TCONS_00001481 (transcript) - C. hemisphaerica

Overview
NameTCONS_00001481
Unique NameTCONS_00001481
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1338

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00001481 ID=TCONS_00001481|Name=TCONS_00001481|organism=Clytia hemisphaerica|type=transcript|length=1338bp
ttttcatcTTGGAACTCTTTCTTTCTATTCAGAGAAAATCTCTATTACAG
AATTATGTTTTTCGTGGCAATTTTTACAACATTGCTGACAGCTACACCGT
CTAATGCTGGTGATATTGTCAGCATTCTGGAGAGACTTTCTATCAGCACT
GAAGGGATAGAATTTCCGCATTGCGCTTTGACCAAAGAATTTTTATCAAC
TGCAAATTCAGTTTATGGTTGTGAACGGGTTATTCAACAATATCCGATAT
GTAATAAATCATTGGTTGTTGCTTATTCCGAATTGGAACCACTGGTTTAT
CGGAATACGTCAGGTGAAGTTGTAGGTATTTTACCAGacatcCTCCAAGA
GACGCTCATCAAACGATGTTGTTTGGGTTGCAACAAGTTAGAGTTTCtcc
caccaaaagatttcatgAAGAAATTCACCGACCAACTCGTGTCCGATAAT
AATACTATCCATAAAGCGGACATCATAATTCCTGCAGAACACATTGATGG
CAAACGAGAAATCGTGCTGAGTCATCATTTCTcaaaactgacaaaatttg
aAAGTATTTACTTTATCGCGAAGACAAAATCAACTGGTACTAAAGAGTTG
GTATATACTTTATTTACGAGCGCATTGAAGAGTTGGCCGTTATTCGTTAT
TGCATTGATAATGGCTGTTTGTGCTGGAACCATCATTTGGTTGTCGGACA
TGTGGAAGAACAAAGAACAATTTCCACGTGGATTTCCTCAAGGACCATTC
GAAGGTTTTTGGTGGGCTTATGTTTCAATGACTACAGTTGGATACGGTGA
TCGGACACCATCGACCATTTTCGGACGTTTATTTGCTGTAGTGTGGATTT
TGATTGGGATCACCATTTTCAACATGTTTACAGCGACCATCACTTCAGCA
TTAAACAAAGAATTGTTAGATCGCATTACTTATTCACCACAAGATAAAGA
TATTGGGATGATAGCAAATTTGAAAGTCGTTGAAAATGcaattcttaaaa
attatgCGACACCAAAAGCTTTTGATAATATGGAGAAACTGTTAGAGGCA
CTGAAAACAGAATCCATTAACGCCATTGCTATTGATGACATCGCATACAA
GAAATATTACCCAACAATCCGTCCACCTTTTGCCGTTCAACTAGAATTAC
CAGTCAATGGTTATTCCATTGGCTTTGCATGTAACAATATCACACTTAAG
AAAATGCAAGATACTTTCAACAGAAATTCGATGGAGATTCTACGTTTGCC
CACAAATACAAAACCGATTGATTTCCAAAGTCAACTACACGTTCCAAACG
ATATGCCAGAAATTACCAAAGTATTTTCAATCAAGAAC
Run BLAST on NCBI

transcript from alignment at sc0000010:447025..453352-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00001481 ID=TCONS_00001481|Name=TCONS_00001481|organism=Clytia hemisphaerica|type=transcript|length=6328bp|location=Sequence derived from alignment at sc0000010:447025..453352- (Clytia hemisphaerica)
TTTTCATCTTGGAACTCTTTCTTTCTATTCAGAGAAAATCTCTATTACAG AATTATGTTTTTCGTGGCAATTTTTACAACATTGCTGACAGCTACACCGT CTAATGCTGGTGATATTGTCAGCATTCTGGAGAGACTTTCTATCAGCACT GAAGGGATAGAATTTCCGCATTGCGCTTTGACCAAAGAATTTTTATCAAC TGCAAATTCAGTTTATGGTTGTGAACGGGTTATTCAACAATATCCGATAT GTAATAAATCATTGGTTGTTGCTTATTCCGAATTGGAACCACTGGTTTAT CGGAATACGTCAGGTGAAGTTGTAGGTATTTTACCAGGTTAGTAGTAAAA