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TCONS_00001391 (transcript) - C. hemisphaerica

Overview
NameTCONS_00001391
Unique NameTCONS_00001391
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2117

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00001391 ID=TCONS_00001391|Name=TCONS_00001391|organism=Clytia hemisphaerica|type=transcript|length=2117bp
TTCATTGAATAGCAAAACTAAGTGTGTTGCCATAAAGATGTCATAATAAG
AATGAAACAGTTTATTAACAACCTAAGACAAgttaaaaaatcactttttt
ataTCTACATACTTTTTCTACACTTTCATAGTCACGTTAACACACAAATC
AGACTTTTGAGAAGATTACTTACTTTCAAGGAAAATCTTTGAATGAATCT
TTCAATTATGCTCTTATGGTCTATTGTTGTccaatttttattgttttacc
CCGCACAAGGCGTTTATGGGGGTTTTAAATTTACTAAAACGCTAAAAAAT
CGCAAACTTAGCGGTTTCAAACATTTGTTTCAAAGTGATGTGCGTTCTGG
AGGGAAATGCGCGATGTTGTGTTCTGGTGATAAAAAATGTCATTCGGTAA
ATTATCACCAGGAAAATACAGAATGCATGTTGAATTTTGAGGTGGTTGGG
AATAATGTTGAAGAAAATTTGGAAGTTGAAGATGGTTGGGTTTATTATGA
GAAAAGTGAAGACACTGAACCAATTGTAGCCAAAACGAGCAGCAAGTTTG
ATTACACTGGTGTTGCGTTCAGGGCAAAGAAGAACAATTTGGTACACATC
ATTCCATTCATTGGCAAAGAATTCACATTCGAATTCAACTTCACTTACTT
CACTACTGACAGCTCTGTAGAATACTCGTGCGCTTTATTGTGTACAACGT
TTTCTGCTTGGACGGAAAGATATCCTGCTATTTGGATCATGCCAGGCGGA
TTAGTTCAATTTGAAGTGTCTTATGATGTTGAGCAAACTAAGCCAACTAA
AACACTTATTGCAAAAAATAAGGTACGCGAACCAAACCAAAAATACAACA
TGCTGGTTTCATCAACTTACGATTCTACCTCTGGAAAATACAAGTTCATT
TTTAAAGTGGATGGAGTCATAGAGACCTCTACCACAGTCAGTGACGTGCC
AGAATTTCAGAATCTAAAATGCTATGTCGGCGACCCTGGCCATACACCAT
CGTATGCCGTCATCGAAGACTTCAAATTCAAACCGGAAGgtcaataaata
ttttcaaacccTATTGGGACGTTTTTGATAAAAGTATATCACAATTGTGC
TTAAATTCTGCGTCGCTTATCGGGTTTGTTGGTGCATTCTTTTATCTATT
TACTctatttaaccctattcgtactggGGGATGGCTTCTTCTGTTTAGCG
GGGAAACAAATGCTTATAGCTCCTAACATGATAGATCTTTTGGCAtgaat
ttctattttatttagcttcaaaataaaaaaaaattgacacgcCTTGTCAG
CATATTGTCATTTCTGAATGAAAGGTGTATGTTGTAAAAATTGACATATT
TTCagtataaatttatttttcaaatcacatacacgctttttttataagaa
tatcttctataagaatatcagggtgaaaattggccaaatcgtaagaatac
cctaaaaATACCCTCtaggttgaatttcaaaaaatttgataagaatacag
tcattttgtatttggctAACAGAAAAAACTGCATTTGTTAGAGATAGAAT
GAAGCTTTaaggaagaaatgtaattttaacccaaatatTCACTCAAAGTC
CAAAGTTTTCAAATTGATTATTTCTCAtgcttgttaaaagtcaagtctaa
aaaagtaagaatactttaagaatatttcaccctcaactttggcactttct
taagaacatttgaccctcatccaaagtatactattcttataaaaaaatgc
gtGTATACTGTtcaaaccgtaatttattgaatatttaggataaaataaac
ttcgaacttttttctaaagcctttgtttcGTCCTTTGAGAGAACAGAGGA
AAGACTATCTTATATACTCTAATCTAACAAAAATGTCGTTTGCTGACGGA
