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TCONS_00001397 (transcript) - C. hemisphaerica

Overview
NameTCONS_00001397
Unique NameTCONS_00001397
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1076

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00001397 ID=TCONS_00001397|Name=TCONS_00001397|organism=Clytia hemisphaerica|type=transcript|length=1076bp
TGAAGCAAATAACGATGAAGGATTTCGTTGGTATACTTTTCTTCTTGAGT
TTTACTACAGGAATCAATTCACAGGCTGTACCATGTTCAGCAAATTTGGC
CGCTTTTGTTGCAGATCAAGAGATACGAGATGAAGATCATTTCTGCGTAC
AAAATCTGTCCGGTACATTCATACTTTACGTCATCACAGAGGGCCCGACA
GTCCATGACGCTTTCCAGAAATGCAGGCAAAATAGTGGGATGTTGACTTA
TAAGACTTTACCTGATGAGGAAAGAACACTATACGCTGGTTTAATGCAAA
AcAATGGATTGTCTCAAGCTGTTGGTTTCAGCGCAAACAAAATATGCTAC
ATTTACAAAATTGGTCAAGAGGGTTATACAATGGAGAGATGCTCAGAAGA
AATTTCCAAGCATTATCTATGTAGATACTTTTTTACAATACCACCCGTCC
CTGCttcatccttattttttggTCCCAATAACGAATACGAGCAAATAACT
CAACAAAGTGATGGGGGAGTGTACCCTGATACATTTCTATCCGCAAAGAA
ATCTTGTGAAGCGAAAGGCAAAGAAGTTTTATCGATTGAAAATCTGGCAA
AGTTCGAAAGTTTCTTCGATCTTTTTGCTGAAGCAGGCGCattCCTTCCT
ACTTTGTGGTTAGGAATGACATACGATCCATTTGACAAGAAGTTTCGATA
CTGTAACAAAGAAATCCAATCAACTTTTCGACCATGGTGTTCCAacacaa
atgattttgatgacgaAGGAAGACTATGTGTAGTTCTTGACTTCATAAGC
GGTTGCTTTCGACAAGTTTATTGTGGCTTGAGCACACCCAGTATTATTTG
TCAGCATCAATTTTCGCCTTTATCAACTTATGTTCGAGTTGCACAGAATT
TGATCAATGAAATTAAGAGCGATTGTAAATCATgcaagaaaaattgatga
aattgaCCCTGGTTATTCTTATAAGtgctatgcttataaatatcgtttaa
aaaagtgctataaGTATTTCTCCGTAATGGCTGGTCTctactttcgcgcg
aaatgagcgacagtttttttcttaac
Run BLAST on NCBI

transcript from alignment at sc0000010:1036085..1040591+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00001397 ID=TCONS_00001397|Name=TCONS_00001397|organism=Clytia hemisphaerica|type=transcript|length=4507bp|location=Sequence derived from alignment at sc0000010:1036085..1040591+ (Clytia hemisphaerica)
TGAAGCAAATAACGATGAAGGATTTCGTTGGTATACTTTTCTTCTTGAGT TTTACTACAGGAATCAATTCACAGGCTGTACCATGTTCAGCAAATTTGGC CGCTTTTGTTGCAGATCAAGAGATACGAGATGAAGATCATTTCTGCGTAC AAAATCTGTGTAGGCTTCAAATTCAACCTAAATTTAACATGTCGTAAAAA ctgctctcatccataaattttgcagggtatctcgctacgcctttGCATGT GATGCATAATGAAGCATAAAAtagtatttttgtgaaagttttgagCCTTT CCCATGGGATAAATTATAATCAACggttaaaaatgctctaaaaactACAT TTTTGGGTTCTAATGCCGATTCCATGCAGGTGATATTTTTAGCAAATTTA ATcatagatattcttataaagtatattcttataaaaaaccgtgtaGAAAT GAATTGCCAAGTATCCTTACATCTATTCAAATTCGACATATGGgaagtat tttattttctctttcaGCCGGTACATTCATACTTTACGTCATCACAGAGG GCCCGACAGTCCATGACGCTTTCCAGAAATGCAGGCAAAATAGTGGGATG TTGACTTATAAGACTTTACCTGATGAGGAAAGAACACTATACGCTGGTTT AATGCAAAAGTAAGGAAACTTCTTATCTGTTATTTTGATGGCAGAtaggc ggccgcccacgctaaagctatAAAGatgccaatttcccatcggagaggaa tgataggcggcctttgatgtgccgcatccccagtcgggttcaactaccct tgcacgtaaacctaaaaaatatttcggttgaaCCCGCCAATCcacgaaaa cgagggctgggttaccagacctcccgctgcaataTCTTTGACGTGGTCTT GCAAatttccgtaatctaaaccttccagatgttgaaagttttcCCGACTT TCCGAGCTTTAGCTTGTCGGatgccccggggggggggggtacttaggcaa atggagggtaagggtaccttttttggacttccaaagtcccgctaagggtt