TCONS_00001489 (transcript) - C. hemisphaerica

Overview
NameTCONS_00001489
Unique NameTCONS_00001489
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1632

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00001489 ID=TCONS_00001489|Name=TCONS_00001489|organism=Clytia hemisphaerica|type=transcript|length=1632bp
caaataattATACTTTTGCTAAGTTGGTCTGTTCTACATTCAAATGAATC
CAGAGTATGAAATCGAACGCAAACAAACTCCATTAtcacaaaaaaacatt
atcttaaagAGTAACAGTTCACATATTTCTCGATTTTCGGCAAAAAGACA
TTATCCCAACATTATTGATGATAAGAAGAATCCTTTTTTCAGAGATTTAA
TAACCAAAATATGAGTTCCAGGTTTCACATGAGTCGCCACAGCTGCAACA
ATACTACCATATGAGTATTTATCCGTCTCTATAATACGACTGAAACTATC
GTCCAAGAAAAATACAGCACCACCAAGATTCGAATAAGATCCAATTAATA
TCATCCATTCTTTAAGTGGATCACCACTATGAATAGGTACTTGTATTCGT
AACCTAAGTTCTGCGTTTTGAGCTCGAGTTCTTAGTCCTTCAGTACGGTC
TTTACGCTGAGTGAATCCGTGAGCTGTTGATATCGTGTAGCcatcatttt
taatgatttcTACAACGTCACGTTGGTTGAAAGGTAGCCTACCACTACTT
GGTATGTTAAAAGTAAAGCATATAGGATCATCTGATACCATTTGAGATTT
AGTGTAAACTGTTTTTGTGAGAGGTTCAACAACAACAGGAGGTAAAGCGA
GAGATAAAGAAGAAGTTTGCATTTCCAACGGAAACAAGTCGTCAATTACT
TgtaaaaaaatctttcgaaCTAAGTGTAAGAATAAGAATCCCATCTGAGC
ATGCCCAAGTAAACTAGGGTGTGAGTTGTCTGCTGCAAATACTTTTGTAA
AGTAAGCGTTGTTCTGAGACATGACTAGTTTCTTGCAGATTAGTTTCCGC
CAGCTAACAGTTGGTATCCAATAGTAACGTGATAGATACGTTGCTCCTTC
CGTTTCGAGGTTATTACATTGCTGCTCCTCGATATGATCTTTACCTCGAA
AGAAATGAGCGTAGATAAGCAGAGGGCGTTTCTCAAGGCGGTATATATTA
CGTGTTAGCAACTCTAACGGTAATGTAGGGGGAACATCTCTATTATCGAA
TCTGTGGTAATCATTTGCTGATAATTCCCAAATAACAAGATCAGTAGAAT
TCCCAAGAACATAATTATTCAAACAATAGGAATAAAAATCACTGCCAATA
GCTCCAATCGAATTATCGTGTACTACCATTCTTGAGCCAGTGACTGGTTC
AACTAATTCATTCCAAAAATGTTCTAACACTCTGAAATAGACTTTATTTT
GATGATGTTCTTTGTATAAAGTTGCTCCTGCTGATATAGAACCACCAAGA
ATAGCCACATTTACATCAATACCATTCAACGctttgaaaactaaattttt
gacACGACTTGAACTTGGCGTTGGATAAGAGACTGATTTATTCACCATTG
TATAATCAATAAGCAATTCATCCAAAGAATTATACTGGTCCTTGAATAGC
CAGTAGTCTAAGGGATTCTGTAATAGTTTCTTTTGTAAACTTAGCAATTT
GACTTCATTCACCATAGCCTCTATGAAGAAGGTATTGTACAGCAATAGAA
CcaacaaaataaacattttgtgaaaattgtTGCGCCTTTCAATTCTTTTA
GTCTTTATGTGTTATTTGTTGCATTCAGCTAG
Run BLAST on NCBI

