TCONS_00001470 (transcript) - C. hemisphaerica

Overview
NameTCONS_00001470
Unique NameTCONS_00001470
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2693

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00001470 ID=TCONS_00001470|Name=TCONS_00001470|organism=Clytia hemisphaerica|type=transcript|length=2693bp
AAATACCAATTTTTAAGCTCTTAGATCATATGATGATGTTACACACACCT
TTTAAGCTTAATATTTTACATATTTCGTATAAAGTTTACGTGCCATCAAA
AATATATCAACAGTGAAGAAGTGCGGTGATCTTATATGGTAAAGTAAACA
ACGGTGTTACGGAATCGGTAGGAATTGACACTCCTTCTTCGAGGCTtggt
atgaaaaaaatttgaagtaaaagaAACATTTATGCCATCAACCTTCCCCT
TTTGATTTGAGCTTTGACGACACAAGTgcttctttgatatttttttgaga
attttctttCTAGAAGAATTAAATTTTCGATTTAAAGATGACTTCAGAAT
CCAACGAACAAACTACTCAAGAAGTATCAACTTCTGCTTCAGAGACACCA
AAGCAGGAGACTCCCGAAGTTGAAGTAGCTCCAGCCGCACAGGCAGCGCC
GCAACCAGAAGTCCCAGCCGCAGAAGTAGCCCTACAACAAGAAGCTCCAG
TCCCACAAGCAGAGGCTTCTGTCGCTGAAGCAGCTCCACAACCGGAAGCT
CCAGCAGCAGAAGCAGCCCCACAACCAAAAGCTCCAGCCGCAGAAGCAGC
CCTTCAAGCAGAGGCTCCAGTTACAGAAGCAGTCCCTCAACCAGAAGCTC
CAGTCGCAGAAGCAGCCCCTCAACCAGAAGCCCCAGTCACAGAAGCAGTC
CCGCAACCAGAGGCTCCAGTCGCAGAAGCAGTCCCTCAACCAGAAGCTCC
AGTCGCAGAAGCAGTCCCTCAACCAGAAGCTCCAGTCGCAGAAGCAGTCC
CACAACCAGAAGCTCTAGCTCCACAAGCAGGGGCTCCTGTCGCTGAAGCA
GCCCCACAACCAGAAGCTCCTGTCGCTGAAGCAGCCCCACAACCAGAGGC
TCCCATCGCAGAAGCAGTTCCACAAGCAGAGGCTCCAGTTGTTGAAGCAG
CCCCACAACCAGAGGCTCCAGTCGCAGAAACAGCCCCACAATCAGAAGCT
CCAGCCGCAGAAGCAGCCCTGGAAGCAGAAGCTCCAGTTGCAGAAGCAGT
CCCTCAACCAGAAGCTCAAGTCCCACAAGCAGAAGCTCTTGTTGCTGAAG
CAGCCCCACAGCCAGAGGCTCCCATTGCAGAAGCAGGTCCACAAGCACAG
GCTCCAGTTGTTGAAGCAGCCCCACAACCAGAGGCTCCAGTCGCAGAAGC
AGCCCAACAACCAGAGGCTCCAGTTGCAGAAGGAGTCCCTCAACTAGAAG
TACCAGTTGCAGAAGCAGCCCCACAACCAGAGGCTCCAGTTGCAGAAGGA
GTCTCTCAACCAGAAGCTCCAGTTGCAGAAGCAGCCCCACAACCAGAGGC
TCCAGTTCCAGAAGTTCCAGTCGCAGAAGCAGCCCCACAACCGGAGGCTC
CTGCTGCAGAAGTAGCCCCACAACCAGAATCTCCAGTCCCACAATCAGAG
GCCCCAGCCGCAGAAGCAGCCCCACAACCAGAAACTCCTGCTCAACAGCC
AGAAGCTCCAGCCGTAGAAGCAGCCCCCCAACCGGAAGCTCCAGCTGCAG
AAGTATCCCAACCTTCAGAGCCAGTCGCATGACTTTGTGTGTGTTTATAG
TATGATGTATGAGTATGATTAAATGAATACCCCTTAGTGCCTTAGCCGTT
TTTCCATATAACCTTAAACCGTATTTGTTTTCTTAATGACTTTTAAACTT
CTTTTGAATGAATATATTGATGTATGAGGTACGGGGGTATCATTTGATTC
CTTGTATATTCTTTGGAANTCCAGCCGTAGAAGCAGCCCCTCAACCGGAA