ATATCAATAGTCGCGTCTTCTTTAAGAAATATCTGCTTTTCCTTTTTCAG
AGGAATGTATAtgctaaattttgactttgggtCATCTTTTTGTTGAGGAT
ATACTCCACTTTTTGCTACTTCACATGCGTACGCGTGCGCAGAGAGTCAG
ACTATCGGGCTTTTATGTCGAttccagatgagatggagtttttataacat
actttaataattggcca
Run BLAST on NCBI

protein sequence of TCONS_00001391-protein

>TCONS_00001391-protein ID=TCONS_00001391-protein|Name=TCONS_00001391-protein|organism=Clytia hemisphaerica|type=polypeptide|length=284bp
MNLSIMLLWSIVVQFLLFYPAQGVYGGFKFTKTLKNRKLSGFKHLFQSDV
RSGGKCAMLCSGDKKCHSVNYHQENTECMLNFEVVGNNVEENLEVEDGWV
YYEKSEDTEPIVAKTSSKFDYTGVAFRAKKNNLVHIIPFIGKEFTFEFNF
TYFTTDSSVEYSCALLCTTFSAWTERYPAIWIMPGGLVQFEVSYDVEQTK
PTKTLIAKNKVREPNQKYNMLVSSTYDSTSGKYKFIFKVDGVIETSTTVS
DVPEFQNLKCYVGDPGHTPSYAVIEDFKFKPEGQ
Run BLAST on NCBI

transcript from alignment at sc0000010:958022..961402+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00001391 ID=TCONS_00001391|Name=TCONS_00001391|organism=Clytia hemisphaerica|type=transcript|length=3381bp|location=Sequence derived from alignment at sc0000010:958022..961402+ (Clytia hemisphaerica)
TTCATTGAATAGCAAAACTAAGTGTGTTGCCATAAAGATGTCATAATAAG AATGAAACAGTTTATTAACAACCTAAGACAAgttaaaaaatcactttttt ataTCTACATACTTTTTCTACACTTTCATAGTCACGTTAACACACAAATC AGACTTTTGAGAAGATTACTTACTTTCAAGGAAAATCTTTGAATGAATCT TTCAATTATGCTCTTATGGTCTATTGTTGTccaatttttattgttttacc CCGCACAAGGCGTTTATGGGGGTTTTAAATTTACTAAAACGCTAAAAAAT CGCAAACTTAGCGGTTTCAAACATTTGTTTCAAAGTGATGTGCGTTCTGG AGGGAAATGCGCGATGTTGTGTTCTGGTGATAAAAAATGTCATTCGGTAA ATTATCACCAGGAAAATACAGAATGCATGTTGAATTTTGAGGTGGTTGGG AATAATGTTGAAGAAAATTTGGAAGTTGAAGATGGTTGGGTTTATTATGA GAAAAGTGAAGTAAGTTTATGCCACTGTGATATCTGCTGCTAAGCTAGAC TCAATTCTTTTATGCTTTGGATGCAGGCTATGCCACTAAAATGGAGTCCT TATACCCATAGTGAATCTTGTTTGATCGGTGATAAAtttagacaggagac ccgtcctgtatttttataatctgatgtatacaggatgTTTACGACCTGTG AGacagatttctgcctcaaaaaatttacagtgggaaattcaaATTTAGCG CTGTcttcacttactaaaataaaaatcaaatttcggaacttgtgctttct ctaagaaagtgtgaccagtaaaagaataacaaaatttgattggttatgtt ttcaaccgttattaggatctgggaaattcaaactctcagcccataccatg ctatatatttcgacatcagtatatagaataagaaatcatagcatgggtCT CCAGGCTACGATAAATTAGCCTCAAAACTTCACCTAATCGGTGACACAAG GGAAATCATCTTTGTTACATATACTTTTCAGTAGAGCAAAGACAAGGTGG gagcaaaatttgtgtaggagagcagaattttatgataattataATGATTT TaggataattactgtgtcataaaaatctgcccTTCTACAGAGATTTCACG CCCCCCCCCTTGTCTACGCCACTGCTTTCTTTCTTTAGGACACTGAACCA ATTGTAGCCAAAACGAGCAGCAAGTTTGATTACACTGGTGTTGGTAAGTC TTATTTAATTTGATGTTGAAGTGAAGCTAAAATACTCAAAGTGAAGCGTA