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TCONS_00001392 (transcript) - C. hemisphaerica

Overview
NameTCONS_00001392
Unique NameTCONS_00001392
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length786

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00001392 ID=TCONS_00001392|Name=TCONS_00001392|organism=Clytia hemisphaerica|type=transcript|length=786bp
CGTTAACACACAAATCAGACTTTTGAGAAGATTACTTACTTTCAAGGAAA
ATCTTTGAATGAATCTTTCAATTATGCTCTTATGGTCTATTGTTGTccaa
tttttattgttttaccCCGCACAAGGCGTTTATGGGGGTTTTAAATTTAC
TAAAACGCTAAAAAATCGCAAACTTAGCGGTTTCAAACATTTGTTTCAAA
GTGATGTGCGTTCTGGAGGGAAATGCGCGATGTTGTGTTCTGGTGATAAA
AAATGTCATTCGGTAAATTATCACCAGGAAAATACAGAATGCATGTTGAA
TTTTGAGGTGGTTGGGAATAATGTTGAAGAAAATTTGGAAGTTGAAGATG
GTTGGGTTTATTATGAGAAAAGTGAAGTAAGTTTATGCCACTGTGATATC
TGCTGCTAAGCTAGACTCAATTCTTTTATGCTTTGGATGCAGGCTATGCC
ACTAAAATGGAGTCCTTATACCCATAGTGAATCTTGTTTGATCGGTGATA
AAtttagacaggagacccgtcctgtatttttataatctgatgtatacagg
atgTTTACGACCTGTGAGacagatttctgcctcaaaaaatttacagtggg
aaattcaaATTTAGCGCTGTcttcacttactaaaataaaaatcaaatttc
ggaacttgtgctttctctaagaaagtgtgaccagtaaaagaataacaaaa
tttgattggttatgttttcaaccgttattaggatctgggaaattcaaact
ctcagcccataccatgctatatatttcgacatcagt
Run BLAST on NCBI

transcript from alignment at sc0000010:958156..958941+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00001392 ID=TCONS_00001392|Name=TCONS_00001392|organism=Clytia hemisphaerica|type=transcript|length=786bp|location=Sequence derived from alignment at sc0000010:958156..958941+ (Clytia hemisphaerica)
CGTTAACACACAAATCAGACTTTTGAGAAGATTACTTACTTTCAAGGAAA ATCTTTGAATGAATCTTTCAATTATGCTCTTATGGTCTATTGTTGTccaa tttttattgttttaccCCGCACAAGGCGTTTATGGGGGTTTTAAATTTAC TAAAACGCTAAAAAATCGCAAACTTAGCGGTTTCAAACATTTGTTTCAAA GTGATGTGCGTTCTGGAGGGAAATGCGCGATGTTGTGTTCTGGTGATAAA AAATGTCATTCGGTAAATTATCACCAGGAAAATACAGAATGCATGTTGAA TTTTGAGGTGGTTGGGAATAATGTTGAAGAAAATTTGGAAGTTGAAGATG GTTGGGTTTATTATGAGAAAAGTGAAGTAAGTTTATGCCACTGTGATATC TGCTGCTAAGCTAGACTCAATTCTTTTATGCTTTGGATGCAGGCTATGCC ACTAAAATGGAGTCCTTATACCCATAGTGAATCTTGTTTGATCGGTGATA AAtttagacaggagacccgtcctgtatttttataatctgatgtatacagg atgTTTACGACCTGTGAGacagatttctgcctcaaaaaatttacagtggg aaattcaaATTTAGCGCTGTcttcacttactaaaataaaaatcaaatttc ggaacttgtgctttctctaagaaagtgtgaccagtaaaagaataacaaaa tttgattggttatgttttcaaccgttattaggatctgggaaattcaaact ctcagcccataccatgctatatatttcgacatcagt
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000738XLOC_000738Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001392-exon-sc0000010-1491911889:958156..958941TCONS_00001392-exon-sc0000010-1491911889:958156..958941Clytia hemisphaericaexon
TCONS_00001392-exon-sc0000010-1510915933:958156..958941TCONS_00001392-exon-sc0000010-1510915933:958156..958941Clytia hemisphaericaexon
TCONS_00001392-exon-sc0000010-1575043694:958156..958941TCONS_00001392-exon-sc0000010-1575043694:958156..958941Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000010supercontigsc0000010:958156..958941 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.15105 1.25408 1.37983 1.4861 0.568522 1.01228 1.75462 1.30328 0.742695 0.810062 1.46044 0.972951 0.506856 0.5261 0.718775 0.388125 0.314213 0.157534 0.984811 0.921387 0.352783 0 0.43004 0.357752 0.621186 0.379005 0.557976 0.365991 0.195579 0.269484
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00001392 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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