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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00001389 ID=TCONS_00001389|Name=TCONS_00001389|organism=Clytia hemisphaerica|type=transcript|length=244bp
AGAGATTAACATactgaataaaataaaaataacagcAATACTGATTGGTA
TTCCAGACGTTGGTTGGATTCTATGAAGACCGGATTCTGGAACAGTTCAC
TTGCCATACAACTTAAGAAGTACAATGCAGAATATCTCCTTTCACAGCTT
AAGTAACATCCAAAAGTATTCCAAAAAATTGGTATTATTGATACGTGAAT
AAGGAAGGAAGGAGTAATGGAACCCACACCACCATCGATAATGA Run BLAST on NCBI transcript from alignment at sc0000010:883719..892228+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00001389 ID=TCONS_00001389|Name=TCONS_00001389|organism=Clytia hemisphaerica|type=transcript|length=8510bp|location=Sequence derived from alignment at sc0000010:883719..892228+ (Clytia hemisphaerica)
AGAGATTAACATactgaataaaataaaaataacagcAATACTGATTGGTA
TTCCAGACGTTGGTTGGATTCTATGAAGACCGGATTCTGGAACAGTTCAC
TTGCCATACAACTTAAGAAGTACAATGCAGAATATCTCCTTTCACAGCTT
AAGTAACATCCAAAAGTATTCCAGTAAGCTTTCAAcgtcattttcatttt
attaatgTCATTTACTGATTTTTTCATAACCGCCGTTATGGTTAATGTTA
TAATAAGGCCTCCAGCGGTTTACGTGATGGCCTGATCTATGAGGTCAAAA
AGCTTTCGTAATATTTATATGCAAATTTTGTAGTATGATATTGtttagcc
aaatttgatatATGATATGAATACATATATCANCCCAAATTTTGTAGTAT
GATATTGAACGTGtttagccaaatttgatatATGATATGAATACATCTAT
CAACTCTTAGTGGCACAGTCGACTTTTTAGGGAACTATGGcaatgaattt
acaaggaaaattattttcggTGCACGGCTTTTTTAAGACTGCCTCTAAAA
CAAACCCAGAAAACTCCCGCAAAACTTCATACCATATGAGAGACATTTTC
CTTTGCGCTTAGCCTGTACCAAATTCTTCTTCGCTGGCTGAAAAGATAAC
GCGAAGTTCAGTTTGTTACGGTTAGGCAACATTCCgtgtttcatattttt
tttccaCAGATCTCTGAATGTCTCTGCGGTGGAGCATACTCAGGTAATTT
AATGCATGTCCTAATTTTCGGTAATTTTTCGGAagcatttttgagatttt
ggctAAAAACCTGTTCTTCAGGCcatttgtgatgacgtcacaaaacaaaa
aaattgattatctcAAGAACTAGCTAATTAAACttcatgaaattttcacc
aatgaTAGACATTACCACAAGTAGTATTCTGATAGCAAAATCGATTTATT
GCAATTTCTTTCTccagattggctcattcaatttttccgaTATTTTTCAC
AAAGAATTAAAATggtaaacccttgaatgtgacgcagcccgattttcaaa
aaaaaaaatttgggtcaatTAGGGCCAATATatgccaaaaatgaggtttc
cCTCGAGTTCGAATCATTAAAtgcttctgattttttgcataaagacaGAG
CACCATCATAGGGAAGAAATTATCgaaacattttcttcaaaaagtttttc
agctCAGAGAataaattttgggcaaatttcagccaaaaaacttCTAATAA
AAGGGTTTTTAAGACAAATAACTAactgtgaaaaattggataattaattt
tttccatcgatcttttttctgattttttgcatgaaagtaggctaacatca
ttggtaaaagatggttgaaaaaaagttttttcggcTCAAagaacgaatct
ttatctataagaatcgctatttataagcatagatcaatgttcttgtggtc
attattattatttttagtttttttataagatgaaaatgtcacggtggagg
gcaatggtttgagttttctagaaacacttattatttttttggctgaaaaa
cgaatctttatctataagaatcactatatATAAGCATAGGTCAatattat
ttttggacctaccccggtggaggtcctataaattaacctctgttcgtccg
