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TCONS_00001388 (transcript) - C. hemisphaerica

Overview
NameTCONS_00001388
Unique NameTCONS_00001388
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length883

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00001388 ID=TCONS_00001388|Name=TCONS_00001388|organism=Clytia hemisphaerica|type=transcript|length=883bp
GGTACAAGCCGCTGCAACAAATCCACTGTTCCAAACAGCGTCTGTGCAGA
AAATGAGGGCAAAAAGAGGAGAAAAAAACCTAACCCAAAGTATCAAATAC
CTGCTTACCCGAACTATCAATTACAAGCTAACCGAAAGTATCAAAGAGAA
AGTCGGAAAAGAACGAAAATAAACACTTTGCTTTTACAAAGTGATCGTAT
TCCTTTGCTAAAAAATGCGCCCTACAAACACAAACGCCCTCCTCTTAAAC
CACCCATTTGGGACTCGCCCATTCAGAGATTTCTTCTATTTCACCAGTCA
CAATCTCAGCAGTATTTACTAAACAGATATGGCTCCTTTGTTTATATTAC
TGAAGTTCAACCTAAAAGTATTGGTTATAAAGCAGCAAATGGCGTTGCAT
CATTTTTGATTTGTGTTCGAACAAATGTTGATTGTCAAGTTGTGGGGACA
ATACTTTGTAATAAATATAATGATCACGCCCAAGTCCTTAAAGAAGCATT
GACAGAGTTCAAAGAGATCAACGAATTTTGGAGACCAAAATATCTCATGA
TCGATCCCTCGGATGCAATGGTAAATTCTGTTGGAGAAGTTTTTCCAGGT
ATTTTGTTTTGTaagattgggctattccagaaaaaaattgtaacccCTAC
GTTGAGgagatctttttttttgaaaaggtaaccccctggatttttttcca
atttttcaggaccctcttggattttttccccatttctttggaccaccctg
gatttttgatCTCGTTATactaaccaccctggatttttttattttccaga
ccacccagggggtacagactatttctggaaaagcccattatatGTAGTTT
TAGAcagtttgtttaaaaaattgatgTCGGGat
Run BLAST on NCBI

transcript from alignment at sc0000010:874976..875858+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00001388 ID=TCONS_00001388|Name=TCONS_00001388|organism=Clytia hemisphaerica|type=transcript|length=883bp|location=Sequence derived from alignment at sc0000010:874976..875858+ (Clytia hemisphaerica)
GGTACAAGCCGCTGCAACAAATCCACTGTTCCAAACAGCGTCTGTGCAGA AAATGAGGGCAAAAAGAGGAGAAAAAAACCTAACCCAAAGTATCAAATAC CTGCTTACCCGAACTATCAATTACAAGCTAACCGAAAGTATCAAAGAGAA AGTCGGAAAAGAACGAAAATAAACACTTTGCTTTTACAAAGTGATCGTAT TCCTTTGCTAAAAAATGCGCCCTACAAACACAAACGCCCTCCTCTTAAAC CACCCATTTGGGACTCGCCCATTCAGAGATTTCTTCTATTTCACCAGTCA CAATCTCAGCAGTATTTACTAAACAGATATGGCTCCTTTGTTTATATTAC TGAAGTTCAACCTAAAAGTATTGGTTATAAAGCAGCAAATGGCGTTGCAT CATTTTTGATTTGTGTTCGAACAAATGTTGATTGTCAAGTTGTGGGGACA ATACTTTGTAATAAATATAATGATCACGCCCAAGTCCTTAAAGAAGCATT GACAGAGTTCAAAGAGATCAACGAATTTTGGAGACCAAAATATCTCATGA TCGATCCCTCGGATGCAATGGTAAATTCTGTTGGAGAAGTTTTTCCAGGT ATTTTGTTTTGTaagattgggctattccagaaaaaaattgtaacccCTAC GTTGAGgagatctttttttttgaaaaggtaaccccctggatttttttcca atttttcaggaccctcttggattttttccccatttctttggaccaccctg gatttttgatCTCGTTATactaaccaccctggatttttttattttccaga ccacccagggggtacagactatttctggaaaagcccattatatGTAGTTT TAGAcagtttgtttaaaaaattgatgTCGGGat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000737XLOC_000737Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001388-exon-sc0000010-1491911889:874976..875858TCONS_00001388-exon-sc0000010-1491911889:874976..875858Clytia hemisphaericaexon
TCONS_00001388-exon-sc0000010-1510915933:874976..875858TCONS_00001388-exon-sc0000010-1510915933:874976..875858Clytia hemisphaericaexon
TCONS_00001388-exon-sc0000010-1575043694:874976..875858TCONS_00001388-exon-sc0000010-1575043694:874976..875858Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000010supercontigsc0000010:874976..875858 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.12792 0.669173 0.736524 1.54687 0.559598 0.145631 0.33405 0.957017 0.204466 0.279859 0.349273 0.254049 0.181016 0 0.643204 0.436103 0.462668 0.134241 0.373078 0.460427 0.196015 1.04524 0.973416 0.623009 0.185069 0.520368 0.43767 1.51875 0.609844 0.185923
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00001388 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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