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TCONS_00001398 (transcript) - C. hemisphaerica

Overview
NameTCONS_00001398
Unique NameTCONS_00001398
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length605

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00001398 ID=TCONS_00001398|Name=TCONS_00001398|organism=Clytia hemisphaerica|type=transcript|length=605bp
CCGAGATGAAGATCATTTCTGTTTACCGATTGCAGGTGGTTTCACTCTTC
TTTACGTCATAACAGAGGGTCCGACAGTCCATGAAGCTTACCAAAAATGC
GATCAAACCGGTGGACGTTTAAGCCCTCTACCTTTAACTGATGACCAAAG
AACACTATACAACGGTCTAATGCAAAACAATGGATTGTCCCAAGCTGTTG
GTTTTAACGCACAAACAAAATATGCTACATTTACAAAATTGGTCAAGAAG
GTTACACTATGGAGAAATGctcagaagaaatttctaagcATTATCTATGT
GTTTATGTCTTACTCGGCACAATACAACCTGTTCCTCTTATATCTAACTT
TTTTGGTCCCAATAACGAATATGAGATTAAGACTCGACTAAATGAATTTT
ACACCGATACATTTCTATCCGCAAAGAAAACATGTGAAACGAAAGGCAAA
GAGCTTCTATCTATTGAAAGTTTGGATAAATTGGAAAGTTTCAACGCAGC
TGCTACTGAAGCAGGTTATAAGTAAGATTTTTCTTTACATCAAATTCTAC
TTCCTTGATTATTATATGGGTGTTTCCACACTTCTCAAAAGTTTCTATAT
ACCGC
Run BLAST on NCBI

