TCONS_00001468 (transcript) - C. hemisphaerica

Overview
NameTCONS_00001468
Unique NameTCONS_00001468
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2133

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00001468 ID=TCONS_00001468|Name=TCONS_00001468|organism=Clytia hemisphaerica|type=transcript|length=2133bp
ATTTATGCCATCAACCTTCCCCTTTTGATTTGAGCTTTGACGACACAAGT
gcttctttgatatttttttgagaattttctttCTAGAAGAATTAAATTTT
CGATTTAAAGATGACTTCAGAATCCAACGAACAAACTACTCAAGAAGTAT
CAACTTCTGCTTCAGAGACACCAAAGCAGGAGACTCCCGAAGTTGAAGTA
GCTCCAGCCGCACAGGCAGCGCCGCAACCAGAAGTCCCAGCCGCAGAAGT
AGCCCTACAACAAGAAGCTCCAGTCCCACAAGCAGAGGCTTCTGTCGCTG
AAGCAGCTCCACAACCGGAAGCTCCAGCAGCAGAAGCAGCCCCACAACCA
AAAGCTCCAGCCGCAGAAGCAGCCCTTCAAGCAGAGGCTCCAGTTACAGA
AGCAGTCCCTCAACCAGAAGCTCCAGTCGCAGAAGCAGCCCCTCAACCAG
AAGCCCCAGTCACAGAAGCAGTCCCGCAACCAGAGGCTCCAGTCGCAGAA
GCAGTCCCTCAACCAGAAGCTCCAGTCGCAGAAGCAGTCCCTCAACCAGA
AGCTCCAGTTGTTGAAGCAGCCCCACAACCAGAGGCTCCAGTCGCAGAAA
CAGCCCCACAATCAGAAGCTCCAGCCGCAGAAGCAGCCCTGGAAGCAGAA
GCTCCAGTTGCAGAAGCAGTCCCTCAACCAGAAGCTCAAGTCCCACAAGC
AGAAGCTCTTGTTGCTGAAGCAGCCCCACAGCCAGAGGCTCCCATTGCAG
AAGCAGGTCCACAAGCACAGGCTCCAGTTGTTGAAGCAGCCCCACAACCA
GAGGCTCCTGCTGCAGAAGTAGCCCCACAACCAGAATCTCCAGTCCCACA
ATCAGAGGCTCCTGTCGCTGAAGCCATCCCACAAGCAGAGGCCCCAGCCG
CAGAAGCAGCCCCACAACCAGAAACTCCTGCTCAACAGCCAGAAGCTCCA
GCCGTAGAAGCAGCCCCCCAACCGGAAGCTCCAGCTGCAGAAGTATCCCA
ACCTTCAGAGCCAGTCGCATGACTTTGTGTGTGTTTATAGTATGATGTAT
GAGTATGATTAAATGAATACCCCTTAGTGCCTTAGCCGTTTTTCCATATA
ACCTTAAACCGTATTTGTTTTCTTAATGACTTTTAAACTTCTTTTGAATG
AATATATTGATGTATGAGGTACGGGGGTATCATTTGATTCCTTGTATATT
CTTTGGAANTCCAGCCGTAGAAGCAGCCCCTCAACCGGAAGCTCCAGCTG
CAGAAGTATCCCAACCTTCAGAGCCAGTCGCATGACTTTGTGTGTGTTTA
TAGTATGATGTATGAGTATGATTAAATGAATACCCCTTAGTGCCTTAGCC
GTTTTTCCATATAACCTTAAACCGTATTTGTTTTCTTAATGACTTTTAAA
CTTCTTTTGAATGAATATATTGATGTATGAGGTACGGGGGTATCATTTGA
TTGCTTGTATATTCTTTGGAAGGCTGCTTGGATATCGGTGGAaaagagaa
aattcaaaaacgCTCCTCATCAATACTTTTGAATTCACCGCATCGACCTA
AGGTTCCTCCTTGATGCTGGCAAGGATTACTAAGCAACATTGGTTATTGT
GAATTCAGTTCCAATACAAATAACGTTGACAGCTCATAGAGTTGAAGAAT
ATAATTTCTTGATAAATGGAGAATCTGTGAGAAATCATACAATAAGAAGC
CATCCAAAGACGATAAAGTGAGCAACAGTTACACTTTATTGGGAAAAATA
GTCGAATCGATAATGAATGACATTTATAAGGGATTTATTTTTGAATCAGT
TACCTGACTGAGAAAAACCTTGGATCTTTTTCCTGAAGAGGTATTGTTTA
TTTGAATAACAAGTTTTTCGGCTTTGGTCATGGTAAAAAAGTAGTTTTTC
TATTTCGCACATTCTTTGTAATTATTGTTAAATAGATTATTTATTTAAGA
ATATCAATTGTGACTTTTCTCtgtcataaaaatatttaatgcctaatttt
catcaaatcaaaaaagtgaagaaacaGTTAAAGTCCAATGCTGTTTTCCA
TCTTTTTGGCATTCCAAATAGATTGATTGATCTGTTGAACTGGCATTTTG
GTACACGTAAcgtaagaaaattttgaaaacttc
Run BLAST on NCBI