ttcgttcgtccgttagttcgttaccaacttttctcgagattggctcatta
gtttttcctgatttttggcacaatgatgcaaaatagtaatgcccaaaatg
tgacggattttcgaaaaaaaatatatttgggcaaatttgggccaaaactg
gaagatggagggcaagattctctaaagaatggctgtagtggtttttcccg
gaaaattcttattcgccctaaaaaacggattttcgtattttggggaaatt
ccctttaaccaaataagaaaatatagcttttctcaatgttgactcattat
tttttcctgattttttgcacaatgatgcaaaatggcaatgcctaaaatgt
gacggagcccgattttggaaaaaaaatatatttgggcaaatttgggccaa
aaattgcctaaaaatagggttttttggactttgtacaaaatcttgtcatt
acttttttctgattttttgcacaatgatgcaaaatgacaatacctaaaat
gtggcgaagcccgattttcaaaaaacgtttttttccggctgaaaaatgcc
agaaatatgccggaaaatttggttttttagcattttctcaagattttatc
attggttttttctgatttttttgctcaaagatgcgtattaacaatgccca
aaacatggcctcgttcgatttttgagaaaaaaatttttccggttgaaaat
gccgtgtttgcagattttcattggattttttccttatattcatttctatg
ttttttacacaaaaacattattgataacaatgctcaccatcaagcatgat
tcaatNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNccccc
ccccccccatcaacaatcaatgatgaactTATTGCATTACtgtatgcatt
ttcgctaaacgctatattttctgactgactttttttcatttttctcctcg
cattgctatctaactttcatcatcaggtaggtccattcagaaTGTagctt
gttattattattttttctaaaagaagaaaatgtcgcAGTGTAGAGCgcaa
tggtttgagttttctagaaaccttaTTTATCAAGCTGTGCATTCTTCTGA
TAGcggattgtttttataaagaaaagcgatTAATAGCCTTTCAAATGAAG
ATAAAATCCATCGCTAGATTTGAATGATATGTCGTGCGAAAACAAAGACA
GGGCTAGATTCAATCCTTCATTCTAAATTCGGTGCAAATCTTATGgcttg
actttttttttgctcgAGAAAGGTTGAAGGTTCCTCTCTAGACCCTTATA
CAAACTCGGTGTGGTAGCAAGCAGGACAACTTGACATATTGTAGTGGTGT
TTGGGTGGCGCACTGCGGCCATATGTTTGATACTGATCGCGACCATAGAT
AACATTGATGTGCTGTGTATTTCTAGTCTAACTCCAGCTTGAATTTGCAA
CCAGAAGCTGCGGGCGAAATGGACGCCAAACTTGTaaggtttttcaaaat
aaaatgaacaaCAAGGGCGTTGACAGAAGGTAGTCAAATTATGGATTATT
AATTACTTAAATTGATTATTAAATAATTAGTAATTACTGCCATTAAATGA
ATCAGAACAAGAAAACTATCTGTtattttgaatacttttttAGACGCCGT
TGGGTAAATTTTAAACAAAGGTTAAACAAGTTCAGCGTTAAGTGTGGCCC
TAATCGGCGTAATGaacaaggatttattatacactggatatacaaatACA
AGTACCTGACttttgctgatttctcatgttctagctatgtccgcagtaat
aatattattgttcactctccttccctcattaaatgattttttgaaacatt
ttaattgcgttttttatcgaaaatcactcgtCCAATTCCCAATAGAGACT
TGAAGTTTTTCTGTGAGAGTCAAATTCTTCTATTTAATTGccaattataa
gtcgttatgacgtttcaagttgtgagaaagatgcaaaagatgtGTTGTGt
atgacaccagaaattttcaaacttcaaccacAAAAAAACCAACTTGCCAC
AACGTgcaagattttcataccacagtgacaccaagacactcaagtctaat
GCTTGTTACTTTTAGCTCTTGTGTTAacagttttgaaaagatattcccaa
ttgaaaatttcgtgttactataagcattttgttcgatttttcttgtctaa
tgatgtttttctcacattagatttcaccatagtccgtataaaaaaccctg
gtctggaagcctttttttttgtttctttccattgtttcttacttgaactt
gcgttgagaaattagtttgttttgctcactttttgattatgtgattaaat
cttaaaccaatcccaagaggagtacttggtaacgtgatcaaaaactgagc
aaatcgatttttatcttttgatattaaggaaaagctaacaaaaagttaaa
