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TCONS_00001407 (transcript) - C. hemisphaerica

Overview
NameTCONS_00001407
Unique NameTCONS_00001407
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1537

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00001407 ID=TCONS_00001407|Name=TCONS_00001407|organism=Clytia hemisphaerica|type=transcript|length=1537bp
AAATTATTGACGACTAATCGTTCACAAAAGGACTTTTTCATTCGAGaata
agtttaatattttcaaaaagttataatcATCATGAAAATATGTCGTTTTG
AGAGAGAAGATGAATGTTGAACGTTAAAGAGCATCAGCTAAACTGACCAC
AATTGAAGTTGGAaaaaatactgcaggaaaaacTCTTCTTGAAATAACAA
TGAATAGAAttcttttcttcttgttttttNCACTGACCACGACTTAAACA
AGCTCGAGAATGGAGTAtaacaaaatttatttcatcCTTTTGGTGGTTTC
AGCTACTATAAAAGATTCTCTATTAATCAAATGTTATGACTGTTCTGGAA
CTCACGCGTATTGTAACAACACAAGAAAAACAAAGACTTGTGATGGACCA
CAGTATTCCTGTCTCCTACGATCTGGAAGCACCAAGATTCGAGTTTTAAA
GAACGGTGCTTtagattttgaagtttttagcACTGTAACAAAAACTTGTG
CCGTGGAGAGCAGTTCATATTGTGTGACTCAAAAAGAAATCGACCCTAAA
ATGCTGACCTGTAAGGCTGTGTGGTGTTACGAAGATGGATGTAATTTCAA
CATGAAACAAGCTAACAGAGCTGGCCAAACGAGTCAAGCAAATGAAATTG
ACCCATATGGGTGGTATAAGACCTGGACTTCTTCAGCGACAAATGCAACT
GGCTTAAAACTTGATTTAACATTTTATCTGTGTTTGATTTCTGGgttatt
gatttttcttgagtGAAATGAAAACGACATGGATATCCCAGCCAAAATTT
CGAGTCTAGATACCAGACGACGAATGATCATTTTGGAGCATCTTGTCAAA
GTTGGTTCCAAAAAAATTGGCAGTCTGCACATTTTGATACATTTCTGCTT
GAagggaaaaaaatataaagtaatacctcgttggaaagatattcttaACC
GGACTATTTTAAGtcttcaaaatcttttaaaaatttagaaaatggaaatg
aaaaatgaagatgaaaaaattaaagattttttctactggCACAAGAATTT
TTCCGAAACttgaactttttcattttcgaaattttgaaagccttaaaacc
aTCCACTTACGAATATCTTatcaacgaggtattacttgtAGTTATATCTT
TTCTCCTTCTGCAGAAATGTATCAAAATGTGTAGACTGcaaatttttttg
gaacagacttaaaacagaagcagccaccgacctaaaatttgcaaatatct
gctctgatttgccagctggaaaaatttccccgaaattaagaacagttcct
cgttttccaggggagaaatttttacttcagaacagttatatttttccagc
taggaggtaagAAAACTTTCGGAACaggtacgaaattaccaggcgattga
ttttacgcgagttaactattcttatctaccagggctgacgaaatcttata
agaacagatcgctaaattccagctcgacattgaaggacttttaagaacag
aaaattaatttccagctaacagtttaaCTTTAAGTAT
Run BLAST on NCBI

protein sequence of TCONS_00001407-protein

>TCONS_00001407-protein ID=TCONS_00001407-protein|Name=TCONS_00001407-protein|organism=Clytia hemisphaerica|type=polypeptide|length=168bp
MEYNKIYFILLVVSATIKDSLLIKCYDCSGTHAYCNNTRKTKTCDGPQYS
CLLRSGSTKIRVLKNGALDFEVFSTVTKTCAVESSSYCVTQKEIDPKMLT
CKAVWCYEDGCNFNMKQANRAGQTSQANEIDPYGWYKTWTSSATNATGLK
LDLTFYLCLISGLLIFLE
Run BLAST on NCBI