transcript from alignment at sc0000010:409793..412690-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00001468 ID=TCONS_00001468|Name=TCONS_00001468|organism=Clytia hemisphaerica|type=transcript|length=2898bp|location=Sequence derived from alignment at sc0000010:409793..412690- (Clytia hemisphaerica)
ATTTATGCCATCAACCTTCCCCTTTTGATTTGAGCTTTGACGACACAAGT
GCTTCTTTGATATTTTTTTGAGAATTTTCTTTCTAGAAGAATTAAATTTT
CGATTTAAAGATGACTTCAGGTAAGTTTGGAGAATAATATTACCTTGAGA
TTAAAAAAACAACACCTATTTTATTGAATAAGAAAGAAACAGGTTGCAGA
ATATAGAATTAAAAAGTAAAATCAACTATCTGTTTTTTAATCTGTTTTAG
TATGCATGACCATTGAAAAACATCAATCCTTCTAGGGTGAAAAAATTAGG
AGTAATATGGTATCTTGTAAAAGACGTCATTTTTTTAATGTCTCTCTTTT
TTAGAATCCAACGAACAAACTACTCAAGAAGTATCAACTTCTGCTTCAGA
GACACCAAAGCAGGAGACTCCCGAAGTTGAAGTAGCTCCAGCCGCACAGG
CAGCGCCGCAACCAGAAGTCCCAGCCGCAGAAGTAGCCCTACAACAAGAA
GCTCCAGTCCCACAAGCAGAGGCTTCTGTCGCTGAAGCAGCTCCACAACC
GGAAGCTCCAGCAGCAGAAGCAGCCCCACAACCAAAAGCTCCAGCCGCAG
AAGCAGCCCTTCAAGCAGAGGCTCCAGTTACAGAAGCAGTCCCTCAACCA
GAAGCTCCAGTCGCAGAAGCAGCCCCTCAACCAGAAGCCCCAGTCACAGA
AGCAGTCCCGCAACCAGAGGCTCCAGTCGCAGAAGCAGTCCCTCAACCAG
AAGCTCCAGTCGCAGAAGCAGTCCCTCAACCAGAAGCTCCAGTCGCAGAA
GCAGTCCCACAACCAGAAGCTCTAGCTCCACAAGCAGGGGCTCCTGTCGC
TGAAGCAGCCCCACAACCAGAAGCTCCTGTCGCTGAAGCAGCCCCACAAC
CAGAGGCTGCCATCGCAGAAGCAGTTCCACAAGCAGATGCTCCAGTTGTT
GAAGCAGCCCCACAACCAGAGGCTCCAGTCGCAGAAGCAGCCCCACAACC
AGAGGCTCCAGTCGCAGAAGCAGCCCCACAATCAGAAGCTCCTGTCGCTG
AAGCAGCCCCTCAACCAGAGGCTCCCATCGCAGAAGCAGTTCCACAAGCA
GAGGCTCCAGTTGTTGAAGCAGCCCCACAACCAGAGGCTCCAGTCGCAGA
AACAGCCCCACAATCAGAAGCTCCAGCCGCAGAAGCAGCCCTGGAAGCAG
AAGCTCCAGTTGCAGAAGCAGTCCCTCAACCAGAAGCTCAAGTCCCACAA
GCAGAAGCTCTTGTTGCTGAAGCAGCCCCACAGCCAGAGGCTCCCATTGC
AGAAGCAGGTCCACAAGCACAGGCTCCAGTTGTTGAAGCAGCCCCACAAC
CAGAGGCTCCAGTCGCAGAAGCAGCCCAACAACCAGAGGCTCCAGTTGCA
GAAGGAGTCCCTCAACTAGAAGTACCAGTTGCAGAAGCAGCCCCACAACC
AGAGGCTCCAGTTGCAGAAGGAGTCTCTCAACCAGAAGCTCCAGTTGCAG
AAGCAGCCCCACAACCAGAGGCTCCAGTTCCAGAAGTTCCAGTCGCAGAA
GCAGCCCCACAACCGGAGGCTCCTGCTGCAGAAGTAGCCCCACAACCAGA
ATCTCCAGTCCCACAATCAGAGGCTCCTGTCGCTGAAGCCATCCCACAAG
CAGAGGCCCCAGCCGCAGAAGCAGCCCCACAACCAGAAACTCCTGCTCAA
CAGCCAGAAGCTCCAGCCGTAGAAGCAGCCCCCCAACCGGAAGCTCCAGC
TGCAGAAGTATCCCAACCTTCAGAGCCAGTCGCATGACTTTGTGTGTGTT
TATAGTATGATGTATGAGTATGATTAAATGAATACCCCTTAGTGCCTTAG
CCGTTTTTCCATATAACCTTAAACCGTATTTGTTTTCTTAATGACTTTTA
AACTTCTTTTGAATGAATATATTGATGTATGAGGTACGGGGGTATCATTT
GATTCCTTGTATATTCTTTGGAANTCCAGCCGTAGAAGCAGCCCCTCAAC
CGGAAGCTCCAGCTGCAGAAGTATCCCAACCTTCAGAGCCAGTCGCATGA
CTTTGTGTGTGTTTATAGTATGATGTATGAGTATGATTAAATGAATACCC
CTTAGTGCCTTAGCCGTTTTTCCATATAACCTTAAACCGTATTTGTTTTC
TTAATGACTTTTAAACTTCTTTTGAATGAATATATTGATGTATGAGGTAC
GGGGGTATCATTTGATTGCTTGTATATTCTTTGGAAGGCTGCTTGGATAT
CGGTGGAAAAGAGAAAATTCAAAAACGCTCCTCATCAATACTTTTGAATT
CACCGCATCGACCTAAGGTTCCTCCTTGATGCTGGCAAGGATTACTAAGC
AACATTGGTTATTGTGAATTCAGTTCCAATACAAATAACGTTGACAGCTC
