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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00001398 ID=TCONS_00001398|Name=TCONS_00001398|organism=Clytia hemisphaerica|type=transcript|length=605bp
CCGAGATGAAGATCATTTCTGTTTACCGATTGCAGGTGGTTTCACTCTTC
TTTACGTCATAACAGAGGGTCCGACAGTCCATGAAGCTTACCAAAAATGC
GATCAAACCGGTGGACGTTTAAGCCCTCTACCTTTAACTGATGACCAAAG
AACACTATACAACGGTCTAATGCAAAACAATGGATTGTCCCAAGCTGTTG
GTTTTAACGCACAAACAAAATATGCTACATTTACAAAATTGGTCAAGAAG
GTTACACTATGGAGAAATGctcagaagaaatttctaagcATTATCTATGT
GTTTATGTCTTACTCGGCACAATACAACCTGTTCCTCTTATATCTAACTT
TTTTGGTCCCAATAACGAATATGAGATTAAGACTCGACTAAATGAATTTT
ACACCGATACATTTCTATCCGCAAAGAAAACATGTGAAACGAAAGGCAAA
GAGCTTCTATCTATTGAAAGTTTGGATAAATTGGAAAGTTTCAACGCAGC
TGCTACTGAAGCAGGTTATAAGTAAGATTTTTCTTTACATCAAATTCTAC
TTCCTTGATTATTATATGGGTGTTTCCACACTTCTCAAAAGTTTCTATAT
ACCGC Run BLAST on NCBI transcript from alignment at sc0000010:1041340..1044500+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00001398 ID=TCONS_00001398|Name=TCONS_00001398|organism=Clytia hemisphaerica|type=transcript|length=3161bp|location=Sequence derived from alignment at sc0000010:1041340..1044500+ (Clytia hemisphaerica)
CCGAGATGAAGATCATTTCTGTTTACCGATTGCAGGTACGAGCTCTTTTA
TGAAATAAGATCAATTAAGCAACATAAAGAcagcattttcaattaaaaat
tttcagttggattaacgatgtaaaaataatagataaccaacttgccttga
ttctcaaaaaacatccgtgttacggttgtaaaaatattaatgacattttg
catcgtaaaaagtgcaattNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNatcattttatgagcgtttatttatccagatgaagattaagtgg
tatcaggccgatccgtagtcaatttgtctaaagattagtacctttatctt
ttgaaaaaaatttcaaaatttgcagtaaataacaattcaaattttctatc
aattcagtggatgtcaaaaagtgtgtcaaaatctagctaaaagcataaca
cgcaNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
atttaaaggagtgctcatttcaataggaaaacaatggttgttctcttggg
agaagtgccttctagaggtagttggttatctattatttttacatcgttgg
ttgGATGTAGGCAagaatttataatttttctgGTTTAATAATGGAAAGTC
TATAATACTGTACTatcaaaaaaatgataaaaaatgtaaatataattAGC
TTTAACATATAAGATATTAAGGTAAGACATTTCAGAAGCAATCCGTGGAC
CAGTCTGTAACACAGctcaaactttttttgggaGGCCTACATCCGGGGGG
AGGGGACTCATACGGTCCGACCCTCGGCATGTGCCGTCCTTAGGGATATG
TTTTTCGTTACCCTTCAAATgaactgtaagggtgtacttttgaaacagtg
cactacaagggtcttctttAAGCTGGTTACACTTCGGCTTCACCGAAATA
AGATATAAAATCAAACTaaactgtaagggtcagaaacgtgCGGTAAAATG
CACTTCTTTTTACTGCTTAAGGGCTGCActgtccgattttgaaagccatt
ttttggcggcacatgcaCCGTTGTTTATAAATCGATTGCCCCCTCCCGGC
CTACATCGTGTAACCAAGTTTTACAATTATTCCTCTTTCCAGGTGGTTTC
ACTCTTCTTTACGTCATAACAGAGGGTCCGACAGTCCATGAAGCTTACCA
AAAATGCGATCAAACCGGTGGACGTTTAAGCCCTCTACCTTTAACTGATG
ACCAAAGAACACTATACAACGGTCTAATGCAAAAGTAAGGAAGCTTATTT
CTAAATGTTTACCTCTCACAACAGATGCTAACACTTGTTCCCATAACAAg
catctttttattttattttataatctACCACttatgaatatcttttcaac
gtaAAATAGATTGCATTTCAATtcgaatttcatcaaaattcagACCCAAC
CACTAATGAGAGGTCttctgttttcaattaaaaaactaCTTTTGTTTTAA