transcript from alignment at sc0000010:1144631..1148270+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00001407 ID=TCONS_00001407|Name=TCONS_00001407|organism=Clytia hemisphaerica|type=transcript|length=3640bp|location=Sequence derived from alignment at sc0000010:1144631..1148270+ (Clytia hemisphaerica)
AAATTATTGACGACTAATCGTTCACAAAAGGACTTTTTCATTCGAGaata agtttaatattttcaaaaagttataatcATCATGAAAATATGTCGTTTTG AGAGAGAAGATGAATGTTGAACGTTAAAGAGCATCAGCTAAACTGACCAC AATTGAAGTTGGAaaaaatactgcaggaaaaacTCTTCTTGAAATAACAA TGAATAGAAttcttttcttcttgttttttNCACTGACCACGACTTAAACA AGCTCGAGAATGGAGTAtaacaaaatttatttcatcCTTTTGGTGGTTTC AGCTACTATAAAAGGTTTGTGAATACTTTCAAACGCAGTAGTTACGTTTT GAATAGGATAAGAAATTAGATTTGTTTATCCTCTAGGGAAAACGTTTTTA TCCCGGAGGGGGAGGGCGAGATgatgggtatgtccgagccaaagttaCTG GTGATGGAGTTTTGGACCCTTACAGCGACTCAATTTGCtctttaatggtt tttgtacccctttttgagcgtgtgaaaaagggacccttatggctcatATT TgaggatttgaaatttttttatatttagtaTTATGGTTAATTCTGTATTC ATGAAATATAGCCTCACCATTTCGGTTCCTATAGGTATCTTAACATTGTG TAAAAATTGGTTCAGTGGACTAAGAGAGCTCTTATAATTTCATATGTCAG CATAGTCTAGTCTTTTCAAAAAGAGCTGAAAATACAGTGCTTTTAGCGAC CAAAGtggtgaaaattaaaatttttcccctatcggcgcaaaccatggttg cgcctccttaatCTCTGATAACACTTTAAATGCAACTCAAATTACTATTA CGATATCGAGATATTGTATATgcaaagaaaaacttcaattttaaaattca atatGATTCAGGCAGAATCATTCCGAAAAAGAGCCATGCTTGAAGGAAAT CAGTGgtccaaaatcaattttctcctgtcggcgcaaaccatggttgcgcc tccttcgTCACTAAATTATTTTCCCCTGCACGTTTGAAATCAAGCTACTT GTTGCCTTTTATATAATAATGTAGTCCTCCCCACATGAGTGCACAACATT TTGATATTGAGGCTTATAGGATCACTCACAATATAGAAAGTTACTGTAGT TAAACCCGATTTCTATATGTGACAAGTCACCATTCAAGTATAAGTAAGTA TAACCCTCACCTTAATCAATCAATTAGAGtgtagggaaaaaattttagca aggggggggggggNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNCTGACCACTCCCTGAGATCCTAAGAACTGGCTCTCTTATA AAAGTGAATTCctcttttttttcaacatttgaagtttttcgaatttttta tttcGGGATGAAAATTTTCTAGCAGGCTTCAAACTATACACATCTACATT