AAATCTTTGATTAACTGTTTTGCTGTTTTCGTGCGGGGGAGGGGTACCAG GTACCAGATGATTTGACCAGATATGTGTTAGCGttcgaaaatctttcaaa taatttgaaaatctactcattctttaaaggttttgtttttaagtaagagt gatatcatttgtttactcatcaattttaattcacaagcttttgcacattg aattgacacggatgtggagcaagattagtcaaaaagaggaaaagaaaaac atttttttgcttgtatcaAAATagtataacaataggcagacactgtcctg atatgaaatatatgtgtctgatatgaaacgggagcaCTTATGTAAAGATA AAAGGTTTGCGCTCAACATTGGTGGGTATATATTAGGGTATATATTAGTT TATAAACATCCTGTCGTACAAGAAGGTaaccagccggcacacaacgttat ttcaacgtccatataacgttagaagaacgttaaaacaacgttgtgtgcca gctgggtaagaAATGTCTTTTCTCTACAGCGTTCAGGGCAAAGAAGAACA ATTTGGTACACATCATTCCATTCATTGGCAAAGAATTCACATTCGAATTC AACTTCACTTACTTCACTACTGACAGCTCTGTAGAATACTCGTGCGCTTT ATTGTGTACAACGTTTTCTGCTTGGACGGAAAGATATCCTGCTATTTGGA TCATGCCAGGCGGATTAGTTCAATTTGAAGTGTCTTATGATGTTGAGCAA ACTAAGCCAACTAAAACACTTATTGCAAAAAATAAGGTACGCGAACCAAA CCAAAAATACAACATGCTGGTTTCATCAACTTACGATTCTACCTCTGGAA AATACAAGTTCATTTTTAAAGTGGATGGAGTCATAGAGACCTCTACCACA GTCAGTGACGTGCCAGAATTTCAGAATCTAAAATGCTATGTCGGCGACCC TGGCCATACACCATCGTATGCCGTCATCGAAGACTTCAAATTCAAACCGG AAGgtcaataaatattttcaaacccTATTGGGACGTTTTTGATAAAAGTA TATCACAATTGTGCTTAAATTCTGCGTCGCTTATCGGGTTTGTTGGTGCA TTCTTTTATCTATTTACTctatttaaccctattcgtactggGGGATGGCT TCTTCTGTTTAGCGGGGAAACAAATGCTTATAGCTCCTAACATGATAGAT CTTTTGGCAtgaatttctattttatttagcttcaaaataaaaaaaaattg acacgcCTTGTCAGCATATTGTCATTTCTGAATGAAAGGTGTATGTTGTA AAAATTGACATATTTTCagtataaatttatttttcaaatcacatacacgc tttttttataagaatatcttctataagaatatcagggtgaaaattggcca aatcgtaagaataccctaaaaATACCCTCtaggttgaatttcaaaaaatt tgataagaatacagtcattttgtatttggctAACAGAAAAAACTGCATTT GTTAGAGATAGAATGAAGCTTTaaggaagaaatgtaattttaacccaaat atTCACTCAAAGTCCAAAGTTTTCAAATTGATTATTTCTCAtgcttgtta aaagtcaagtctaaaaaagtaagaatactttaagaatatttcaccctcaa ctttggcactttcttaagaacatttgaccctcatccaaagtatactattc ttataaaaaaatgcgtGTATACTGTtcaaaccgtaatttattgaatattt aggataaaataaacttcgaacttttttctaaagcctttgtttcGTCCTTT GAGAGAACAGAGGAAAGACTATCTTATATACTCTAATCTAACAAAAATGT CGTTTGCTGACGGAATATCAATAGTCGCGTCTTCTTTAAGAAATATCTGC TTTTCCTTTTTCAGAGGAATGTATAtgctaaattttgactttgggtCATC TTTTTGTTGAGGATATACTCCACTTTTTGCTACTTCACATGCGTACGCGT GCGCAGAGAGTCAGACTATCGGGCTTTTATGTCGAttccagatgagatgg agtttttataacatactttaataattggcca

Coding sequence (CDS) from alignment at sc0000010:958022..961402+

>TCONS_00001391 ID=TCONS_00001391|Name=TCONS_00001391|organism=Clytia hemisphaerica|type=CDS|length=2565bp|location=Sequence derived from alignment at sc0000010:958022..961402+ (Clytia hemisphaerica)