GCTCCAGCTGCAGAAGTATCCCAACCTTCAGAGCCAGTCGCATGACTTTG
TGTGTGTTTATAGTATGATGTATGAGTATGATTAAATGAATACCCCTTAG
TGCCTTAGCCGTTTTTCCATATAACCTTAAACCGTATTTGTTTTCTTAAT
GACTTTTAAACTTCTTTTGAATGAATATATTGATGTATGAGGTACGGGGG
TATCATTTGATTGCTTGTATATTCTTTGGAAGGCTGCTTGGATATCGGTG
GAaaagagaaaattcaaaaacgCTCCTCATCAATACTTTTGAATTCACCG
CATCGACCTAAGGTTCCTCCTTGATGCTGGCAAGGATTACTAAGCAACAT
TGGTTATTGTGAATTCAGTTCCAATACAAATAACGTTGACAGCTCATAGA
GTTGAAGAATATAATTTCTTGATAAATGGAGAATCTGTGAGAAATCATAC
AATAAGAAGCCATCCAAAGACGATAAAGTGAGCAACAGTTACACTTTATT
GGGAAAAATAGTCGAATCGATAATGAATGACATTTATAAGGGATTTATTT
TTGAATCAGTTACCTGACTGAGAAAAACCTTGGATCTTTTTCCTGAAGAG
GTATTGTTTATTTGAATAACAAGTTTTTCGGCTTTGGTCATGGTAAAAAA
GTAGTTTTTCTATTTCGCACATTCTTTGTAATTATTGTTAAATAGATTAT
TTATTTAAGAATATCAATTGTGACTTTTCTCtgtcataaaaatatttaat
gcctaattttcatcaaatcaaaaaagtgaagaaacaGTTAAAGTCCAATG
CTGTTTTCCATCTTTTTGGCATTCCAAATAGATTGATTGATCTGTTGAAC
TGGCATTTTGGTACACGTAAcgtaagaaaattttgaaaacttc
Run BLAST on NCBI

transcript from alignment at sc0000010:409793..412917-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00001470 ID=TCONS_00001470|Name=TCONS_00001470|organism=Clytia hemisphaerica|type=transcript|length=3125bp|location=Sequence derived from alignment at sc0000010:409793..412917- (Clytia hemisphaerica)
AAATACCAATTTTTAAGCTCTTAGATCATATGATGATGTTACACACACCT
TTTAAGCTTAATATTTTACATATTTCGTATAAAGTTTACGTGCCATCAAA
AATATATCAACAGTGAAGAAGTGCGGTGATCTTATATGGTAAAGTAAACA
ACGGTGTTACGGAATCGGTAGGAATTGACACTCCTTCTTCGAGGCTTGGT
ATGAAAAAAATTTGAAGTAAAAGAAACATTTATGCCATCAACCTTCCCCT
TTTGATTTGAGCTTTGACGACACAAGTGCTTCTTTGATATTTTTTTGAGA
ATTTTCTTTCTAGAAGAATTAAATTTTCGATTTAAAGATGACTTCAGGTA
AGTTTGGAGAATAATATTACCTTGAGATTAAAAAAACAACACCTATTTTA
TTGAATAAGAAAGAAACAGGTTGCAGAATATAGAATTAAAAAGTAAAATC
AACTATCTGTTTTTTAATCTGTTTTAGTATGCATGACCATTGAAAAACAT
CAATCCTTCTAGGGTGAAAAAATTAGGAGTAATATGGTATCTTGTAAAAG
ACGTCATTTTTTTAATGTCTCTCTTTTTTAGAATCCAACGAACAAACTAC
TCAAGAAGTATCAACTTCTGCTTCAGAGACACCAAAGCAGGAGACTCCCG
AAGTTGAAGTAGCTCCAGCCGCACAGGCAGCGCCGCAACCAGAAGTCCCA
GCCGCAGAAGTAGCCCTACAACAAGAAGCTCCAGTCCCACAAGCAGAGGC
TTCTGTCGCTGAAGCAGCTCCACAACCGGAAGCTCCAGCAGCAGAAGCAG
CCCCACAACCAAAAGCTCCAGCCGCAGAAGCAGCCCTTCAAGCAGAGGCT
CCAGTTACAGAAGCAGTCCCTCAACCAGAAGCTCCAGTCGCAGAAGCAGC
CCCTCAACCAGAAGCCCCAGTCACAGAAGCAGTCCCGCAACCAGAGGCTC
