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TCONS_00001389 (transcript) - C. hemisphaerica

Overview
NameTCONS_00001389
Unique NameTCONS_00001389
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length244

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00001389 ID=TCONS_00001389|Name=TCONS_00001389|organism=Clytia hemisphaerica|type=transcript|length=244bp
AGAGATTAACATactgaataaaataaaaataacagcAATACTGATTGGTA
TTCCAGACGTTGGTTGGATTCTATGAAGACCGGATTCTGGAACAGTTCAC
TTGCCATACAACTTAAGAAGTACAATGCAGAATATCTCCTTTCACAGCTT
AAGTAACATCCAAAAGTATTCCAAAAAATTGGTATTATTGATACGTGAAT
AAGGAAGGAAGGAGTAATGGAACCCACACCACCATCGATAATGA
Run BLAST on NCBI

transcript from alignment at sc0000010:883719..892228+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00001389 ID=TCONS_00001389|Name=TCONS_00001389|organism=Clytia hemisphaerica|type=transcript|length=8510bp|location=Sequence derived from alignment at sc0000010:883719..892228+ (Clytia hemisphaerica)
AGAGATTAACATactgaataaaataaaaataacagcAATACTGATTGGTA TTCCAGACGTTGGTTGGATTCTATGAAGACCGGATTCTGGAACAGTTCAC TTGCCATACAACTTAAGAAGTACAATGCAGAATATCTCCTTTCACAGCTT AAGTAACATCCAAAAGTATTCCAGTAAGCTTTCAAcgtcattttcatttt attaatgTCATTTACTGATTTTTTCATAACCGCCGTTATGGTTAATGTTA TAATAAGGCCTCCAGCGGTTTACGTGATGGCCTGATCTATGAGGTCAAAA AGCTTTCGTAATATTTATATGCAAATTTTGTAGTATGATATTGtttagcc aaatttgatatATGATATGAATACATATATCANCCCAAATTTTGTAGTAT GATATTGAACGTGtttagccaaatttgatatATGATATGAATACATCTAT CAACTCTTAGTGGCACAGTCGACTTTTTAGGGAACTATGGcaatgaattt acaaggaaaattattttcggTGCACGGCTTTTTTAAGACTGCCTCTAAAA CAAACCCAGAAAACTCCCGCAAAACTTCATACCATATGAGAGACATTTTC CTTTGCGCTTAGCCTGTACCAAATTCTTCTTCGCTGGCTGAAAAGATAAC GCGAAGTTCAGTTTGTTACGGTTAGGCAACATTCCgtgtttcatattttt tttccaCAGATCTCTGAATGTCTCTGCGGTGGAGCATACTCAGGTAATTT AATGCATGTCCTAATTTTCGGTAATTTTTCGGAagcatttttgagatttt ggctAAAAACCTGTTCTTCAGGCcatttgtgatgacgtcacaaaacaaaa aaattgattatctcAAGAACTAGCTAATTAAACttcatgaaattttcacc aatgaTAGACATTACCACAAGTAGTATTCTGATAGCAAAATCGATTTATT GCAATTTCTTTCTccagattggctcattcaatttttccgaTATTTTTCAC AAAGAATTAAAATggtaaacccttgaatgtgacgcagcccgattttcaaa aaaaaaaatttgggtcaatTAGGGCCAATATatgccaaaaatgaggtttc cCTCGAGTTCGAATCATTAAAtgcttctgattttttgcataaagacaGAG CACCATCATAGGGAAGAAATTATCgaaacattttcttcaaaaagtttttc agctCAGAGAataaattttgggcaaatttcagccaaaaaacttCTAATAA AAGGGTTTTTAAGACAAATAACTAactgtgaaaaattggataattaattt tttccatcgatcttttttctgattttttgcatgaaagtaggctaacatca ttggtaaaagatggttgaaaaaaagttttttcggcTCAAagaacgaatct ttatctataagaatcgctatttataagcatagatcaatgttcttgtggtc attattattatttttagtttttttataagatgaaaatgtcacggtggagg gcaatggtttgagttttctagaaacacttattatttttttggctgaaaaa cgaatctttatctataagaatcactatatATAAGCATAGGTCAatattat