CACCGATTTATTTTTCGAAAATATTGGATTTGTATTGTATCATGATTTAT TTAAGCTAAGCATATCAAAGNCGAAAATATTGGATTTGTACAATACAATG ATTTTTTTAAGCTAAGCATATCAAAGTTTTGATTGGATAATGGTCAAGTA ATTTTTTACTTTTTACCTTGAAACAATAGTATATGTGTACAGGCCCGGCG GAACAACCGTAAAAATGGGGAGGCTAAAGGCTCAAAATGAGATAAAATTC GCTAGGAATTTTTTTATTCATATAATTATATTTCACAGGTCTATCGACCT CTATGAAATAATTTTAGATTTATAAAATATTGTCTAATTCTTCATCTGTC GTCCAGTCGTCAGAAGATATGGACAGAGAAGACGTTGTTTTGGTCTTTGT CCAAGGTTTTCGAATTTGGCGAAGGTTTGTTCTAGGGCTTCCTCTTACAT GCCAAACGAAATCATAATTTTTTAAATTAATTTTTTTCGCCTTTTGGCAC ATATCTTTAATAATTTTTCTTTCGTTGATGGTGAAGTCGTCTGTAATGCT AAAGCCACCAATTTCATTGAATCGTTTCANNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNTATAATAATATTTCGTTTTCTTGATTCGATG TCTCTTTCTTCATTCTTGTTTTCTTGTTGGTGTTCTCTCACTGCTGATTT GAAATTATCCTTGTGTTTCTTTGTTATTTCAGCGTATGTTTTTTCTGATG TTTTTTCTATGTAATTCGTCGTTTGCTTTATTTCTTCTTTTATAATCTAC TTGGTTTTTATTTCAAAGTCAGCCATCTTATTGGTTAAGATATTTTCGAT ATCGTTCTTAAGGCTGCGGTTCTTGGCTAGCTGGTTTTTGAGCTTTTTAA TGACGTCGTCCTTCTTCTCAATCTCTCTCTGCATCATATGATACAAGTTC TCACCTATTTTACTCGTTAGAGATCGTGTTATCCGCACGCAATTCTGACA TAGATATTGTTCGTTATAAGTGTTGGCAAAAATTTGCAGCTGATAAAGCG GTAATTGTGTGCACTCGTAGTGTACCATGCGGTGGCATTTTCGGCATTTT AGACGGTTTTGGTCTTCGTCATCTGAGGTGAGAGTGCATGTTTGGTTTTG TTTAGCTTCTTCAAATGGTTGTTTTTCTTGCTTTTTGTCGGTTTTTTCGT TCATGTTTTTGATTTTGCTAAATTTCAACCATTTCAATTTGAGAAAAAAT TCTCTTCTTGTTCAAAAGTAGGGAGACTTGGTAGACGTCCACCGGGCCTG TGTTAGTTTGAAAATTGGCACAAATAGGTTCTTTATAGAGTCAAAGATTT GCACCCTTTTTGGGCATTTTATTATGATATCAGTTTACACCCCTGTAAAA CATTATTTTATAAAAGATTTCAAAATAATTTAAATTGTTTTTCTTGAAAG ATCATGAAAAGTAGTTAAGAAAAAATTGAGTCGTTTCTAAAATTGGGTCA ATTAGACCCCATAAAATTAATGTATTTTTTGAGCTGATTCTAATCCATAC TAAAAGCTAAAATTAACGAAATTTGTTAAATTCTTTGCCTCTTTTAATCT TAAAGGGTGAAGAAATTTGGCTTTACCTTTTTGAATCTCCCTGCAACGAT TATTGCTTTTTCATGAAAAACTAAAACATATATATCTGTACCTTATTTCT GTAATTTTTTTCAGACATCCTCCAAGAGACGCTCATCAAACGATGTTGTT TGGGTTGCAACAAGTTAGAGTTTCTCCCACCAAAAGATTTCATGAAGAAA TTCACCGACCAACTCGTGTCCGATAATAATACTATCCATAAAGCGGACAT CATAATTCCTGCAGAACACATTGATGGCAAACGAGAAATCGTGCTGAGTC ATCATTTCTCAAAACTGACAAAATTTGAAAGTATTTACTTTATCGCGAAG ACAAAATCAACTGGTACTAAAGAGTTGGTATATACTTTATTTACGAGCGC ATTGAAGAGTTGGCCGTTATTCGTTATTGCATTGATAATGGCTGTTTGTG CTGGAACCATCATTTGGTTGTCGGTAAGTGATCCTTTGGCTGTTTGAATT AAAGTTCAGGGCAATGCCTTTGATTTTTATACAAGATTCAGATTTCAGAT TTTCTAAATACATTTCAAATTTTCTAAATACATTCCTCAAGCTCGGATGA CGTTTGAGAATTAGGCGATTTATTAGCACTTTTCCTTTTGTGAAATCGAA AATTTAACCCTTTGGAATTCCATCGAAATTTTGACTTACAGAGGCTCCTG TGAGCTGAATTTTGCTTGAAATACCTTCAAATTGTATACATAACGACGCA