ggaaaaatcagaaaatcaaatttcagcccactaagggtcggaaaaatagg attatttcaactttttaccccctgaaagatcgaaatttggtcaaaattgg tcaaaattgtcCCGCTAACGctcgagtgacttagggcaagtctcaaaaac ctaacagtttaccctaagttttcgctaccaatagcagccagattcagaga gccacttagggctctaaagtacctctataccttaaggtttcaggacccgg tgttacgtaattaaatattaacccaaaaattaattattaaagaaattgta atggtgacgtcataatttgatcgaatttggtgacgtcatgaatcgtataa ttgctataatattaaaaatatatgtccaatctttcccaaattttaaccaa agatgtatctaactgaaatgtaattttttgaaaaaaaaattttggaaaaa tttgatgatgtcagcaaaaaattgcgtttttcgattttttgcattttttg ctgacgtcatcaaaatcttttgaaaatttttcattgaaaagtttgGCACC Attaagatgcatctttggtccaaatttgacaacgatttgacatgtactta tatagttagagctaatttacgatttatgacgtcataatttgatgacgtca taattcacaatttctttaataattaatttttaggttaatatttaattacg taacaaacGGTTCATGGCACCTTAAggtataggtcatctaaaaatcTATA AGTGAATAcctgagaatgggtgctattggtcgcggattcggGATTTGTGA TATTTAAAAATCTAGACATACCCTAACTCACCCGAGCGGTCGTAAAactc ccaaaattttcctttgcagATAAGGAAAGTTCTCTCCAATAAACGAGTAA TGTTTTGTCTTGTGTTGGTCCATTTCGTGAGGCATTAAGTCCCTTTTTGG GCGTCTTTGATATGATTCGGCTGAGGATCGAATCTACAatcttgcgcacc gtagctggatgctctaccgtTATAGTATAGCCGCTTGAACGGTATTAGGC TATTAAATTTATAATTGTCAtcataaaagaaatattttttcttttttttc cagcAATGGATTGTCTCAAGCTGTTGGTTTCAGCGCAAACAAAATATGCT ACATTTACAAAATTGGTCAAGAGGGTTATACAATGGAGAGATGCTCAGAA GAAATTTCCAAGCATTATCTATGTAGATACTTTTTTACAATACCACCCGT CCCTGCttcatccttattttttggTCCCAATAACGAATACGAGCAAATAA CTCAACAAAGTGATGGGGGAGTGTACCCTGATACATTTCTATCCGCAAAG AAATCTTGTGAAGCGAAAGGCAAAGAAGTTTTATCGATTGAAAATCTGGC AAAGTTCGAAAGTTTCTTCGATCTTTTTGCTGAAGCAGGCGCattgtaag acattttttatttagattttgtTATGGTATCACTATCGATAGTACCTCTC AATACAAtattatgtcaaaaatatttgTATCATCGCCTTATCATTACCTA GCCTTTTAGCCTTAAATATTATTCTAAAATGGCCAATTCCTTCACCAGTT AATAAAATCAACCACCTTACTGGAAGTTATTTCTCACCTCTCGAATATTG TTAGAATTTTGAGGTATAAGGAGGCACTTCGTAGAAAAAGTTTTAGTAGA AGCTGAGCGCTTTTTGATGTCTGCATTATAGTACCAGGATTTCTCCCAAT TCACCGTGTCTGACCGCagtcagtagacaagaattcacttGCAGCTCTAC CCAGTCGCAATTGAGTCATCGGGTTCcacatggacccgtagctcaatggt agagcaaatgccTACGATTGACATGGTTGCGAGTTCGAGTCTCGCTGGAT CTGTtagttttccaacggttctggtggctggtcagaaaacaatatgagag cgactgtattcacttcattgtatTACAGTACCAGCAATTCTTGACCTTTC TTTGTTTAGCCTTCCTACTTTGTGGCTAGGAATGACATACGATCCATTTG ACAAGAAGTTTCGATACTGTAACAAAGAAATCCAATCAACTTTTCGACCA TGGTGTTCCAacacaaatgattttgatgacgaAGGAAGACTATGTGTAGT TCTTGACTTCATAAGCGGTTGCTTTCGACAAGTTTATTGTGGCTTGAGCA CACCCAGCATTATTTGTCAGCATCAATTTTCGCCTTTATCAACTTATGTT CGAATTGCACAGAATTTAATCAATGAAATTAAGAGCGATTGTAAATCATg caagaaaaattgatgaaattgaCCCTGGTTATTCTTATAAGtgctatgct tataaatatcgTTTAAAAAAAGTGCTATAAGTATTTCTCCGTAATGGCCG GTCTctactttcgcgcgaaatgagcgacagtttttttcttaacctttttt gcccgaagaaaagattacgtcataaaaaagNTTTTGTTATGGTATCACTA TCGATAGTATCTCTCAATACAAtattatgtcaaaaatatttgTATCATCG CCTTATCATTACCTAGCCTTTTAGCCTTAAATATTATTCTAAAATGGCCA ATTCCTTCACCAGTTAATAAAATCAACCACCTTACTGGAAGTTATTTCTC ACCTCTCGAATATTGTTAGAATTTTGAGGTATAAGGAGGCACTTCGTAGA AAAAGTTTTAGTAGAAGCCGAGCGCTTTTTGATGTCTGCATTACAGTACC AGGATTTCTCCCAATTCACCGTGTCTGACCGCagtcagtagacaagaatt