ttttggacctaccccggtggaggtcctataaattaacctctgttcgtccg ttcgttcgtccgttagttcgttaccaacttttctcgagattggctcatta gtttttcctgatttttggcacaatgatgcaaaatagtaatgcccaaaatg tgacggattttcgaaaaaaaatatatttgggcaaatttgggccaaaactg gaagatggagggcaagattctctaaagaatggctgtagtggtttttcccg gaaaattcttattcgccctaaaaaacggattttcgtattttggggaaatt ccctttaaccaaataagaaaatatagcttttctcaatgttgactcattat tttttcctgattttttgcacaatgatgcaaaatggcaatgcctaaaatgt gacggagcccgattttggaaaaaaaatatatttgggcaaatttgggccaa aaattgcctaaaaatagggttttttggactttgtacaaaatcttgtcatt acttttttctgattttttgcacaatgatgcaaaatgacaatacctaaaat gtggcgaagcccgattttcaaaaaacgtttttttccggctgaaaaatgcc agaaatatgccggaaaatttggttttttagcattttctcaagattttatc attggttttttctgatttttttgctcaaagatgcgtattaacaatgccca aaacatggcctcgttcgatttttgagaaaaaaatttttccggttgaaaat gccgtgtttgcagattttcattggattttttccttatattcatttctatg ttttttacacaaaaacattattgataacaatgctcaccatcaagcatgat tcaatNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNccccc ccccccccatcaacaatcaatgatgaactTATTGCATTACtgtatgcatt ttcgctaaacgctatattttctgactgactttttttcatttttctcctcg cattgctatctaactttcatcatcaggtaggtccattcagaaTGTagctt gttattattattttttctaaaagaagaaaatgtcgcAGTGTAGAGCgcaa tggtttgagttttctagaaaccttaTTTATCAAGCTGTGCATTCTTCTGA TAGcggattgtttttataaagaaaagcgatTAATAGCCTTTCAAATGAAG ATAAAATCCATCGCTAGATTTGAATGATATGTCGTGCGAAAACAAAGACA GGGCTAGATTCAATCCTTCATTCTAAATTCGGTGCAAATCTTATGgcttg actttttttttgctcgAGAAAGGTTGAAGGTTCCTCTCTAGACCCTTATA CAAACTCGGTGTGGTAGCAAGCAGGACAACTTGACATATTGTAGTGGTGT TTGGGTGGCGCACTGCGGCCATATGTTTGATACTGATCGCGACCATAGAT AACATTGATGTGCTGTGTATTTCTAGTCTAACTCCAGCTTGAATTTGCAA CCAGAAGCTGCGGGCGAAATGGACGCCAAACTTGTaaggtttttcaaaat aaaatgaacaaCAAGGGCGTTGACAGAAGGTAGTCAAATTATGGATTATT AATTACTTAAATTGATTATTAAATAATTAGTAATTACTGCCATTAAATGA ATCAGAACAAGAAAACTATCTGTtattttgaatacttttttAGACGCCGT TGGGTAAATTTTAAACAAAGGTTAAACAAGTTCAGCGTTAAGTGTGGCCC TAATCGGCGTAATGaacaaggatttattatacactggatatacaaatACA AGTACCTGACttttgctgatttctcatgttctagctatgtccgcagtaat aatattattgttcactctccttccctcattaaatgattttttgaaacatt ttaattgcgttttttatcgaaaatcactcgtCCAATTCCCAATAGAGACT TGAAGTTTTTCTGTGAGAGTCAAATTCTTCTATTTAATTGccaattataa gtcgttatgacgtttcaagttgtgagaaagatgcaaaagatgtGTTGTGt atgacaccagaaattttcaaacttcaaccacAAAAAAACCAACTTGCCAC AACGTgcaagattttcataccacagtgacaccaagacactcaagtctaat GCTTGTTACTTTTAGCTCTTGTGTTAacagttttgaaaagatattcccaa ttgaaaatttcgtgttactataagcattttgttcgatttttcttgtctaa tgatgtttttctcacattagatttcaccatagtccgtataaaaaaccctg gtctggaagcctttttttttgtttctttccattgtttcttacttgaactt gcgttgagaaattagtttgttttgctcactttttgattatgtgattaaat cttaaaccaatcccaagaggagtacttggtaacgtgatcaaaaactgagc aaatcgatttttatcttttgatattaaggaaaagctaacaaaaagttaaa acgataagcttccagaccagtgtttttcaTAAGGACTATGATTTCACAAA