acgataagcttccagaccagtgtttttcaTAAGGACTATGATTTCACAAA
TGTGTCTGGCTTGGTCTTGgccttactttcaaagttttttccctgcaaag
gtacgaaaagaaaacgctagagaacttttttaaaatgagattaataaaca
tttttttaaatcacattCGAGCCGCCATGGcagtagactagagtctactt
gtggctgaactttgctttttgataatttttgatgacgctgagtccagtga
agtagactaggagcgtttggcgaggtcgccattNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNtaaaatctggcggactgttttacagtccgcctaagcaaaagca
tattaccatatactaccgggccacttaattgcgccatccagtctatcaaa
aagcttttaagtggaccccgggctaccaTGGCAGTTGTcttttgcggaca
aagctagaacatcaattgttttctgaaacaaaagaaatacaatggtcgct
ctccaccgttttatgagtCATTTATCCAGTGTCTCTTATAATTCCTTGGT
CAGAAGCTGTATACGGCCTAAAAGCAACGACTAAAACGAAAAAGAataga
cattttcataaattacatcacgaacatcacttgcctcgttttgaaattat
tgccatggtgattaactcccagcggattttattacaactactttctattc
ataaaaaaatcatttaatatcTCAAGGTATATGATCACCATggcaattgt
ttgaatacgaggtaaACAATGTGTTGTGTAAATCCTATCAacttgttctt
acaaaaaaatcaaaagagatGCAAGACATTTATAATTGCTTTTccgactt
ttttgaaattatgggTTTTCATGCCAACGTGTCTTAATAAGAAAAGTGca
tttacattaatttatttTCTCTTTGCGATGTGTTATTTAAGATAAGAGAT
TTGCAGCTTGTAtatgattttcgttatcgaGATGTGAAATGTTTGGACAA
ATGTAGAAAAATCGAGAATAATATTGAGTTGTGAGGTTTGGTGGTTGTAA
ACTAAAAAGAAATCATGAGAAGTTTCATAGAGGACTTGCAATCGAACAAT
TGGTTTTCAATAAAGATTATATTCTTGGCTACCTTAACAGCTATCTCCTC
TGGAACTGTTCTATTTATAAACGCATTGGTTGCTCCGGACTTGCAATGTG
AATGGGGTTTAACGACATTTGAAGTGACATCTATTTCAATTGCTTTTTAT
GCTGGCGAAGCCTTTGGTTCGTGGTATTGGGGCCGAATTGCTGACATTTA
TGGACGTAAAAACACGTTAATTGCGTCCACAGGCTCGATGTTATATTTTG
TCCTTATATCAGCAGCTAGTCAATCTTTTCATATTTATCTTTTATTGCGA
TTCTTTGTTGGTGCTGGATTCGCTGGGTCCTTCCTCTTAACCGTGATATA
TAACACGGAGTTCACGAAAAGCACGGATCACGGTAAAGCTGTGTTTTGGT
ACAATTTCGTCTACACCTTTGGTAGTTTATTTTCGATTGGTTTCTCTTAT
TGGACTTTGAACAATTATGGATGGAGAATCTACACTCTAGCAGTGATATC
ACCAACCATAATTTTACTTTATTTCATGATTGCTTATCTTCCTGAGTCGA
TACGATTTTTACAAGCTCAAGGGCGCACTTCAGAAGCTCTTGAAGTGATA
AAAGATGCCTGTAAAACTACCAAAACTGCTTTAACAAAAGACATGGATTT
ATTAAATATGAACTCTAATGCACCTGGCAAAACACAGGATTCGGGCTATA
TCCAAGTCCTATCAAAACACTGGATTAAGATTTTCGGGCTTTCGTTTTTC
GGTGTACCcatgtttttaagtttttacgGTTTACCGTTTTTCATTGAATA
TAAACTTCAGCATGCAAGNATAGCAGTGATATCACCAGCTATAATATTAC
TTTATTTCATGATTGCTTATCTTCCTGAATCGATACGATTTTTACAATCT
CAAGGACGTACTTCAGAAGCTCTTGAAGTGATAAAAGATGCCTGTAAAAC
TACCAAAACTGCTTTGACAAAAGAAATGGATCTATTAAATATGAACTCTG
ATGCACCTAGCAAAACAGAGGATTCGGGCTATTTCCAAGTCCTATCAAAA
CACTGGATCAATATTTTTGGGCTTTCGTTCTATGGAGTACCcatgttctt
aagtttttacGGTTTACCTTTTTTCATTGAATATAAACTTCAGCATGCAA
CGTGTACGTTGATTGTAAACGAGACAATTTCCCCAAAATGTGTTCCTCTT
ACTAATGGGGAGATCTTACGTTCATTTTTCATTAACCTTGGTTATCTACC
TGGCGCATTTATCGGTTATTTTATGGCGGAGAAAATTGGGCGTAAAATAT