transcript from alignment at sc0000010:492672..494370-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00001489 ID=TCONS_00001489|Name=TCONS_00001489|organism=Clytia hemisphaerica|type=transcript|length=1699bp|location=Sequence derived from alignment at sc0000010:492672..494370- (Clytia hemisphaerica)
CAAATAATTATACTTTTGCTAAGTTGGTCTGTTCTACATTCAAATGAATC CAGAGTATGAAATCGAACGCAAACAAACTCCATTATCACAAAAAAACATT ATCTTAAAGAGTAACAGTTCACATATTTCTCGATTTTCGGCAAAAAGACA TTATCCCAACATTATTGATGATAAGAAGAATCCTTTTTTCAGAGATTTAA TAACCAAAATATGAGTTCCAGGTTTCACATGAGTCGCCACAGCTGCAACA ATACTACCATATGAGTATTTATCCGTCTCTATAATACGACTGAAACTATC GTCCAAGAAAAATACAGCACCACCAAGATTCGAATAAGATCCAATTAATA TCATCCATTCTTTAAGTGGATCACCACTATGAATAGGTACTTGTATTCGT AACCTAAGTTCTGCGTTTTGAACTCGAGTTCTCAGTCCTTCAGTACGGTN TAGGTACTTGTATTCGTAACCTAAGTTCTGCGTTTTGAGCTCGAGTTCTT AGTCCTTCAGTACGGTCTTTACGCTGAGTGAATCCGTGAGCTGTTGATAT CGTGTAGCCATCATTTTTAATGATTTCTACAACGTCACGTTGGTTGAAAG GTAGCCTACCACTACTTGGTATGTTAAAAGTAAAGCATATAGGATCATCT GATACCATTTGAGATTTAGTGTAAACTGTTTTTGTGAGAGGTTCAACAAC AACAGGAGGTAAAGCGAGAGATAAAGAAGAAGTTTGCATTTCCAACGGAA ACAAGTCGTCAATTACTTGTAAAAAAATCTTTCGAACTAAGTGTAAGAAT AAGAATCCCATCTGAGCATGCCCAAGTAAACTAGGGTGTGAGTTGTCTGC TGCAAATACTTTTGTAAAGTAAGCGTTGTTCTGAGACATGACTAGTTTCT TGCAGATTAGTTTCCGCCAGCTAACAGTTGGTATCCAATAGTAACGTGAT AGATACGTTGCTCCTTCCGTTTCGAGGTTATTACATTGCTGCTCCTCGAT ATGATCTTTACCTCGAAAGAAATGAGCGTAGATAAGCAGAGGGCGTTTCT CAAGGCGGTATATATTACGTGTTAGCAACTCTAACGGTAATGTAGGGGGA ACATCTCTATTATCGAATCTGTGGTAATCATTTGCTGATAATTCCCAAAT AACAAGATCAGTAGAATTCCCAAGAACATAATTATTCAAACAATAGGAAT AAAAATCACTGCCAATAGCTCCAATCGAATTATCGTGTACTACCATTCTT GAGCCAGTGACTGGTTCAACTAATTCATTCCAAAAATGTTCTAACACTCT GAAATAGACTTTATTTTGATGATGTTCTTTGTATAAAGTTGCTCCTGCTG ATATAGAACCACCAAGAATAGCCACATTTACATCAATACCATTCAACGCT TTGAAAACTAAATTTTTGACACGACTTGAACTTGGCGTTGGATAAGAGAC TGATTTATTCACCATTGTATAATCAATAAGCAATTCATCCAAAGAATTAT ACTGGTCCTTGAATAGCCAGTAGTCTAAGGGATTCTGTAATAGTTTCTTT TGTAAACTTAGCAATTTGACTTCATTCACCATAGCCTCTATGAAGAAGGT ATTGTACAGCAATAGAACCAACAAAATAAACATTTTGTGAAAATTGTTGC GCCTTTCAATTCTTTTAGTCTTTATGTGTTATTTGTTGCATTCAGCTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000756XLOC_000756Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001489-exon-sc0000010-1575043694:493985..494370TCONS_00001489-exon-sc0000010-1575043694:493985..494370Clytia hemisphaericaexon
TCONS_00001489-exon-sc0000010-1575043694:492672..493917TCONS_00001489-exon-sc0000010-1575043694:492672..493917Clytia hemisphaericaexon
TCONS_00001489-exon-sc0000010-1510915933:493985..494370TCONS_00001489-exon-sc0000010-1510915933:493985..494370Clytia hemisphaericaexon
TCONS_00001489-exon-sc0000010-1510915933:492672..493917TCONS_00001489-exon-sc0000010-1510915933:492672..493917Clytia hemisphaericaexon
TCONS_00001489-exon-sc0000010-1491911889:493985..494370TCONS_00001489-exon-sc0000010-1491911889:493985..494370Clytia hemisphaericaexon
TCONS_00001489-exon-sc0000010-1491911889:492672..493917TCONS_00001489-exon-sc0000010-1491911889:492672..493917Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000010supercontigsc0000010:492672..494370 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0 0 0 0 0.403461 0.345388 1.44241 1.65045 0.220599 0.156141 1.21244 1.10419 1.25189 0 0.587516 2.56756 1.1604 0.968762 0 0 0.626739 0.617281 0.514551 0.636729 0.281064 0.621135 0.170931 0.0912112 0 0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR013830SGNH_hydro
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00001489 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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