|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00001489 ID=TCONS_00001489|Name=TCONS_00001489|organism=Clytia hemisphaerica|type=transcript|length=1632bp
caaataattATACTTTTGCTAAGTTGGTCTGTTCTACATTCAAATGAATC
CAGAGTATGAAATCGAACGCAAACAAACTCCATTAtcacaaaaaaacatt
atcttaaagAGTAACAGTTCACATATTTCTCGATTTTCGGCAAAAAGACA
TTATCCCAACATTATTGATGATAAGAAGAATCCTTTTTTCAGAGATTTAA
TAACCAAAATATGAGTTCCAGGTTTCACATGAGTCGCCACAGCTGCAACA
ATACTACCATATGAGTATTTATCCGTCTCTATAATACGACTGAAACTATC
GTCCAAGAAAAATACAGCACCACCAAGATTCGAATAAGATCCAATTAATA
TCATCCATTCTTTAAGTGGATCACCACTATGAATAGGTACTTGTATTCGT
AACCTAAGTTCTGCGTTTTGAGCTCGAGTTCTTAGTCCTTCAGTACGGTC
TTTACGCTGAGTGAATCCGTGAGCTGTTGATATCGTGTAGCcatcatttt
taatgatttcTACAACGTCACGTTGGTTGAAAGGTAGCCTACCACTACTT
GGTATGTTAAAAGTAAAGCATATAGGATCATCTGATACCATTTGAGATTT
AGTGTAAACTGTTTTTGTGAGAGGTTCAACAACAACAGGAGGTAAAGCGA
GAGATAAAGAAGAAGTTTGCATTTCCAACGGAAACAAGTCGTCAATTACT
TgtaaaaaaatctttcgaaCTAAGTGTAAGAATAAGAATCCCATCTGAGC
ATGCCCAAGTAAACTAGGGTGTGAGTTGTCTGCTGCAAATACTTTTGTAA
AGTAAGCGTTGTTCTGAGACATGACTAGTTTCTTGCAGATTAGTTTCCGC
CAGCTAACAGTTGGTATCCAATAGTAACGTGATAGATACGTTGCTCCTTC
CGTTTCGAGGTTATTACATTGCTGCTCCTCGATATGATCTTTACCTCGAA
AGAAATGAGCGTAGATAAGCAGAGGGCGTTTCTCAAGGCGGTATATATTA
CGTGTTAGCAACTCTAACGGTAATGTAGGGGGAACATCTCTATTATCGAA
TCTGTGGTAATCATTTGCTGATAATTCCCAAATAACAAGATCAGTAGAAT
TCCCAAGAACATAATTATTCAAACAATAGGAATAAAAATCACTGCCAATA
GCTCCAATCGAATTATCGTGTACTACCATTCTTGAGCCAGTGACTGGTTC
AACTAATTCATTCCAAAAATGTTCTAACACTCTGAAATAGACTTTATTTT
GATGATGTTCTTTGTATAAAGTTGCTCCTGCTGATATAGAACCACCAAGA
ATAGCCACATTTACATCAATACCATTCAACGctttgaaaactaaattttt
gacACGACTTGAACTTGGCGTTGGATAAGAGACTGATTTATTCACCATTG
TATAATCAATAAGCAATTCATCCAAAGAATTATACTGGTCCTTGAATAGC
CAGTAGTCTAAGGGATTCTGTAATAGTTTCTTTTGTAAACTTAGCAATTT
GACTTCATTCACCATAGCCTCTATGAAGAAGGTATTGTACAGCAATAGAA
CcaacaaaataaacattttgtgaaaattgtTGCGCCTTTCAATTCTTTTA
GTCTTTATGTGTTATTTGTTGCATTCAGCTAG Run BLAST on NCBI transcript from alignment at sc0000010:492672..494370- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00001489 ID=TCONS_00001489|Name=TCONS_00001489|organism=Clytia hemisphaerica|type=transcript|length=1699bp|location=Sequence derived from alignment at sc0000010:492672..494370- (Clytia hemisphaerica)
CAAATAATTATACTTTTGCTAAGTTGGTCTGTTCTACATTCAAATGAATC
CAGAGTATGAAATCGAACGCAAACAAACTCCATTATCACAAAAAAACATT
ATCTTAAAGAGTAACAGTTCACATATTTCTCGATTTTCGGCAAAAAGACA
TTATCCCAACATTATTGATGATAAGAAGAATCCTTTTTTCAGAGATTTAA
TAACCAAAATATGAGTTCCAGGTTTCACATGAGTCGCCACAGCTGCAACA
ATACTACCATATGAGTATTTATCCGTCTCTATAATACGACTGAAACTATC
GTCCAAGAAAAATACAGCACCACCAAGATTCGAATAAGATCCAATTAATA
