TCONS_00001481 (transcript) - C. hemisphaerica

Overview
NameTCONS_00001481
Unique NameTCONS_00001481
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1338

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00001481 ID=TCONS_00001481|Name=TCONS_00001481|organism=Clytia hemisphaerica|type=transcript|length=1338bp
ttttcatcTTGGAACTCTTTCTTTCTATTCAGAGAAAATCTCTATTACAG
AATTATGTTTTTCGTGGCAATTTTTACAACATTGCTGACAGCTACACCGT
CTAATGCTGGTGATATTGTCAGCATTCTGGAGAGACTTTCTATCAGCACT
GAAGGGATAGAATTTCCGCATTGCGCTTTGACCAAAGAATTTTTATCAAC
TGCAAATTCAGTTTATGGTTGTGAACGGGTTATTCAACAATATCCGATAT
GTAATAAATCATTGGTTGTTGCTTATTCCGAATTGGAACCACTGGTTTAT
CGGAATACGTCAGGTGAAGTTGTAGGTATTTTACCAGacatcCTCCAAGA
GACGCTCATCAAACGATGTTGTTTGGGTTGCAACAAGTTAGAGTTTCtcc
caccaaaagatttcatgAAGAAATTCACCGACCAACTCGTGTCCGATAAT
AATACTATCCATAAAGCGGACATCATAATTCCTGCAGAACACATTGATGG
CAAACGAGAAATCGTGCTGAGTCATCATTTCTcaaaactgacaaaatttg
aAAGTATTTACTTTATCGCGAAGACAAAATCAACTGGTACTAAAGAGTTG
GTATATACTTTATTTACGAGCGCATTGAAGAGTTGGCCGTTATTCGTTAT
TGCATTGATAATGGCTGTTTGTGCTGGAACCATCATTTGGTTGTCGGACA
TGTGGAAGAACAAAGAACAATTTCCACGTGGATTTCCTCAAGGACCATTC
GAAGGTTTTTGGTGGGCTTATGTTTCAATGACTACAGTTGGATACGGTGA
TCGGACACCATCGACCATTTTCGGACGTTTATTTGCTGTAGTGTGGATTT
TGATTGGGATCACCATTTTCAACATGTTTACAGCGACCATCACTTCAGCA
TTAAACAAAGAATTGTTAGATCGCATTACTTATTCACCACAAGATAAAGA
TATTGGGATGATAGCAAATTTGAAAGTCGTTGAAAATGcaattcttaaaa
attatgCGACACCAAAAGCTTTTGATAATATGGAGAAACTGTTAGAGGCA
CTGAAAACAGAATCCATTAACGCCATTGCTATTGATGACATCGCATACAA
GAAATATTACCCAACAATCCGTCCACCTTTTGCCGTTCAACTAGAATTAC
CAGTCAATGGTTATTCCATTGGCTTTGCATGTAACAATATCACACTTAAG
AAAATGCAAGATACTTTCAACAGAAATTCGATGGAGATTCTACGTTTGCC
CACAAATACAAAACCGATTGATTTCCAAAGTCAACTACACGTTCCAAACG
ATATGCCAGAAATTACCAAAGTATTTTCAATCAAGAAC
Run BLAST on NCBI

transcript from alignment at sc0000010:447025..453352-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00001481 ID=TCONS_00001481|Name=TCONS_00001481|organism=Clytia hemisphaerica|type=transcript|length=6328bp|location=Sequence derived from alignment at sc0000010:447025..453352- (Clytia hemisphaerica)
TTTTCATCTTGGAACTCTTTCTTTCTATTCAGAGAAAATCTCTATTACAG
AATTATGTTTTTCGTGGCAATTTTTACAACATTGCTGACAGCTACACCGT
CTAATGCTGGTGATATTGTCAGCATTCTGGAGAGACTTTCTATCAGCACT
GAAGGGATAGAATTTCCGCATTGCGCTTTGACCAAAGAATTTTTATCAAC
TGCAAATTCAGTTTATGGTTGTGAACGGGTTATTCAACAATATCCGATAT
GTAATAAATCATTGGTTGTTGCTTATTCCGAATTGGAACCACTGGTTTAT
CGGAATACGTCAGGTGAAGTTGTAGGTATTTTACCAGGTTAGTAGTAAAA