cacttGCAGCTCTACTCAGTGGCAATTGAGTCATCGGGTTCcacatggac ccgtagctcaatggtagagcaaatgcccgcGATTGACATGGTTGCGAGTT CGAGTCTCGCTGGATctgttggttttccaacggttctggtggctggtcag aaaacaatatgagagcgactgtattcacttcattgtatTACAGTACCAGC AATTCTTGACCTTTCTTTGTTTAGCCTTCCTACTTTGTGGTTAGGAATGA CATACGATCCATTTGACAAGAAGTTTCGATACTGTAACAAAGAAATCCAA TCAACTTTTCGACCATGGTGTTCCAacacaaatgattttgatgacgaAGG AAGACTATGTGTAGTTCTTGACTTCATAAGCGGTTGCTTTCGACAAGTTT ATTGTGGCTTGAGCACACCCAGTATTATTTGTCAGCATCAATTTTCGCCT TTATCAACTTATGTTCGAGTTGCACAGAATTTGATCAATGAAATTAAGAG CGATTGTAAATCATgcaagaaaaattgatgaaattgaCCCTGGTTATTCT TATAAGtgctatgcttataaatatcgtttaaaaaagtgctataaGTATTT CTCCGTAATGGCTGGTCTctactttcgcgcgaaatgagcgacagtttttt tcttaac
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000739XLOC_000739Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001397-exon-sc0000010-1491911889:1036085..1036243TCONS_00001397-exon-sc0000010-1491911889:1036085..1036243Clytia hemisphaericaexon
TCONS_00001397-exon-sc0000010-1510915933:1036085..1036243TCONS_00001397-exon-sc0000010-1510915933:1036085..1036243Clytia hemisphaericaexon
TCONS_00001397-exon-sc0000010-1575043694:1036085..1036243TCONS_00001397-exon-sc0000010-1575043694:1036085..1036243Clytia hemisphaericaexon
TCONS_00001397-exon-sc0000010-1491911889:1036602..1036743TCONS_00001397-exon-sc0000010-1491911889:1036602..1036743Clytia hemisphaericaexon
TCONS_00001397-exon-sc0000010-1510915933:1036602..1036743TCONS_00001397-exon-sc0000010-1510915933:1036602..1036743Clytia hemisphaericaexon
TCONS_00001397-exon-sc0000010-1575043694:1036602..1036743TCONS_00001397-exon-sc0000010-1575043694:1036602..1036743Clytia hemisphaericaexon
TCONS_00001397-exon-sc0000010-1491911889:1038238..1038579TCONS_00001397-exon-sc0000010-1491911889:1038238..1038579Clytia hemisphaericaexon
TCONS_00001397-exon-sc0000010-1510915933:1038238..1038579TCONS_00001397-exon-sc0000010-1510915933:1038238..1038579Clytia hemisphaericaexon
TCONS_00001397-exon-sc0000010-1575043694:1038238..1038579TCONS_00001397-exon-sc0000010-1575043694:1038238..1038579Clytia hemisphaericaexon
TCONS_00001397-exon-sc0000010-1491911889:1040159..1040591TCONS_00001397-exon-sc0000010-1491911889:1040159..1040591Clytia hemisphaericaexon
TCONS_00001397-exon-sc0000010-1510915933:1040159..1040591TCONS_00001397-exon-sc0000010-1510915933:1040159..1040591Clytia hemisphaericaexon
TCONS_00001397-exon-sc0000010-1575043694:1040159..1040591TCONS_00001397-exon-sc0000010-1575043694:1040159..1040591Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000010supercontigsc0000010:1036085..1040591 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.059097 0 0 0.113611 0.158828 0 0 0 0.107918 0.100354 0 0.482185 0.231792 2.64915 0.0871974 0.0939778 0 0 0.120125 0 0 0 0 0 0 0 0 0 0 0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00001397 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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