TCATCCATTCTTTAAGTGGATCACCACTATGAATAGGTACTTGTATTCGT
AACCTAAGTTCTGCGTTTTGAACTCGAGTTCTCAGTCCTTCAGTACGGTN
TAGGTACTTGTATTCGTAACCTAAGTTCTGCGTTTTGAGCTCGAGTTCTT
AGTCCTTCAGTACGGTCTTTACGCTGAGTGAATCCGTGAGCTGTTGATAT
CGTGTAGCCATCATTTTTAATGATTTCTACAACGTCACGTTGGTTGAAAG
GTAGCCTACCACTACTTGGTATGTTAAAAGTAAAGCATATAGGATCATCT
GATACCATTTGAGATTTAGTGTAAACTGTTTTTGTGAGAGGTTCAACAAC
AACAGGAGGTAAAGCGAGAGATAAAGAAGAAGTTTGCATTTCCAACGGAA
ACAAGTCGTCAATTACTTGTAAAAAAATCTTTCGAACTAAGTGTAAGAAT
AAGAATCCCATCTGAGCATGCCCAAGTAAACTAGGGTGTGAGTTGTCTGC
TGCAAATACTTTTGTAAAGTAAGCGTTGTTCTGAGACATGACTAGTTTCT
TGCAGATTAGTTTCCGCCAGCTAACAGTTGGTATCCAATAGTAACGTGAT
AGATACGTTGCTCCTTCCGTTTCGAGGTTATTACATTGCTGCTCCTCGAT
ATGATCTTTACCTCGAAAGAAATGAGCGTAGATAAGCAGAGGGCGTTTCT
CAAGGCGGTATATATTACGTGTTAGCAACTCTAACGGTAATGTAGGGGGA
ACATCTCTATTATCGAATCTGTGGTAATCATTTGCTGATAATTCCCAAAT
AACAAGATCAGTAGAATTCCCAAGAACATAATTATTCAAACAATAGGAAT
AAAAATCACTGCCAATAGCTCCAATCGAATTATCGTGTACTACCATTCTT
GAGCCAGTGACTGGTTCAACTAATTCATTCCAAAAATGTTCTAACACTCT
GAAATAGACTTTATTTTGATGATGTTCTTTGTATAAAGTTGCTCCTGCTG
ATATAGAACCACCAAGAATAGCCACATTTACATCAATACCATTCAACGCT
TTGAAAACTAAATTTTTGACACGACTTGAACTTGGCGTTGGATAAGAGAC
TGATTTATTCACCATTGTATAATCAATAAGCAATTCATCCAAAGAATTAT
ACTGGTCCTTGAATAGCCAGTAGTCTAAGGGATTCTGTAATAGTTTCTTT
TGTAAACTTAGCAATTTGACTTCATTCACCATAGCCTCTATGAAGAAGGT
ATTGTACAGCAATAGAACCAACAAAATAAACATTTTGTGAAAATTGTTGC
GCCTTTCAATTCTTTTAGTCTTTATGTGTTATTTGTTGCATTCAGCTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00001489-exon-sc0000010-1575043694:493985..494370 | TCONS_00001489-exon-sc0000010-1575043694:493985..494370 | Clytia hemisphaerica | exon |
| TCONS_00001489-exon-sc0000010-1575043694:492672..493917 | TCONS_00001489-exon-sc0000010-1575043694:492672..493917 | Clytia hemisphaerica | exon |
| TCONS_00001489-exon-sc0000010-1510915933:493985..494370 | TCONS_00001489-exon-sc0000010-1510915933:493985..494370 | Clytia hemisphaerica | exon |
| TCONS_00001489-exon-sc0000010-1510915933:492672..493917 | TCONS_00001489-exon-sc0000010-1510915933:492672..493917 | Clytia hemisphaerica | exon |
| TCONS_00001489-exon-sc0000010-1491911889:493985..494370 | TCONS_00001489-exon-sc0000010-1491911889:493985..494370 | Clytia hemisphaerica | exon |
| TCONS_00001489-exon-sc0000010-1491911889:492672..493917 | TCONS_00001489-exon-sc0000010-1491911889:492672..493917 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000010 | supercontig | sc0000010:492672..494370 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR013830 | SGNH_hydro |
Blast
The following BLAST results are available for this feature:
|