CACCGATTTATTTTTCGAAAATATTGGATTTGTATTGTATCATGATTTAT
TTAAGCTAAGCATATCAAAGNCGAAAATATTGGATTTGTACAATACAATG
ATTTTTTTAAGCTAAGCATATCAAAGTTTTGATTGGATAATGGTCAAGTA
ATTTTTTACTTTTTACCTTGAAACAATAGTATATGTGTACAGGCCCGGCG
GAACAACCGTAAAAATGGGGAGGCTAAAGGCTCAAAATGAGATAAAATTC
GCTAGGAATTTTTTTATTCATATAATTATATTTCACAGGTCTATCGACCT
CTATGAAATAATTTTAGATTTATAAAATATTGTCTAATTCTTCATCTGTC
GTCCAGTCGTCAGAAGATATGGACAGAGAAGACGTTGTTTTGGTCTTTGT
CCAAGGTTTTCGAATTTGGCGAAGGTTTGTTCTAGGGCTTCCTCTTACAT
GCCAAACGAAATCATAATTTTTTAAATTAATTTTTTTCGCCTTTTGGCAC
ATATCTTTAATAATTTTTCTTTCGTTGATGGTGAAGTCGTCTGTAATGCT
AAAGCCACCAATTTCATTGAATCGTTTCANNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNTATAATAATATTTCGTTTTCTTGATTCGATG
TCTCTTTCTTCATTCTTGTTTTCTTGTTGGTGTTCTCTCACTGCTGATTT
GAAATTATCCTTGTGTTTCTTTGTTATTTCAGCGTATGTTTTTTCTGATG
TTTTTTCTATGTAATTCGTCGTTTGCTTTATTTCTTCTTTTATAATCTAC
TTGGTTTTTATTTCAAAGTCAGCCATCTTATTGGTTAAGATATTTTCGAT
ATCGTTCTTAAGGCTGCGGTTCTTGGCTAGCTGGTTTTTGAGCTTTTTAA
TGACGTCGTCCTTCTTCTCAATCTCTCTCTGCATCATATGATACAAGTTC
TCACCTATTTTACTCGTTAGAGATCGTGTTATCCGCACGCAATTCTGACA
TAGATATTGTTCGTTATAAGTGTTGGCAAAAATTTGCAGCTGATAAAGCG
GTAATTGTGTGCACTCGTAGTGTACCATGCGGTGGCATTTTCGGCATTTT
AGACGGTTTTGGTCTTCGTCATCTGAGGTGAGAGTGCATGTTTGGTTTTG
TTTAGCTTCTTCAAATGGTTGTTTTTCTTGCTTTTTGTCGGTTTTTTCGT
TCATGTTTTTGATTTTGCTAAATTTCAACCATTTCAATTTGAGAAAAAAT
TCTCTTCTTGTTCAAAAGTAGGGAGACTTGGTAGACGTCCACCGGGCCTG
TGTTAGTTTGAAAATTGGCACAAATAGGTTCTTTATAGAGTCAAAGATTT
GCACCCTTTTTGGGCATTTTATTATGATATCAGTTTACACCCCTGTAAAA
CATTATTTTATAAAAGATTTCAAAATAATTTAAATTGTTTTTCTTGAAAG
ATCATGAAAAGTAGTTAAGAAAAAATTGAGTCGTTTCTAAAATTGGGTCA
ATTAGACCCCATAAAATTAATGTATTTTTTGAGCTGATTCTAATCCATAC
TAAAAGCTAAAATTAACGAAATTTGTTAAATTCTTTGCCTCTTTTAATCT
TAAAGGGTGAAGAAATTTGGCTTTACCTTTTTGAATCTCCCTGCAACGAT
TATTGCTTTTTCATGAAAAACTAAAACATATATATCTGTACCTTATTTCT
GTAATTTTTTTCAGACATCCTCCAAGAGACGCTCATCAAACGATGTTGTT
TGGGTTGCAACAAGTTAGAGTTTCTCCCACCAAAAGATTTCATGAAGAAA
TTCACCGACCAACTCGTGTCCGATAATAATACTATCCATAAAGCGGACAT
CATAATTCCTGCAGAACACATTGATGGCAAACGAGAAATCGTGCTGAGTC
ATCATTTCTCAAAACTGACAAAATTTGAAAGTATTTACTTTATCGCGAAG
ACAAAATCAACTGGTACTAAAGAGTTGGTATATACTTTATTTACGAGCGC
ATTGAAGAGTTGGCCGTTATTCGTTATTGCATTGATAATGGCTGTTTGTG
CTGGAACCATCATTTGGTTGTCGGTAAGTGATCCTTTGGCTGTTTGAATT
AAAGTTCAGGGCAATGCCTTTGATTTTTATACAAGATTCAGATTTCAGAT
TTTCTAAATACATTTCAAATTTTCTAAATACATTCCTCAAGCTCGGATGA
CGTTTGAGAATTAGGCGATTTATTAGCACTTTTCCTTTTGTGAAATCGAA
AATTTAACCCTTTGGAATTCCATCGAAATTTTGACTTACAGAGGCTCCTG