AAATTTAACATAAATATCAAAAATGCAATACAAAACTACAGGCAAAAAGT CTGTATTAAAAATTGTGGCTCTTTGAAGTGTTTTCTGTATTATGATCCAT CTACTACGACGAGCTGCAGCGAAAGTGTTAATTGGCTTGTTGCTTATCCA GGCTGAATCAATTTTCTGCAAGTCAACCATGTGTTTAATAACTAATTCTC TCATAATTCTCGATATTTCTACAGGACATGTGGAAGAACAAAGAACAATT TCCACGTGGATTTCCTCAAGGACCATTCGAAGGTTTTTGGTGGGCTTATG TTTCAATGACTACAGTTGGGTAATACATCATGTCCATCAATATCTCTAAA ACAAAGGCTGGAGTGTATGTTTTAAGCAATGGGCCATTCCAATTTTATAT CCATACAGGTGGTGGAGGAACATTTCTAAGGGGTAATCCGAAAAAAAATT CCAAGGGGTATTTTTTCATTTTTTCAAGGAGTTATTCTAAGATTTTCAGG GGATAAAAAATGATTTTAGTTTGTCCACCCTCAGTTTAAGGTATGAAAAT AATTTTTCAAAGGGTATTTTTGCAAATTTTGCCATTTTTCCAGGAGGTAT CCACACATTTACAATAGTTTTTCTGACTCGAAAAGGTTCGTCCACCCCCC CCCCCTGTATGGTTTTTTAATGAAACATCCCAATTTTCAGTTAAAGGTTT AAAACAGCCTTGTCTGTGTCTCAATGTAATAGCCAAGGATGTGGAAGTTG GCTTGATTTTCGATTTGGTGATCTAGCTACAATTTATCCCTTAATTTATA CGCAAAAGCACCAACTTTTTTACACTTTTCGTGTGAATTTTGACTTTAAA AGCTCATAAGCAGAGAACAAGTTGGTCAAATTTAAAAAGTGATGGCTCAA ATTTTAAGTTAGGATATCTACTTTCTAAATATCAAAACTCCAAGCACTTT GGGACATTTGTTCGGCCTCAAGACGTCGGGAAACGTCTGAATTTTTTCGT GGGTCACCCGGTAGACTATTAGTAACAAAATCAACAAGCCCAAAAACCTT TTAATTATTCTATTCCAATTTTAGATACGGTGATCGGACACCATCGACCA TTTTCGGACGTTTATTTGCTGTAGTGTGGATTTTGATTGGGATCACCATT TTCAACATGTTTACAGCGACCATCACTTCAGCATTAAACAAAGAATTGTT AGATCGCATTACTTATTCACCACAAGATAAAGATGTAAGCTTTAACACTG ATTTTATTTTTAAAGTTAGTAACTAAAATCTTAATTTAGTAACCTTATGT CAGTAAGTACCCTTTTTCCTTGATTATCTAGAAGTAGAGAAAGTCCCCGA AAATGACTTATTCTTTATGCACCTAGACCTGGAGACTTATCAACATCTCA CCGCGGGGAAACTTTTCCAAAGAGTAGTCAAATCCCAGTCTTCAAGGAAA GGGTTTTGGTCGATATACATTACGTAATGATTTCGTATACTCATCACTTT TAGATTGGGATGATAGCAAATTTGAAAGTCGTTGAAAATGCAATTCTTAA AAATTATGCGACACCAAAAGGTAACATCTTTCTTACCTCGAACAACTTTT TGGCCCATTCAATTGACAATGCTTTATAAACTTTATCCCATTCCTCGAAA TCTCCTTAACTCGAACAAGCTTGTGTTCCCCCGTGCGTGTTCGAGTTATG TTCGACTGTACTTACATGTATTTTGTTTTACTCACCAATCTTTTATAGCT TTTGATAATATGGAGAAACTGTTAGAGGCACTGAAAACAGAATCCATTAA CGGTATGTTTTTCGAATCAACATTTAACCCTATTCGTACTATGGGGGGCT GTTTCTGTTCGGGGTGAAACTATTGTTGATAGCCCCTGAAATGATAGAAC TTTTTGCATGAAATTTTCTATAAATTCATAACTTTTTCATAACTTTCATT CATAACTTTATGAGTGACGTCAGCAAAAAATATTTTGTTAAAAGTTACCT TATATGACAAGGATCTTGTGTGCCAAATTTCATCCAAAAAGACCCACTAG ATCAAATGTTAAGGGGTGGTACAGGAACAGCCCCCTACTTTTGAACCGCC CCTAAAAGCATTGTTTGAATAAGGTTAACATTCTGTTTGCTCTTTATACA AAATTTGTTTGTTTCATGATAATAGGTCTGTCACAAGATTCTGTGCATTT TTTATCATCCAATACACTTCAATTGGATGCTTTGTAAGGGGCCAAAGAAC ATCTTTCGCTAGCCTTTGAAATTCAATACCATTTATGAAACCTGAAAGAT