TTAGATTCTCTATTAATCAAATGTTATGACTGTTCTGGAACTCACGCGTA TTGTAACAACACAAGAAAAACAAAGACTTGTGATGGACCACAGTATTCCT GTCTCCTACGATCTGGAAGCACCAAGATTCGAGTTTTAAAGAACGGTGCT TtagattttgaagtttttagcACTGTAACAAAAACTTGTGCCGTGGAGAG CAGTTCATATTGTGTGACTCAAAAAGAAATCGACCCTAAAATGCTGACCT GTAAGGTATTGCAACAGCTAATTTAGACTCGCAGCCAAGCTGCTCACGTC ATTGTGAATTAACACCCCTGTGTTACAGACCACTTTAAACTTTGAGCGAT CAAAATTTGTCCCTAGTAGGAAAAATATCCTataatttcagcaaaaaatt gaccttgccccattcgaaattcaatgtaaaaaaattgcacttcaaaacca tcccaactggatttttttgattgcttggaacgatagaatttctatcccca ttgggctTTCGATAGAAATATTTATTTCCGTTTCCGCTGTGTAAGAAGAA TTTCATCGAGCCTGTGAGACAGGAGGTGTAAATTAACTTACGCCTTAAAA TCTGAGACTGCTCAAATATCATCACGCCTCGTTGACAAAGGGGGTGttag atttttcattttcactcaTTACATCATGCATAGCCCTATCGATAATGGCC CGTACTAATAGTTGTTGACCCTATGCTGCATCATACATATTGTATGATGG CACTGATTTCAAAAGCGTGAACCGAAAGAGTATCGATGTCAGGGTTTCTT TTTACACTTATGTTATAGGCTGTGTGGTGTTACGAAGATGGATGTAATTT CAACATGAAACAAGCTAACAGAGCTGGCCAAACGAGTCAAGCAAATGAAA TTGACCCATATGGGTGGTATAAGACCTGGACTTCTTCAGCGACAAATGCA ACTGGCTTAAAACTTGATTTAACATTTTATCTGTGTTTGATTTCTGGgtt attgatttttcttgagtGAAATGAAAACGACATGGATATCCCAGCCAAAA TTTCGAGTCTAGATACCAGACGACGAATGATCATTTTGGAGCATCTTGTC AAAGTTGGTTCCAAAAAAATTGGCAGTCTGCACATTTTGATACATTTCTG CTTGAagggaaaaaaatataaagtaatacctcgttggaaagatattctta ACCGGACTATTTTAAGtcttcaaaatcttttaaaaatttagaaaatggaa atgaaaaatgaagatgaaaaaattaaagattttttctactggCACAAGAA TTTTTCCGAAACttgaactttttcattttcgaaattttgaaagccttaaa accaTCCACTTACGAATATCTTatcaacgaggtattacttgtAGTTATAT CTTTTCTCCTTCTGCAGAAATGTATCAAAATGTGTAGACTGcaaattttt ttggaacagacttaaaacagaagcagccaccgacctaaaatttgcaaata tctgctctgatttgccagctggaaaaatttccccgaaattaagaacagtt cctcgttttccaggggagaaatttttacttcagaacagttatatttttcc agctaggaggtaagAAAACTTTCGGAACaggtacgaaattaccaggcgat tgattttacgcgagttaactattcttatctaccagggctgacgaaatctt ataagaacagatcgctaaattccagctcgacattgaaggacttttaagaa cagaaaattaatttccagctaacagtttaaCTTTAAGTAT