TGTGTCTGGCTTGGTCTTGgccttactttcaaagttttttccctgcaaag gtacgaaaagaaaacgctagagaacttttttaaaatgagattaataaaca tttttttaaatcacattCGAGCCGCCATGGcagtagactagagtctactt gtggctgaactttgctttttgataatttttgatgacgctgagtccagtga agtagactaggagcgtttggcgaggtcgccattNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNtaaaatctggcggactgttttacagtccgcctaagcaaaagca tattaccatatactaccgggccacttaattgcgccatccagtctatcaaa aagcttttaagtggaccccgggctaccaTGGCAGTTGTcttttgcggaca aagctagaacatcaattgttttctgaaacaaaagaaatacaatggtcgct ctccaccgttttatgagtCATTTATCCAGTGTCTCTTATAATTCCTTGGT CAGAAGCTGTATACGGCCTAAAAGCAACGACTAAAACGAAAAAGAataga cattttcataaattacatcacgaacatcacttgcctcgttttgaaattat tgccatggtgattaactcccagcggattttattacaactactttctattc ataaaaaaatcatttaatatcTCAAGGTATATGATCACCATggcaattgt ttgaatacgaggtaaACAATGTGTTGTGTAAATCCTATCAacttgttctt acaaaaaaatcaaaagagatGCAAGACATTTATAATTGCTTTTccgactt ttttgaaattatgggTTTTCATGCCAACGTGTCTTAATAAGAAAAGTGca tttacattaatttatttTCTCTTTGCGATGTGTTATTTAAGATAAGAGAT TTGCAGCTTGTAtatgattttcgttatcgaGATGTGAAATGTTTGGACAA ATGTAGAAAAATCGAGAATAATATTGAGTTGTGAGGTTTGGTGGTTGTAA ACTAAAAAGAAATCATGAGAAGTTTCATAGAGGACTTGCAATCGAACAAT TGGTTTTCAATAAAGATTATATTCTTGGCTACCTTAACAGCTATCTCCTC TGGAACTGTTCTATTTATAAACGCATTGGTTGCTCCGGACTTGCAATGTG AATGGGGTTTAACGACATTTGAAGTGACATCTATTTCAATTGCTTTTTAT GCTGGCGAAGCCTTTGGTTCGTGGTATTGGGGCCGAATTGCTGACATTTA TGGACGTAAAAACACGTTAATTGCGTCCACAGGCTCGATGTTATATTTTG TCCTTATATCAGCAGCTAGTCAATCTTTTCATATTTATCTTTTATTGCGA TTCTTTGTTGGTGCTGGATTCGCTGGGTCCTTCCTCTTAACCGTGATATA TAACACGGAGTTCACGAAAAGCACGGATCACGGTAAAGCTGTGTTTTGGT ACAATTTCGTCTACACCTTTGGTAGTTTATTTTCGATTGGTTTCTCTTAT TGGACTTTGAACAATTATGGATGGAGAATCTACACTCTAGCAGTGATATC ACCAACCATAATTTTACTTTATTTCATGATTGCTTATCTTCCTGAGTCGA TACGATTTTTACAAGCTCAAGGGCGCACTTCAGAAGCTCTTGAAGTGATA AAAGATGCCTGTAAAACTACCAAAACTGCTTTAACAAAAGACATGGATTT ATTAAATATGAACTCTAATGCACCTGGCAAAACACAGGATTCGGGCTATA TCCAAGTCCTATCAAAACACTGGATTAAGATTTTCGGGCTTTCGTTTTTC GGTGTACCcatgtttttaagtttttacgGTTTACCGTTTTTCATTGAATA TAAACTTCAGCATGCAAGNATAGCAGTGATATCACCAGCTATAATATTAC TTTATTTCATGATTGCTTATCTTCCTGAATCGATACGATTTTTACAATCT CAAGGACGTACTTCAGAAGCTCTTGAAGTGATAAAAGATGCCTGTAAAAC TACCAAAACTGCTTTGACAAAAGAAATGGATCTATTAAATATGAACTCTG ATGCACCTAGCAAAACAGAGGATTCGGGCTATTTCCAAGTCCTATCAAAA CACTGGATCAATATTTTTGGGCTTTCGTTCTATGGAGTACCcatgttctt aagtttttacGGTTTACCTTTTTTCATTGAATATAAACTTCAGCATGCAA CGTGTACGTTGATTGTAAACGAGACAATTTCCCCAAAATGTGTTCCTCTT ACTAATGGGGAGATCTTACGTTCATTTTTCATTAACCTTGGTTATCTACC TGGCGCATTTATCGGTTATTTTATGGCGGAGAAAATTGGGCGTAAAATAT TACTGAACACTACAACTGGCTTATTAGCTGTTTGTTATATCAGTCAGTTA ATATGCTTACCTAACGCTATCAATTACTTCTTGTTGTTTCTATCATCTGG TATGTCACTTTCAGCTACTTGTTTTATAGTGTTGTACGCGGCGGAATTAT TCCCAACGAATGTTCGAATGACTTCTACAGGTATAGCTGCCTCAGTATGG