ATGAATCTTTCAATTATGCTCTTATGGTCTATTGTTGTccaatttttatt
gttttaccCCGCACAAGGCGTTTATGGGGGTTTTAAATTTACTAAAACGC
TAAAAAATCGCAAACTTAGCGGTTTCAAACATTTGTTTCAAAGTGATGTG
CGTTCTGGAGGGAAATGCGCGATGTTGTGTTCTGGTGATAAAAAATGTCA
TTCGGTAAATTATCACCAGGAAAATACAGAATGCATGTTGAATTTTGAGG
TGGTTGGGAATAATGTTGAAGAAAATTTGGAAGTTGAAGATGGTTGGGTT
TATTATGAGAAAAGTGAAGACACTGAACCAATTGTAGCCAAAACGAGCAG
CAAGTTTGATTACACTGGTGTTGCGTTCAGGGCAAAGAAGAACAATTTGG
TACACATCATTCCATTCATTGGCAAAGAATTCACATTCGAATTCAACTTC
ACTTACTTCACTACTGACAGCTCTGTAGAATACTCGTGCGCTTTATTGTG
TACAACGTTTTCTGCTTGGACGGAAAGATATCCTGCTATTTGGATCATGC
CAGGCGGATTAGTTCAATTTGAAGTGTCTTATGATGTTGAGCAAACTAAG
CCAACTAAAACACTTATTGCAAAAAATAAGGTACGCGAACCAAACCAAAA
ATACAACATGCTGGTTTCATCAACTTACGATTCTACCTCTGGAAAATACA
AGTTCATTTTTAAAGTGGATGGAGTCATAGAGACCTCTACCACAGTCAGT
GACGTGCCAGAATTTCAGAATCTAAAATGCTATGTCGGCGACCCTGGCCA
TACACCATCGTATGCCGTCATCGAAGACTTCAAATTCAAACCGGAAGgtc
aataaATGAATCTTTCAATTATGCTCTTATGGTCTATTGTTGTccaattt
ttattgttttaccCCGCACAAGGCGTTTATGGGGGTTTTAAATTTACTAA
AACGCTAAAAAATCGCAAACTTAGCGGTTTCAAACATTTGTTTCAAAGTG
ATGTGCGTTCTGGAGGGAAATGCGCGATGTTGTGTTCTGGTGATAAAAAA
TGTCATTCGGTAAATTATCACCAGGAAAATACAGAATGCATGTTGAATTT
TGAGGTGGTTGGGAATAATGTTGAAGAAAATTTGGAAGTTGAAGATGGTT
GGGTTTATTATGAGAAAAGTGAAGACACTGAACCAATTGTAGCCAAAACG
AGCAGCAAGTTTGATTACACTGGTGTTGCGTTCAGGGCAAAGAAGAACAA
TTTGGTACACATCATTCCATTCATTGGCAAAGAATTCACATTCGAATTCA
ACTTCACTTACTTCACTACTGACAGCTCTGTAGAATACTCGTGCGCTTTA
TTGTGTACAACGTTTTCTGCTTGGACGGAAAGATATCCTGCTATTTGGAT
CATGCCAGGCGGATTAGTTCAATTTGAAGTGTCTTATGATGTTGAGCAAA
CTAAGCCAACTAAAACACTTATTGCAAAAAATAAGGTACGCGAACCAAAC
CAAAAATACAACATGCTGGTTTCATCAACTTACGATTCTACCTCTGGAAA
ATACAAGTTCATTTTTAAAGTGGATGGAGTCATAGAGACCTCTACCACAG
TCAGTGACGTGCCAGAATTTCAGAATCTAAAATGCTATGTCGGCGACCCT
GGCCATACACCATCGTATGCCGTCATCGAAGACTTCAAATTCAAACCGGA
AGgtcaataaATGAATCTTTCAATTATGCTCTTATGGTCTATTGTTGTcc
aatttttattgttttaccCCGCACAAGGCGTTTATGGGGGTTTTAAATTT
ACTAAAACGCTAAAAAATCGCAAACTTAGCGGTTTCAAACATTTGTTTCA
AAGTGATGTGCGTTCTGGAGGGAAATGCGCGATGTTGTGTTCTGGTGATA
AAAAATGTCATTCGGTAAATTATCACCAGGAAAATACAGAATGCATGTTG
AATTTTGAGGTGGTTGGGAATAATGTTGAAGAAAATTTGGAAGTTGAAGA
TGGTTGGGTTTATTATGAGAAAAGTGAAGACACTGAACCAATTGTAGCCA
AAACGAGCAGCAAGTTTGATTACACTGGTGTTGCGTTCAGGGCAAAGAAG
AACAATTTGGTACACATCATTCCATTCATTGGCAAAGAATTCACATTCGA
ATTCAACTTCACTTACTTCACTACTGACAGCTCTGTAGAATACTCGTGCG