TCGCCCCATTAACTTGTATTGCGGTGTTACAGTATATTAACACAAGGAAG
CACAAACCAAACCAatattaccctgagtatcagaggttgagttttcaaaa
aacatatcaacctctgaagacaaagtagagaaattttatcgcgcacgTTT
CAaactaatcactgtagaaagaatcaaagatgaagagcaaaatTACCATA
TtgatgtctagcagactgtatcagtatgcatgtTTATTATTGGTGAATTC
TCCAGAAACCACCAAGTGTGATTGAAATTagtttcttttaaaagaaattc
cGAAATGTATGATAGTAGTATTTAGTAGTAGTTACTATACACTATTAATT
ATGTTAATGTTACATCAATGGAATCGAAATGATAGACAGacctttatgtt
atgattctctatcgctGACTCTTTTTAGAAAgcgttgatgacatttttga
gttttcaacgacgcaaataaaaatatcaactttgaacttcatccaagatc
ttggattgtcgtcaaggttacttttctctgcgttgatggtcggcacaggt
cgatATAAGATTTCGgcatgtgcttttcacggtataaaTCAATATACATA
AATGTTCAAAATGTTATTTCCTAAATATAGTGTCATCCATCCAAAGTGAA
GCCATTAATTTATTACATTATTTTGTATTTCAGCAATGGATTGTCCCAAG
CTGTTGGTTTTAACGCACAAACAAAATATGCTACATTTACAAAATTGGTC
AAGAAGGTTACACTATGGAGAAATGctcagaagaaatttctaagcATTAT
CTATGTGTTTATGTCTTACTCGGCACAATACAACCTGTTCCTCTTATATC
TAACTTTTTTGGTCCCAATAACGAATATGAGATTAAGACTCGACTAAATG
AATTTTACACCGATACATTTCTATCCGCAAAGAAAACATGTGAAACGAAA
GGCAAAGAGCTTCTATCTATTGAAAGTTTGGATAAATTGGAAAGTTTCAA
CGCAGCTGCTACTGAAGCAGGTTATAAGTAAGATTTTTCTTTACATCAAA
TTCTACTTCCTTGATTATTATATGGGTGTTTCCACACTTCTCAAAAGTTT
CTATATACCGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00001398-exon-sc0000010-1491911889:1041340..1041374 | TCONS_00001398-exon-sc0000010-1491911889:1041340..1041374 | Clytia hemisphaerica | exon |
| TCONS_00001398-exon-sc0000010-1510915933:1041340..1041374 | TCONS_00001398-exon-sc0000010-1510915933:1041340..1041374 | Clytia hemisphaerica | exon |
| TCONS_00001398-exon-sc0000010-1575043694:1041340..1041374 | TCONS_00001398-exon-sc0000010-1575043694:1041340..1041374 | Clytia hemisphaerica | exon |
| TCONS_00001398-exon-sc0000010-1491911889:1043032..1043173 | TCONS_00001398-exon-sc0000010-1491911889:1043032..1043173 | Clytia hemisphaerica | exon |
| TCONS_00001398-exon-sc0000010-1510915933:1043032..1043173 | TCONS_00001398-exon-sc0000010-1510915933:1043032..1043173 | Clytia hemisphaerica | exon |
| TCONS_00001398-exon-sc0000010-1575043694:1043032..1043173 | TCONS_00001398-exon-sc0000010-1575043694:1043032..1043173 | Clytia hemisphaerica | exon |
| TCONS_00001398-exon-sc0000010-1491911889:1044073..1044500 | TCONS_00001398-exon-sc0000010-1491911889:1044073..1044500 | Clytia hemisphaerica | exon |
| TCONS_00001398-exon-sc0000010-1510915933:1044073..1044500 | TCONS_00001398-exon-sc0000010-1510915933:1044073..1044500 | Clytia hemisphaerica | exon |
| TCONS_00001398-exon-sc0000010-1575043694:1044073..1044500 | TCONS_00001398-exon-sc0000010-1575043694:1044073..1044500 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000010 | supercontig | sc0000010:1041340..1044500 + |
Blast
The following BLAST results are available for this feature:
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