AAAATCTGCAGCATCTTGTCACCTGTATTGTTTCAACATTTGATTTACAC AAATACGacttttgttattgttttaatgaGTGCTTGGAGCATTGTTGGAG CCCTTGGACTTTGTCCTTTACCAGAAACTCTTGGACATGGCTTGAAGGAA TTTTGACATTAATATTACAGCTATTGACATTACAATCAAGTCAGTTATGT TTTAAATTCGTTAACTGGAAatgttattatttattttttatatttattta gaattttcctCTAGTTAGTTCTAcaataaattgaataaaatttttACGTC CCGAACAATGTTTAtctcgttttcaaaattttgctgtGGTAATTAATGCC CAGAGAAACTTATGAAAATGTTACTCTATTAATAATATTAACACTTTACC ACTCGACGGACATTATCAACCTGGTTATGGCTTGGTAAATGCAACCAAAA TAACTTATAtaattcaaaatatgaaaatttagaaTTATAGAAAACCCATA ATATTGCCATCCGTCAGCCTTTCAGATAGATGAATTTCGGATCAATattt ggagttttttttttttcaaactatttGAATTTCAACACACTAAAAATTCT GTTGCAAAGTACTGCTCGAATTACAAAGGTTCAAGTTATGCTATTTTAGG AAAATGCTATGTTCAGAAAAAACAAACTAGGTGACTGAGATTTTGTCAGA ATTATAGATGTTCAAATCACTGAGAGTTTTAAGTACATTGAATATTATCC CATTGTTGTGAAGATTCGaaacttgaaaatataaaaGCAAAAACCTTCTT CTTCGTTACCAAGAAACTGGATAATGAATGGGCTGTTCGATTTGGAAACA AAAGAACATTCAACAGCAACAGCAACAGCATTCAatttctgtctcaaaat tccTAGCCCTTTTCAAACAGTAGCTATGAGAAATTTCTTGCGAATCTTGA TTAAGAGGTACAGAGAAGGTCGAGCTGACTTTAAAATGTTCGGTAAAATT CGGTAAAATTCTGTCCGAGTATGTACTTATATTagagaatattttcaaaa gtcaaatttaaaactttttatttcatttctatGTTACAGAAAAATTGGTA TTATTGATACGTGAATAAGGAAGGAAGGAGTAATGGAACCCACACCACCA TCGATAATGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000737XLOC_000737Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001389-exon-sc0000010-1491911889:883719..883891TCONS_00001389-exon-sc0000010-1491911889:883719..883891Clytia hemisphaericaexon
TCONS_00001389-exon-sc0000010-1510915933:883719..883891TCONS_00001389-exon-sc0000010-1510915933:883719..883891Clytia hemisphaericaexon
TCONS_00001389-exon-sc0000010-1575043694:883719..883891TCONS_00001389-exon-sc0000010-1575043694:883719..883891Clytia hemisphaericaexon
TCONS_00001389-exon-sc0000010-1491911889:892158..892228TCONS_00001389-exon-sc0000010-1491911889:892158..892228Clytia hemisphaericaexon
TCONS_00001389-exon-sc0000010-1510915933:892158..892228TCONS_00001389-exon-sc0000010-1510915933:892158..892228Clytia hemisphaericaexon
TCONS_00001389-exon-sc0000010-1575043694:892158..892228TCONS_00001389-exon-sc0000010-1575043694:892158..892228Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000010supercontigsc0000010:883719..892228 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
5.79869 4.05462 0 2.80305 0.951408 0.740619 1.5872 1.21566 0.710786 0 10.2547 0.561754 1.68292 0.949246 0.819526 2.05598 2.53279 5.60806 1.79328 0.938269 0 1.19336 2.46476 7.63772 0.711654 0 2.31316 0 0 1.82848
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00001389 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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