TGAGCTGAATTTTGCTTGAAATACCTTCAAATTGTATACATAACGACGCA
AAATTTAACATAAATATCAAAAATGCAATACAAAACTACAGGCAAAAAGT
CTGTATTAAAAATTGTGGCTCTTTGAAGTGTTTTCTGTATTATGATCCAT
CTACTACGACGAGCTGCAGCGAAAGTGTTAATTGGCTTGTTGCTTATCCA
GGCTGAATCAATTTTCTGCAAGTCAACCATGTGTTTAATAACTAATTCTC
TCATAATTCTCGATATTTCTACAGGACATGTGGAAGAACAAAGAACAATT
TCCACGTGGATTTCCTCAAGGACCATTCGAAGGTTTTTGGTGGGCTTATG
TTTCAATGACTACAGTTGGGTAATACATCATGTCCATCAATATCTCTAAA
ACAAAGGCTGGAGTGTATGTTTTAAGCAATGGGCCATTCCAATTTTATAT
CCATACAGGTGGTGGAGGAACATTTCTAAGGGGTAATCCGAAAAAAAATT
CCAAGGGGTATTTTTTCATTTTTTCAAGGAGTTATTCTAAGATTTTCAGG
GGATAAAAAATGATTTTAGTTTGTCCACCCTCAGTTTAAGGTATGAAAAT
AATTTTTCAAAGGGTATTTTTGCAAATTTTGCCATTTTTCCAGGAGGTAT
CCACACATTTACAATAGTTTTTCTGACTCGAAAAGGTTCGTCCACCCCCC
CCCCCTGTATGGTTTTTTAATGAAACATCCCAATTTTCAGTTAAAGGTTT
AAAACAGCCTTGTCTGTGTCTCAATGTAATAGCCAAGGATGTGGAAGTTG
GCTTGATTTTCGATTTGGTGATCTAGCTACAATTTATCCCTTAATTTATA
CGCAAAAGCACCAACTTTTTTACACTTTTCGTGTGAATTTTGACTTTAAA
AGCTCATAAGCAGAGAACAAGTTGGTCAAATTTAAAAAGTGATGGCTCAA
ATTTTAAGTTAGGATATCTACTTTCTAAATATCAAAACTCCAAGCACTTT
GGGACATTTGTTCGGCCTCAAGACGTCGGGAAACGTCTGAATTTTTTCGT
GGGTCACCCGGTAGACTATTAGTAACAAAATCAACAAGCCCAAAAACCTT
TTAATTATTCTATTCCAATTTTAGATACGGTGATCGGACACCATCGACCA
TTTTCGGACGTTTATTTGCTGTAGTGTGGATTTTGATTGGGATCACCATT
TTCAACATGTTTACAGCGACCATCACTTCAGCATTAAACAAAGAATTGTT
AGATCGCATTACTTATTCACCACAAGATAAAGATGTAAGCTTTAACACTG
ATTTTATTTTTAAAGTTAGTAACTAAAATCTTAATTTAGTAACCTTATGT
CAGTAAGTACCCTTTTTCCTTGATTATCTAGAAGTAGAGAAAGTCCCCGA
AAATGACTTATTCTTTATGCACCTAGACCTGGAGACTTATCAACATCTCA
CCGCGGGGAAACTTTTCCAAAGAGTAGTCAAATCCCAGTCTTCAAGGAAA
GGGTTTTGGTCGATATACATTACGTAATGATTTCGTATACTCATCACTTT
TAGATTGGGATGATAGCAAATTTGAAAGTCGTTGAAAATGCAATTCTTAA
AAATTATGCGACACCAAAAGGTAACATCTTTCTTACCTCGAACAACTTTT
TGGCCCATTCAATTGACAATGCTTTATAAACTTTATCCCATTCCTCGAAA
TCTCCTTAACTCGAACAAGCTTGTGTTCCCCCGTGCGTGTTCGAGTTATG
TTCGACTGTACTTACATGTATTTTGTTTTACTCACCAATCTTTTATAGCT
TTTGATAATATGGAGAAACTGTTAGAGGCACTGAAAACAGAATCCATTAA
CGGTATGTTTTTCGAATCAACATTTAACCCTATTCGTACTATGGGGGGCT
GTTTCTGTTCGGGGTGAAACTATTGTTGATAGCCCCTGAAATGATAGAAC
TTTTTGCATGAAATTTTCTATAAATTCATAACTTTTTCATAACTTTCATT
CATAACTTTATGAGTGACGTCAGCAAAAAATATTTTGTTAAAAGTTACCT
TATATGACAAGGATCTTGTGTGCCAAATTTCATCCAAAAAGACCCACTAG
ATCAAATGTTAAGGGGTGGTACAGGAACAGCCCCCTACTTTTGAACCGCC
CCTAAAAGCATTGTTTGAATAAGGTTAACATTCTGTTTGCTCTTTATACA
AAATTTGTTTGTTTCATGATAATAGGTCTGTCACAAGATTCTGTGCATTT
TTTATCATCCAATACACTTCAATTGGATGCTTTGTAAGGGGCCAAAGAAC
ATCTTTCGCTAGCCTTTGAAATTCAATACCATTTATGAAACCTGAAAGAT