CTTTATTGTGTACAACGTTTTCTGCTTGGACGGAAAGATATCCTGCTATT
TGGATCATGCCAGGCGGATTAGTTCAATTTGAAGTGTCTTATGATGTTGA
GCAAACTAAGCCAACTAAAACACTTATTGCAAAAAATAAGGTACGCGAAC
CAAACCAAAAATACAACATGCTGGTTTCATCAACTTACGATTCTACCTCT
GGAAAATACAAGTTCATTTTTAAAGTGGATGGAGTCATAGAGACCTCTAC
CACAGTCAGTGACGTGCCAGAATTTCAGAATCTAAAATGCTATGTCGGCG
ACCCTGGCCATACACCATCGTATGCCGTCATCGAAGACTTCAAATTCAAA
CCGGAAGgtcaataa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000738XLOC_000738Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001391-proteinTCONS_00001391-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001391-exon-sc0000010-1491911889:958022..958531TCONS_00001391-exon-sc0000010-1491911889:958022..958531Clytia hemisphaericaexon
TCONS_00001391-exon-sc0000010-1510915933:958022..958531TCONS_00001391-exon-sc0000010-1510915933:958022..958531Clytia hemisphaericaexon
TCONS_00001391-exon-sc0000010-1575043694:958022..958531TCONS_00001391-exon-sc0000010-1575043694:958022..958531Clytia hemisphaericaexon
TCONS_00001391-exon-sc0000010-1491911889:959210..959264TCONS_00001391-exon-sc0000010-1491911889:959210..959264Clytia hemisphaericaexon
TCONS_00001391-exon-sc0000010-1510915933:959210..959264TCONS_00001391-exon-sc0000010-1510915933:959210..959264Clytia hemisphaericaexon
TCONS_00001391-exon-sc0000010-1575043694:959210..959264TCONS_00001391-exon-sc0000010-1575043694:959210..959264Clytia hemisphaericaexon
TCONS_00001391-exon-sc0000010-1491911889:959851..961402TCONS_00001391-exon-sc0000010-1491911889:959851..961402Clytia hemisphaericaexon
TCONS_00001391-exon-sc0000010-1510915933:959851..961402TCONS_00001391-exon-sc0000010-1510915933:959851..961402Clytia hemisphaericaexon
TCONS_00001391-exon-sc0000010-1575043694:959851..961402TCONS_00001391-exon-sc0000010-1575043694:959851..961402Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000010supercontigsc0000010:958022..961402 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.317653 0.294601 0 0 0.339317 0 0.103792 0 0 0.662707 0.290591 0.105673 0.755455 0.744732 0.142875 0 0.171045 0 0.238746 0.279891 0.486552 0.401741 0.605539 0.551718 0 0.723302 0.315156 0.368209 0 0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR003609Pan_app
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00001391 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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