ATAGAGTTGAAGAATATAATTTCTTGATAAATGGAGAATCTGTGAGAAAT
CATACAATAAGAAGCCATCCAAAGACGATAAAGTGAGCAACAGTTACACT
TTATTGGGAAAAATAGTCGAATCGATAATGAATGACATTTATAAGGGATT
TATTTTTGAATCAGTTACCTGACTGAGAAAAACCTTGGATCTTTTTCCTG
AAGAGGTATTGTTTATTTGAATAACAAGTTTTTCGGCTTTGGTCATGGTA
AAAAAGTAGTTTTTCTATTTCGCACATTCTTTGTAATTATTGTTAAATAG
ATTATTTATTTAAGAATATCAATTGTGACTTTTCTCTGTCATAAAAATAT
TTAATGCCTAATTTTCATCAAATCAAAAAAGTGAAGAAACAGTTAAAGTC
CAATGCTGTTTTCCATCTTTTTGGCATTCCAAATAGATTGATTGATCTGT
TGAACTGGCATTTTGGTACACGTAACGTAAGAAAATTTTGAAAACTTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000751XLOC_000751Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001468-exon-sc0000010-1575043694:412571..412690TCONS_00001468-exon-sc0000010-1575043694:412571..412690Clytia hemisphaericaexon
TCONS_00001468-exon-sc0000010-1575043694:411906..412336TCONS_00001468-exon-sc0000010-1575043694:411906..412336Clytia hemisphaericaexon
TCONS_00001468-exon-sc0000010-1575043694:411336..411587TCONS_00001468-exon-sc0000010-1575043694:411336..411587Clytia hemisphaericaexon
TCONS_00001468-exon-sc0000010-1575043694:409793..411122TCONS_00001468-exon-sc0000010-1575043694:409793..411122Clytia hemisphaericaexon
TCONS_00001468-exon-sc0000010-1510915933:412571..412690TCONS_00001468-exon-sc0000010-1510915933:412571..412690Clytia hemisphaericaexon
TCONS_00001468-exon-sc0000010-1510915933:411906..412336TCONS_00001468-exon-sc0000010-1510915933:411906..412336Clytia hemisphaericaexon
TCONS_00001468-exon-sc0000010-1510915933:411336..411587TCONS_00001468-exon-sc0000010-1510915933:411336..411587Clytia hemisphaericaexon
TCONS_00001468-exon-sc0000010-1510915933:409793..411122TCONS_00001468-exon-sc0000010-1510915933:409793..411122Clytia hemisphaericaexon
TCONS_00001468-exon-sc0000010-1491911889:412571..412690TCONS_00001468-exon-sc0000010-1491911889:412571..412690Clytia hemisphaericaexon
TCONS_00001468-exon-sc0000010-1491911889:411906..412336TCONS_00001468-exon-sc0000010-1491911889:411906..412336Clytia hemisphaericaexon
TCONS_00001468-exon-sc0000010-1491911889:411336..411587TCONS_00001468-exon-sc0000010-1491911889:411336..411587Clytia hemisphaericaexon
TCONS_00001468-exon-sc0000010-1491911889:409793..411122TCONS_00001468-exon-sc0000010-1491911889:409793..411122Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000010supercontigsc0000010:409793..412690 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.035963	0	0.0408522	0	0.0982504	0	0	0.0528671	0	0	0.123883	0	0	0	0	15.633	22.7382	0.0196017	0	13.3603	14.6235	0	0	0.267421	0.00262674	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00001468 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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