TTTGTATCAAAGCCTATATAGGAACATCTGAACATCTATTCACCACCAGT
TTTCTAAAATTTGAACTAGAGATTCATCTAATAAGTCACTTGTTTAAAAT
TTCTTAACATGTTATTTCGTTTCAGCCATTGCTATTGATGACATCGCATA
CAAGAAATATTACCCAACAATCCGTCCACCTTTTGCCGTTCAACTAGAAT
TACCAGTCAATGGTTATTCCATTGGCTTTGCATGTAACAATATCACACTT
AAGAAAATGCAAGATACTTTCAACAGAAATTCGATGGAGATTCTACGTTT
GCCCACAGTAAGTTAAAGACGCAACTTGCTCAATTTTCATTGGAATACAG
CTTGATATTTTAAATCTAGTTTACTCTCCATAAATTGAACGAATTCTCCC
CCCCCCATACATTTTCGAGCTACAGAAAGAGGATTCTGCCTTTTTTGATT
GCTAAGGACTCCATGAAATAAAAATTTCTTGCTTGAAATTTTGAATAACT
TCGACATGGTTCTTTTTTCCTGATTTTCAAATCCTAAAAGAGCACTTCAC
CCCTTAGATGAAAGAATTTTATAGCGATTCACATACTAGCCACTACCAAC
AAAATATGCAAGAGTTCGTACGTTTGTTCATTAACGAACATCTAGTATAA
ACATTTTCAGACAGTTTTTACAAATTTTGGTAAGAAAACCTCTAGTCGCA
TTGGATAATAACCATTCAATAATCATTGCAATTTTGAAAAGCTAAAAGAT
TGTTACTGTACATAGCCCGATTTTGTGTTTGTTTTTTTCTGTAGAATACA
AAACCGATTGATTTCCAAAGTCAACTACACGTTCCAAACGATATGCCAGA
AATTACCAAAGTATTTTCAATCAAGAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000753XLOC_000753Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001481-exon-sc0000010-1575043694:453016..453352TCONS_00001481-exon-sc0000010-1575043694:453016..453352Clytia hemisphaericaexon
TCONS_00001481-exon-sc0000010-1575043694:450480..450838TCONS_00001481-exon-sc0000010-1575043694:450480..450838Clytia hemisphaericaexon
TCONS_00001481-exon-sc0000010-1575043694:449884..449978TCONS_00001481-exon-sc0000010-1575043694:449884..449978Clytia hemisphaericaexon
TCONS_00001481-exon-sc0000010-1575043694:448969..449128TCONS_00001481-exon-sc0000010-1575043694:448969..449128Clytia hemisphaericaexon
TCONS_00001481-exon-sc0000010-1575043694:448633..448699TCONS_00001481-exon-sc0000010-1575043694:448633..448699Clytia hemisphaericaexon
TCONS_00001481-exon-sc0000010-1575043694:448401..448454TCONS_00001481-exon-sc0000010-1575043694:448401..448454Clytia hemisphaericaexon
TCONS_00001481-exon-sc0000010-1575043694:447596..447777TCONS_00001481-exon-sc0000010-1575043694:447596..447777Clytia hemisphaericaexon
TCONS_00001481-exon-sc0000010-1575043694:447025..447108TCONS_00001481-exon-sc0000010-1575043694:447025..447108Clytia hemisphaericaexon
TCONS_00001481-exon-sc0000010-1510915933:453016..453352TCONS_00001481-exon-sc0000010-1510915933:453016..453352Clytia hemisphaericaexon
TCONS_00001481-exon-sc0000010-1510915933:450480..450838TCONS_00001481-exon-sc0000010-1510915933:450480..450838Clytia hemisphaericaexon