TTTGTATCAAAGCCTATATAGGAACATCTGAACATCTATTCACCACCAGT TTTCTAAAATTTGAACTAGAGATTCATCTAATAAGTCACTTGTTTAAAAT TTCTTAACATGTTATTTCGTTTCAGCCATTGCTATTGATGACATCGCATA CAAGAAATATTACCCAACAATCCGTCCACCTTTTGCCGTTCAACTAGAAT TACCAGTCAATGGTTATTCCATTGGCTTTGCATGTAACAATATCACACTT AAGAAAATGCAAGATACTTTCAACAGAAATTCGATGGAGATTCTACGTTT GCCCACAGTAAGTTAAAGACGCAACTTGCTCAATTTTCATTGGAATACAG CTTGATATTTTAAATCTAGTTTACTCTCCATAAATTGAACGAATTCTCCC CCCCCCATACATTTTCGAGCTACAGAAAGAGGATTCTGCCTTTTTTGATT GCTAAGGACTCCATGAAATAAAAATTTCTTGCTTGAAATTTTGAATAACT TCGACATGGTTCTTTTTTCCTGATTTTCAAATCCTAAAAGAGCACTTCAC CCCTTAGATGAAAGAATTTTATAGCGATTCACATACTAGCCACTACCAAC AAAATATGCAAGAGTTCGTACGTTTGTTCATTAACGAACATCTAGTATAA ACATTTTCAGACAGTTTTTACAAATTTTGGTAAGAAAACCTCTAGTCGCA TTGGATAATAACCATTCAATAATCATTGCAATTTTGAAAAGCTAAAAGAT TGTTACTGTACATAGCCCGATTTTGTGTTTGTTTTTTTCTGTAGAATACA AAACCGATTGATTTCCAAAGTCAACTACACGTTCCAAACGATATGCCAGA AATTACCAAAGTATTTTCAATCAAGAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000753XLOC_000753Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001481-exon-sc0000010-1575043694:453016..453352TCONS_00001481-exon-sc0000010-1575043694:453016..453352Clytia hemisphaericaexon
TCONS_00001481-exon-sc0000010-1575043694:450480..450838TCONS_00001481-exon-sc0000010-1575043694:450480..450838Clytia hemisphaericaexon
TCONS_00001481-exon-sc0000010-1575043694:449884..449978TCONS_00001481-exon-sc0000010-1575043694:449884..449978Clytia hemisphaericaexon
TCONS_00001481-exon-sc0000010-1575043694:448969..449128TCONS_00001481-exon-sc0000010-1575043694:448969..449128Clytia hemisphaericaexon
TCONS_00001481-exon-sc0000010-1575043694:448633..448699TCONS_00001481-exon-sc0000010-1575043694:448633..448699Clytia hemisphaericaexon
TCONS_00001481-exon-sc0000010-1575043694:448401..448454TCONS_00001481-exon-sc0000010-1575043694:448401..448454Clytia hemisphaericaexon
TCONS_00001481-exon-sc0000010-1575043694:447596..447777TCONS_00001481-exon-sc0000010-1575043694:447596..447777Clytia hemisphaericaexon
TCONS_00001481-exon-sc0000010-1575043694:447025..447108TCONS_00001481-exon-sc0000010-1575043694:447025..447108Clytia hemisphaericaexon
TCONS_00001481-exon-sc0000010-1510915933:453016..453352TCONS_00001481-exon-sc0000010-1510915933:453016..453352Clytia hemisphaericaexon
TCONS_00001481-exon-sc0000010-1510915933:450480..450838TCONS_00001481-exon-sc0000010-1510915933:450480..450838Clytia hemisphaericaexon