CAGTCGCAGAAGCAGTCCCTCAACCAGAAGCTCCAGTCGCAGAAGCAGTC
CCTCAACCAGAAGCTCCAGTCGCAGAAGCAGTCCCACAACCAGAAGCTCT
AGCTCCACAAGCAGGGGCTCCTGTCGCTGAAGCAGCCCCACAACCAGAAG
CTCCTGTCGCTGAAGCAGCCCCACAACCAGAGGCTGCCATCGCAGAAGCA
GTTCCACAAGCAGATGCTCCAGTTGTTGAAGCAGCCCCACAACCAGAGGC
TCCAGTCGCAGAAGCAGCCCCACAACCAGAGGCTCCAGTCGCAGAAGCAG
CCCCACAATCAGAAGCTCCTGTCGCTGAAGCAGCCCCTCAACCAGAGGCT
CCCATCGCAGAAGCAGTTCCACAAGCAGAGGCTCCAGTTGTTGAAGCAGC
CCCACAACCAGAGGCTCCAGTCGCAGAAACAGCCCCACAATCAGAAGCTC
CAGCCGCAGAAGCAGCCCTGGAAGCAGAAGCTCCAGTTGCAGAAGCAGTC
CCTCAACCAGAAGCTCAAGTCCCACAAGCAGAAGCTCTTGTTGCTGAAGC
AGCCCCACAGCCAGAGGCTCCCATTGCAGAAGCAGGTCCACAAGCACAGG
CTCCAGTTGTTGAAGCAGCCCCACAACCAGAGGCTCCAGTCGCAGAAGCA
GCCCAACAACCAGAGGCTCCAGTTGCAGAAGGAGTCCCTCAACTAGAAGT
ACCAGTTGCAGAAGCAGCCCCACAACCAGAGGCTCCAGTTGCAGAAGGAG
TCTCTCAACCAGAAGCTCCAGTTGCAGAAGCAGCCCCACAACCAGAGGCT
CCAGTTCCAGAAGTTCCAGTCGCAGAAGCAGCCCCACAACCGGAGGCTCC
TGCTGCAGAAGTAGCCCCACAACCAGAATCTCCAGTCCCACAATCAGAGG
CTCCTGTCGCTGAAGCCATCCCACAAGCAGAGGCCCCAGCCGCAGAAGCA
GCCCCACAACCAGAAACTCCTGCTCAACAGCCAGAAGCTCCAGCCGTAGA
AGCAGCCCCCCAACCGGAAGCTCCAGCTGCAGAAGTATCCCAACCTTCAG
AGCCAGTCGCATGACTTTGTGTGTGTTTATAGTATGATGTATGAGTATGA
TTAAATGAATACCCCTTAGTGCCTTAGCCGTTTTTCCATATAACCTTAAA
CCGTATTTGTTTTCTTAATGACTTTTAAACTTCTTTTGAATGAATATATT
GATGTATGAGGTACGGGGGTATCATTTGATTCCTTGTATATTCTTTGGAA
NTCCAGCCGTAGAAGCAGCCCCTCAACCGGAAGCTCCAGCTGCAGAAGTA
TCCCAACCTTCAGAGCCAGTCGCATGACTTTGTGTGTGTTTATAGTATGA
TGTATGAGTATGATTAAATGAATACCCCTTAGTGCCTTAGCCGTTTTTCC
ATATAACCTTAAACCGTATTTGTTTTCTTAATGACTTTTAAACTTCTTTT
GAATGAATATATTGATGTATGAGGTACGGGGGTATCATTTGATTGCTTGT
ATATTCTTTGGAAGGCTGCTTGGATATCGGTGGAAAAGAGAAAATTCAAA
AACGCTCCTCATCAATACTTTTGAATTCACCGCATCGACCTAAGGTTCCT
CCTTGATGCTGGCAAGGATTACTAAGCAACATTGGTTATTGTGAATTCAG
TTCCAATACAAATAACGTTGACAGCTCATAGAGTTGAAGAATATAATTTC
TTGATAAATGGAGAATCTGTGAGAAATCATACAATAAGAAGCCATCCAAA
GACGATAAAGTGAGCAACAGTTACACTTTATTGGGAAAAATAGTCGAATC
GATAATGAATGACATTTATAAGGGATTTATTTTTGAATCAGTTACCTGAC
TGAGAAAAACCTTGGATCTTTTTCCTGAAGAGGTATTGTTTATTTGAATA
ACAAGTTTTTCGGCTTTGGTCATGGTAAAAAAGTAGTTTTTCTATTTCGC
ACATTCTTTGTAATTATTGTTAAATAGATTATTTATTTAAGAATATCAAT
TGTGACTTTTCTCTGTCATAAAAATATTTAATGCCTAATTTTCATCAAAT
CAAAAAAGTGAAGAAACAGTTAAAGTCCAATGCTGTTTTCCATCTTTTTG
GCATTCCAAATAGATTGATTGATCTGTTGAACTGGCATTTTGGTACACGT
AACGTAAGAAAATTTTGAAAACTTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000751XLOC_000751Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001470-exon-sc0000010-1575043694:412571..412917TCONS_00001470-exon-sc0000010-1575043694:412571..412917Clytia hemisphaericaexon
TCONS_00001470-exon-sc0000010-1575043694:411786..412336TCONS_00001470-exon-sc0000010-1575043694:411786..412336Clytia hemisphaericaexon
TCONS_00001470-exon-sc0000010-1575043694:411069..411620TCONS_00001470-exon-sc0000010-1575043694:411069..411620Clytia hemisphaericaexon
TCONS_00001470-exon-sc0000010-1575043694:409793..411035TCONS_00001470-exon-sc0000010-1575043694:409793..411035Clytia hemisphaericaexon
TCONS_00001470-exon-sc0000010-1510915933:412571..412917TCONS_00001470-exon-sc0000010-1510915933:412571..412917Clytia hemisphaericaexon
TCONS_00001470-exon-sc0000010-1510915933:411786..412336TCONS_00001470-exon-sc0000010-1510915933:411786..412336Clytia hemisphaericaexon
TCONS_00001470-exon-sc0000010-1510915933:411069..411620TCONS_00001470-exon-sc0000010-1510915933:411069..411620Clytia hemisphaericaexon
TCONS_00001470-exon-sc0000010-1510915933:409793..411035TCONS_00001470-exon-sc0000010-1510915933:409793..411035Clytia hemisphaericaexon
TCONS_00001470-exon-sc0000010-1491911889:412571..412917TCONS_00001470-exon-sc0000010-1491911889:412571..412917Clytia hemisphaericaexon
TCONS_00001470-exon-sc0000010-1491911889:411786..412336TCONS_00001470-exon-sc0000010-1491911889:411786..412336Clytia hemisphaericaexon
TCONS_00001470-exon-sc0000010-1491911889:411069..411620TCONS_00001470-exon-sc0000010-1491911889:411069..411620Clytia hemisphaericaexon
TCONS_00001470-exon-sc0000010-1491911889:409793..411035TCONS_00001470-exon-sc0000010-1491911889:409793..411035Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000010supercontigsc0000010:409793..412917 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0.0902783	0.0436302	0.116067	0	0.0930343	0.0379954	0	0	0	50.7693	68.3058	0	0.0574228	33.8301	39.7953	0	0	0	0.146153	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00001470 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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