Coding sequence (CDS) from alignment at sc0000010:1144631..1148270+

>TCONS_00001407 ID=TCONS_00001407|Name=TCONS_00001407|organism=Clytia hemisphaerica|type=CDS|length=1521bp|location=Sequence derived from alignment at sc0000010:1144631..1148270+ (Clytia hemisphaerica)
ATGGAGTAtaacaaaatttatttcatcCTTTTGGTGGTTTCAGCTACTAT
AAAAGATTCTCTATTAATCAAATGTTATGACTGTTCTGGAACTCACGCGT
ATTGTAACAACACAAGAAAAACAAAGACTTGTGATGGACCACAGTATTCC
TGTCTCCTACGATCTGGAAGCACCAAGATTCGAGTTTTAAAGAACGGTGC
TTtagattttgaagtttttagcACTGTAACAAAAACTTGTGCCGTGGAGA
GCAGTTCATATTGTGTGACTCAAAAAGAAATCGACCCTAAAATGCTGACC
TGTAAGGCTGTGTGGTGTTACGAAGATGGATGTAATTTCAACATGAAACA
AGCTAACAGAGCTGGCCAAACGAGTCAAGCAAATGAAATTGACCCATATG
GGTGGTATAAGACCTGGACTTCTTCAGCGACAAATGCAACTGGCTTAAAA
CTTGATTTAACATTTTATCTGTGTTTGATTTCTGGgttattgatttttct
tgagtGAATGGAGTAtaacaaaatttatttcatcCTTTTGGTGGTTTCAG
CTACTATAAAAGATTCTCTATTAATCAAATGTTATGACTGTTCTGGAACT
CACGCGTATTGTAACAACACAAGAAAAACAAAGACTTGTGATGGACCACA
GTATTCCTGTCTCCTACGATCTGGAAGCACCAAGATTCGAGTTTTAAAGA
ACGGTGCTTtagattttgaagtttttagcACTGTAACAAAAACTTGTGCC
GTGGAGAGCAGTTCATATTGTGTGACTCAAAAAGAAATCGACCCTAAAAT
GCTGACCTGTAAGGCTGTGTGGTGTTACGAAGATGGATGTAATTTCAACA
TGAAACAAGCTAACAGAGCTGGCCAAACGAGTCAAGCAAATGAAATTGAC
CCATATGGGTGGTATAAGACCTGGACTTCTTCAGCGACAAATGCAACTGG
CTTAAAACTTGATTTAACATTTTATCTGTGTTTGATTTCTGGgttattga
tttttcttgagtGAATGGAGTAtaacaaaatttatttcatcCTTTTGGTG
GTTTCAGCTACTATAAAAGATTCTCTATTAATCAAATGTTATGACTGTTC
TGGAACTCACGCGTATTGTAACAACACAAGAAAAACAAAGACTTGTGATG
GACCACAGTATTCCTGTCTCCTACGATCTGGAAGCACCAAGATTCGAGTT
TTAAAGAACGGTGCTTtagattttgaagtttttagcACTGTAACAAAAAC
TTGTGCCGTGGAGAGCAGTTCATATTGTGTGACTCAAAAAGAAATCGACC
CTAAAATGCTGACCTGTAAGGCTGTGTGGTGTTACGAAGATGGATGTAAT
TTCAACATGAAACAAGCTAACAGAGCTGGCCAAACGAGTCAAGCAAATGA
AATTGACCCATATGGGTGGTATAAGACCTGGACTTCTTCAGCGACAAATG
CAACTGGCTTAAAACTTGATTTAACATTTTATCTGTGTTTGATTTCTGGg
ttattgatttttcttgagtGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000745XLOC_000745Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001407-proteinTCONS_00001407-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001407-exon-sc0000010-1491911889:1144631..1144944TCONS_00001407-exon-sc0000010-1491911889:1144631..1144944Clytia hemisphaericaexon
TCONS_00001407-exon-sc0000010-1510915933:1144631..1144944TCONS_00001407-exon-sc0000010-1510915933:1144631..1144944Clytia hemisphaericaexon
TCONS_00001407-exon-sc0000010-1575043694:1144631..1144944TCONS_00001407-exon-sc0000010-1575043694:1144631..1144944Clytia hemisphaericaexon
TCONS_00001407-exon-sc0000010-1491911889:1146485..1146735TCONS_00001407-exon-sc0000010-1491911889:1146485..1146735Clytia hemisphaericaexon
TCONS_00001407-exon-sc0000010-1510915933:1146485..1146735TCONS_00001407-exon-sc0000010-1510915933:1146485..1146735Clytia hemisphaericaexon
TCONS_00001407-exon-sc0000010-1575043694:1146485..1146735TCONS_00001407-exon-sc0000010-1575043694:1146485..1146735Clytia hemisphaericaexon
TCONS_00001407-exon-sc0000010-1491911889:1147299..1148270TCONS_00001407-exon-sc0000010-1491911889:1147299..1148270Clytia hemisphaericaexon
TCONS_00001407-exon-sc0000010-1510915933:1147299..1148270TCONS_00001407-exon-sc0000010-1510915933:1147299..1148270Clytia hemisphaericaexon
TCONS_00001407-exon-sc0000010-1575043694:1147299..1148270TCONS_00001407-exon-sc0000010-1575043694:1147299..1148270Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000010supercontigsc0000010:1144631..1148270 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.675799 0.701132 0.744103 0.705986 0.901742 0 1.70547 0.547457 2.12347 1.91302 1.70637 2.08445 1.17552 0.490653 0.101195 0.277129 1.29157 1.84624 1.32266 1.44145 2.24388 2.56772 1.65764 1.71122 1.46456 2.36882 0 0 0 0.434236
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00001407 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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