TCONS_00001481-exon-sc0000010-1510915933:449884..449978TCONS_00001481-exon-sc0000010-1510915933:449884..449978Clytia hemisphaericaexon
TCONS_00001481-exon-sc0000010-1510915933:448969..449128TCONS_00001481-exon-sc0000010-1510915933:448969..449128Clytia hemisphaericaexon
TCONS_00001481-exon-sc0000010-1510915933:448633..448699TCONS_00001481-exon-sc0000010-1510915933:448633..448699Clytia hemisphaericaexon
TCONS_00001481-exon-sc0000010-1510915933:448401..448454TCONS_00001481-exon-sc0000010-1510915933:448401..448454Clytia hemisphaericaexon
TCONS_00001481-exon-sc0000010-1510915933:447596..447777TCONS_00001481-exon-sc0000010-1510915933:447596..447777Clytia hemisphaericaexon
TCONS_00001481-exon-sc0000010-1510915933:447025..447108TCONS_00001481-exon-sc0000010-1510915933:447025..447108Clytia hemisphaericaexon
TCONS_00001481-exon-sc0000010-1491911889:453016..453352TCONS_00001481-exon-sc0000010-1491911889:453016..453352Clytia hemisphaericaexon
TCONS_00001481-exon-sc0000010-1491911889:450480..450838TCONS_00001481-exon-sc0000010-1491911889:450480..450838Clytia hemisphaericaexon
TCONS_00001481-exon-sc0000010-1491911889:449884..449978TCONS_00001481-exon-sc0000010-1491911889:449884..449978Clytia hemisphaericaexon
TCONS_00001481-exon-sc0000010-1491911889:448969..449128TCONS_00001481-exon-sc0000010-1491911889:448969..449128Clytia hemisphaericaexon
TCONS_00001481-exon-sc0000010-1491911889:448633..448699TCONS_00001481-exon-sc0000010-1491911889:448633..448699Clytia hemisphaericaexon
TCONS_00001481-exon-sc0000010-1491911889:448401..448454TCONS_00001481-exon-sc0000010-1491911889:448401..448454Clytia hemisphaericaexon
TCONS_00001481-exon-sc0000010-1491911889:447596..447777TCONS_00001481-exon-sc0000010-1491911889:447596..447777Clytia hemisphaericaexon
TCONS_00001481-exon-sc0000010-1491911889:447025..447108TCONS_00001481-exon-sc0000010-1491911889:447025..447108Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000010supercontigsc0000010:447025..453352 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.52434 0.976992 1.21001 1.86798e-06 0.183867 0.654185 0 0.0631417 0 0.153158 0.736508 0.295797 1.97806 1.69689 0.229725 0 0 0.0293344 4.51545 4.67668 0.94211 1.2361 0.420749 0.539862 1.84051 1.02049 0.120791 0.610123 0.620948 0.00255484
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00001481 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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