TACTGAACACTACAACTGGCTTATTAGCTGTTTGTTATATCAGTCAGTTA
ATATGCTTACCTAACGCTATCAATTACTTCTTGTTGTTTCTATCATCTGG
TATGTCACTTTCAGCTACTTGTTTTATAGTGTTGTACGCGGCGGAATTAT
TCCCAACGAATGTTCGAATGACTTCTACAGGTATAGCTGCCTCAGTATGG
AAAATCTGCAGCATCTTGTCACCTGTATTGTTTCAACATTTGATTTACAC
AAATACGacttttgttattgttttaatgaGTGCTTGGAGCATTGTTGGAG
CCCTTGGACTTTGTCCTTTACCAGAAACTCTTGGACATGGCTTGAAGGAA
TTTTGACATTAATATTACAGCTATTGACATTACAATCAAGTCAGTTATGT
TTTAAATTCGTTAACTGGAAatgttattatttattttttatatttattta
gaattttcctCTAGTTAGTTCTAcaataaattgaataaaatttttACGTC
CCGAACAATGTTTAtctcgttttcaaaattttgctgtGGTAATTAATGCC
CAGAGAAACTTATGAAAATGTTACTCTATTAATAATATTAACACTTTACC
ACTCGACGGACATTATCAACCTGGTTATGGCTTGGTAAATGCAACCAAAA
TAACTTATAtaattcaaaatatgaaaatttagaaTTATAGAAAACCCATA
ATATTGCCATCCGTCAGCCTTTCAGATAGATGAATTTCGGATCAATattt
ggagttttttttttttcaaactatttGAATTTCAACACACTAAAAATTCT
GTTGCAAAGTACTGCTCGAATTACAAAGGTTCAAGTTATGCTATTTTAGG
AAAATGCTATGTTCAGAAAAAACAAACTAGGTGACTGAGATTTTGTCAGA
ATTATAGATGTTCAAATCACTGAGAGTTTTAAGTACATTGAATATTATCC
CATTGTTGTGAAGATTCGaaacttgaaaatataaaaGCAAAAACCTTCTT
CTTCGTTACCAAGAAACTGGATAATGAATGGGCTGTTCGATTTGGAAACA
AAAGAACATTCAACAGCAACAGCAACAGCATTCAatttctgtctcaaaat
tccTAGCCCTTTTCAAACAGTAGCTATGAGAAATTTCTTGCGAATCTTGA
TTAAGAGGTACAGAGAAGGTCGAGCTGACTTTAAAATGTTCGGTAAAATT
CGGTAAAATTCTGTCCGAGTATGTACTTATATTagagaatattttcaaaa
gtcaaatttaaaactttttatttcatttctatGTTACAGAAAAATTGGTA
TTATTGATACGTGAATAAGGAAGGAAGGAGTAATGGAACCCACACCACCA
TCGATAATGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00001389-exon-sc0000010-1491911889:883719..883891 | TCONS_00001389-exon-sc0000010-1491911889:883719..883891 | Clytia hemisphaerica | exon |
| TCONS_00001389-exon-sc0000010-1510915933:883719..883891 | TCONS_00001389-exon-sc0000010-1510915933:883719..883891 | Clytia hemisphaerica | exon |
| TCONS_00001389-exon-sc0000010-1575043694:883719..883891 | TCONS_00001389-exon-sc0000010-1575043694:883719..883891 | Clytia hemisphaerica | exon |
| TCONS_00001389-exon-sc0000010-1491911889:892158..892228 | TCONS_00001389-exon-sc0000010-1491911889:892158..892228 | Clytia hemisphaerica | exon |
| TCONS_00001389-exon-sc0000010-1510915933:892158..892228 | TCONS_00001389-exon-sc0000010-1510915933:892158..892228 | Clytia hemisphaerica | exon |
| TCONS_00001389-exon-sc0000010-1575043694:892158..892228 | TCONS_00001389-exon-sc0000010-1575043694:892158..892228 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000010 | supercontig | sc0000010:883719..892228 + |
Blast
The following BLAST results are available for this feature:
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