transcript from alignment at sc0000010:1041340..1044500+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00001398 ID=TCONS_00001398|Name=TCONS_00001398|organism=Clytia hemisphaerica|type=transcript|length=3161bp|location=Sequence derived from alignment at sc0000010:1041340..1044500+ (Clytia hemisphaerica)
CCGAGATGAAGATCATTTCTGTTTACCGATTGCAGGTACGAGCTCTTTTA TGAAATAAGATCAATTAAGCAACATAAAGAcagcattttcaattaaaaat tttcagttggattaacgatgtaaaaataatagataaccaacttgccttga ttctcaaaaaacatccgtgttacggttgtaaaaatattaatgacattttg catcgtaaaaagtgcaattNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNatcattttatgagcgtttatttatccagatgaagattaagtgg tatcaggccgatccgtagtcaatttgtctaaagattagtacctttatctt ttgaaaaaaatttcaaaatttgcagtaaataacaattcaaattttctatc aattcagtggatgtcaaaaagtgtgtcaaaatctagctaaaagcataaca cgcaNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN atttaaaggagtgctcatttcaataggaaaacaatggttgttctcttggg agaagtgccttctagaggtagttggttatctattatttttacatcgttgg ttgGATGTAGGCAagaatttataatttttctgGTTTAATAATGGAAAGTC TATAATACTGTACTatcaaaaaaatgataaaaaatgtaaatataattAGC TTTAACATATAAGATATTAAGGTAAGACATTTCAGAAGCAATCCGTGGAC CAGTCTGTAACACAGctcaaactttttttgggaGGCCTACATCCGGGGGG AGGGGACTCATACGGTCCGACCCTCGGCATGTGCCGTCCTTAGGGATATG TTTTTCGTTACCCTTCAAATgaactgtaagggtgtacttttgaaacagtg cactacaagggtcttctttAAGCTGGTTACACTTCGGCTTCACCGAAATA AGATATAAAATCAAACTaaactgtaagggtcagaaacgtgCGGTAAAATG CACTTCTTTTTACTGCTTAAGGGCTGCActgtccgattttgaaagccatt ttttggcggcacatgcaCCGTTGTTTATAAATCGATTGCCCCCTCCCGGC CTACATCGTGTAACCAAGTTTTACAATTATTCCTCTTTCCAGGTGGTTTC ACTCTTCTTTACGTCATAACAGAGGGTCCGACAGTCCATGAAGCTTACCA AAAATGCGATCAAACCGGTGGACGTTTAAGCCCTCTACCTTTAACTGATG ACCAAAGAACACTATACAACGGTCTAATGCAAAAGTAAGGAAGCTTATTT CTAAATGTTTACCTCTCACAACAGATGCTAACACTTGTTCCCATAACAAg catctttttattttattttataatctACCACttatgaatatcttttcaac gtaAAATAGATTGCATTTCAATtcgaatttcatcaaaattcagACCCAAC CACTAATGAGAGGTCttctgttttcaattaaaaaactaCTTTTGTTTTAA TCGCCCCATTAACTTGTATTGCGGTGTTACAGTATATTAACACAAGGAAG CACAAACCAAACCAatattaccctgagtatcagaggttgagttttcaaaa aacatatcaacctctgaagacaaagtagagaaattttatcgcgcacgTTT CAaactaatcactgtagaaagaatcaaagatgaagagcaaaatTACCATA TtgatgtctagcagactgtatcagtatgcatgtTTATTATTGGTGAATTC TCCAGAAACCACCAAGTGTGATTGAAATTagtttcttttaaaagaaattc cGAAATGTATGATAGTAGTATTTAGTAGTAGTTACTATACACTATTAATT ATGTTAATGTTACATCAATGGAATCGAAATGATAGACAGacctttatgtt atgattctctatcgctGACTCTTTTTAGAAAgcgttgatgacatttttga gttttcaacgacgcaaataaaaatatcaactttgaacttcatccaagatc ttggattgtcgtcaaggttacttttctctgcgttgatggtcggcacaggt cgatATAAGATTTCGgcatgtgcttttcacggtataaaTCAATATACATA AATGTTCAAAATGTTATTTCCTAAATATAGTGTCATCCATCCAAAGTGAA GCCATTAATTTATTACATTATTTTGTATTTCAGCAATGGATTGTCCCAAG CTGTTGGTTTTAACGCACAAACAAAATATGCTACATTTACAAAATTGGTC AAGAAGGTTACACTATGGAGAAATGctcagaagaaatttctaagcATTAT CTATGTGTTTATGTCTTACTCGGCACAATACAACCTGTTCCTCTTATATC TAACTTTTTTGGTCCCAATAACGAATATGAGATTAAGACTCGACTAAATG AATTTTACACCGATACATTTCTATCCGCAAAGAAAACATGTGAAACGAAA GGCAAAGAGCTTCTATCTATTGAAAGTTTGGATAAATTGGAAAGTTTCAA CGCAGCTGCTACTGAAGCAGGTTATAAGTAAGATTTTTCTTTACATCAAA TTCTACTTCCTTGATTATTATATGGGTGTTTCCACACTTCTCAAAAGTTT CTATATACCGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000740XLOC_000740Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001398-exon-sc0000010-1491911889:1041340..1041374TCONS_00001398-exon-sc0000010-1491911889:1041340..1041374Clytia hemisphaericaexon
TCONS_00001398-exon-sc0000010-1510915933:1041340..1041374TCONS_00001398-exon-sc0000010-1510915933:1041340..1041374Clytia hemisphaericaexon
TCONS_00001398-exon-sc0000010-1575043694:1041340..1041374TCONS_00001398-exon-sc0000010-1575043694:1041340..1041374Clytia hemisphaericaexon
TCONS_00001398-exon-sc0000010-1491911889:1043032..1043173TCONS_00001398-exon-sc0000010-1491911889:1043032..1043173Clytia hemisphaericaexon
TCONS_00001398-exon-sc0000010-1510915933:1043032..1043173TCONS_00001398-exon-sc0000010-1510915933:1043032..1043173Clytia hemisphaericaexon
TCONS_00001398-exon-sc0000010-1575043694:1043032..1043173TCONS_00001398-exon-sc0000010-1575043694:1043032..1043173Clytia hemisphaericaexon
TCONS_00001398-exon-sc0000010-1491911889:1044073..1044500TCONS_00001398-exon-sc0000010-1491911889:1044073..1044500Clytia hemisphaericaexon
TCONS_00001398-exon-sc0000010-1510915933:1044073..1044500TCONS_00001398-exon-sc0000010-1510915933:1044073..1044500Clytia hemisphaericaexon
TCONS_00001398-exon-sc0000010-1575043694:1044073..1044500TCONS_00001398-exon-sc0000010-1575043694:1044073..1044500Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000010supercontigsc0000010:1041340..1044500 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0895903 0 0.101439 0 0.48327 0.0954716 0.345547 0 0.830456 2.05731 0 0.492249 0.119167 0.123756 0.0508723 0.109188 0 0 0 0 0.0866209 0 0 0 0 0.0858465 0 0 0 0.101312
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00001398 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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