
CTTTTCGTATAAAGTCATTCCAGGTGTGTTGATGCTGTACCGTATGGCGT
CTGAAAGTTTCGTAATAGGATCTTCTGGAAACTCCAGTTGGAGACCTGCA
GAAGACAATGATTTCTAATTTCCAAAAAGTATTTATACCTATGGCCTTCA
GCGACCGTAGTGCAGTGGTAGAGCTTCCGGCTACGGTTCGCTAGGTTGTG
GGTTCCACCCCAAGCGGGTAATACCAAAGATTCCCAAAATGGTACTTGAT
GCTTCTTTGTTTGATGCTCAGCAATTAAGAGAAGGATCAAGGATAAGTGC
AGCAGTCCAGGGAGTAAAAATTGGCGCCCACCCTTTTTACCTTTGGGTAA
TAGCTGTCGAAAGAAGCCTTCAGACTTCTGACTGCGGTCTTAGACTTACT
TACTTACTCTGGCCTTTAAAACGAGAGAAGAGCAAACGACATATTCGACA
ACAAGATTTGACATGCGGTGATTGCAGTTTGATAAAGACAGAGCATGAGC
AGCACGATATACATTAATTATACTATGGGTTCTGGTATGGTATTATTTAT
TAGGAAACTAAAGACCACAAAAAATTAGACATTGGAAGTCAACTAGATAT
ACCTTTAATATTATCGTAGAGTTCTTTACAGGCAGGTGGTAGACTACTGG
AAAACATGAATTGATCTCGATCAAGATCAAGCAAAGTGACTTTCGAACTA
TCTTTAACGATAGGTGAGAAATTAGTCACGAGAGGGTTGGAATAGAATTG
TAACGTCTGTTCGATTTTGACCAGTCCTCCTGTCACGTCCTCCATTATTT
TCTCTGATTCGGTAACCACGTATTTTCTCTCTTCAAGAAAAATTAAAATA
CAAAATCAATAATTCGAACTCAGTGTCGATTTGTAAAAAAAAAGTCAAAG
GTTTTCTCGGGCATACAGACATACAGGTAGACAGACGGACAGACTTAAAA
TAAACTTTTTAACAAAGTAGACAAAAGTTGATTGATAATATTATTGGTGA
GTTCGAAATCTAACCTGCGTTGAAGAAAATATTGTACTTCTTTCGGATGT
GTTCTTCTTCGCCTTTCGATTTGCCTTCCAAGAAAGGGAATTCTAACAGT
GTTGTTTGAGTCATAACGTGCCCTTTGCCGTATTTCAAGGTCAGTGCATC
GCGGTCGTAACTAAACCAATAAGTGACCTGCAACCAAAAATGAGATCTGA
TTGTAAAGAAAATCGATTGCTTTTAAGCAATACTTGTAAGAAAGAAAAAA
AAGTAACTGAAGTATAAATTTGATCCAACATAATAGCTCTGGGAAAAAGA
GTCAGCCCTGAATCAGTAATTTTAAAAGTCAGTCAGAATGAATGACCCAG
CATTATTGGCAGGTGTACTTATATGGCTTAGACAAATCGTAAAGTTTGTA
CTCTATAATGGCTACTTTTAGGTCTCCTTGGAGAGGTCCAAAAAGGTCCA
TCAGGGTTGATAAAAATGAAAATTTTACAATCGAAAGGGATGTTCGTTGC
TGGAATCTTAGAAAGTAGGGTATCCAAAAACTATGTTACATACAGACTTG
TAATTTAAAAGAATATTTCGCAACGGAATTACAAATTGAATTAGTTAAAA
GTTAATAAAAGTACGAGAAAAAACGATGTGATTGGTACAGCTTACCAGTT
CTTTAGGTTCAATTCCAATATTTTTCCCATATTCTTCTTTCAACACTCTC
TCTTCATCATCTTTATGCATCTTCAGTTTGAAACGTGCAAAATTCTCACC
AACAGTCAACGAGATGTAGTTCTCCGTATCAAAACTTTGCTCCTCTTCAA
ACTCTGAGAATTCACTATCAAAATCCAAGCTTTTTGGTACCTTTTGTTTG
TCAGGTGTTATGTAGATGGTGAATTGACTCTTTTTACGAACGGTATAGAC
TAGAGTCCCTTGACCGTTTACGGGGAAGACAGCAGTCCTTCTTTGAGGCA
TAGTTCAACTTGGTTATACAGCTCAGCTTCTAACAACAGTTTCTCTTGAA
AACTTATTTGCCGTTTTCGTTGAATGATGCAAGTTTTAAATTGTCTCCCT
CGTTTAAAAAGCGAAATTCTGAAATCTGAGCTCATAGTTTTCAAGAAACT
GATTGTGCATATCACTTTTTATATAAAGTATGGGAAAGGGACAACATCGG
CATGTTTTTTATAAGATACACAAATGAAATCCCTGTTTGAATCACCCGAA
ACTTTAGAGAATAATTTTCACGGAATTTCAAATAGCTTTGTTGCAATGTT
AAGGAGTTTCCCAGCTGGCACACAACGTTGTTTCAACGTTCATCTAACGT
TATATGGACGTTATGGACATTAGAAAAACGTTGAAACAACGTTGTGTGCC
AGCTGGGTTGTCTATCACCAGTAAATGGGAATCATCCGCTGATGAAGTTA
TGCAACGTAGATTATTTTCTTACTGTTATCGTTATCAATGTGTGAATTTA
TTAAATCAAAACAACAGTCTTGCATTCTAGATA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00001490-exon-sc0000010-1575043694:600594..600900 | TCONS_00001490-exon-sc0000010-1575043694:600594..600900 | Clytia hemisphaerica | exon |
| TCONS_00001490-exon-sc0000010-1575043694:595718..596253 | TCONS_00001490-exon-sc0000010-1575043694:595718..596253 | Clytia hemisphaerica | exon |
| TCONS_00001490-exon-sc0000010-1510915933:600594..600900 | TCONS_00001490-exon-sc0000010-1510915933:600594..600900 | Clytia hemisphaerica | exon |
| TCONS_00001490-exon-sc0000010-1510915933:595718..596253 | TCONS_00001490-exon-sc0000010-1510915933:595718..596253 | Clytia hemisphaerica | exon |
| TCONS_00001490-exon-sc0000010-1491911889:600594..600900 | TCONS_00001490-exon-sc0000010-1491911889:600594..600900 | Clytia hemisphaerica | exon |
| TCONS_00001490-exon-sc0000010-1491911889:595718..596253 | TCONS_00001490-exon-sc0000010-1491911889:595718..596253 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000010 | supercontig | sc0000010:595718..600900 - |
Blast
The following BLAST results are available for this feature:
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