TCONS_00001481-exon-sc0000010-1510915933:449884..449978TCONS_00001481-exon-sc0000010-1510915933:449884..449978Clytia hemisphaericaexon
TCONS_00001481-exon-sc0000010-1510915933:448969..449128TCONS_00001481-exon-sc0000010-1510915933:448969..449128Clytia hemisphaericaexon
TCONS_00001481-exon-sc0000010-1510915933:448633..448699TCONS_00001481-exon-sc0000010-1510915933:448633..448699Clytia hemisphaericaexon
TCONS_00001481-exon-sc0000010-1510915933:448401..448454TCONS_00001481-exon-sc0000010-1510915933:448401..448454Clytia hemisphaericaexon
TCONS_00001481-exon-sc0000010-1510915933:447596..447777TCONS_00001481-exon-sc0000010-1510915933:447596..447777Clytia hemisphaericaexon
TCONS_00001481-exon-sc0000010-1510915933:447025..447108TCONS_00001481-exon-sc0000010-1510915933:447025..447108Clytia hemisphaericaexon
TCONS_00001481-exon-sc0000010-1491911889:453016..453352TCONS_00001481-exon-sc0000010-1491911889:453016..453352Clytia hemisphaericaexon
TCONS_00001481-exon-sc0000010-1491911889:450480..450838TCONS_00001481-exon-sc0000010-1491911889:450480..450838Clytia hemisphaericaexon
TCONS_00001481-exon-sc0000010-1491911889:449884..449978TCONS_00001481-exon-sc0000010-1491911889:449884..449978Clytia hemisphaericaexon
TCONS_00001481-exon-sc0000010-1491911889:448969..449128TCONS_00001481-exon-sc0000010-1491911889:448969..449128Clytia hemisphaericaexon
TCONS_00001481-exon-sc0000010-1491911889:448633..448699TCONS_00001481-exon-sc0000010-1491911889:448633..448699Clytia hemisphaericaexon
TCONS_00001481-exon-sc0000010-1491911889:448401..448454TCONS_00001481-exon-sc0000010-1491911889:448401..448454Clytia hemisphaericaexon
TCONS_00001481-exon-sc0000010-1491911889:447596..447777TCONS_00001481-exon-sc0000010-1491911889:447596..447777Clytia hemisphaericaexon
TCONS_00001481-exon-sc0000010-1491911889:447025..447108TCONS_00001481-exon-sc0000010-1491911889:447025..447108Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000010supercontigsc0000010:447025..453352 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.52434	0.976992	1.21001	1.86798e-06	0.183867	0.654185	0	0.0631417	0	0.153158	0.736508	0.295797	1.97806	1.69689	0.229725	0	0	0.0293344	4.51545	4.67668	0.94211	1.2361	0.420749	0.539862	1.84051	1.02049	0.120791	0.610123	0.620948	0.00255484
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00001481 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top