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TCONS_00001378 (transcript) - C. hemisphaerica

Overview
NameTCONS_00001378
Unique NameTCONS_00001378
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length973

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00001378 ID=TCONS_00001378|Name=TCONS_00001378|organism=Clytia hemisphaerica|type=transcript|length=973bp
GAACTTTCGAAAAAAGCATTTTGTTGATAGGAATATTCAGTCAAGAAAAA
AGTCGTCTCTCGTGAAAATGTGGTTTCTTTTTATGTTCATCCCTTATGCA
ATTTGCGCAAGAATTTTTCCAACTCAAACTGCAATATCAACGAATGAAAA
CAGCAATATTACATTAGAATGGTCTTTGAAACCAATGCATGGAGAAATTG
CAGACTGGATATCCATTTTCCATCAATCTGATGAAAATTCTCTCATTCGA
CCGTTATGGCACGATTCTACTGGTTTGAcaaaatttggggaaaagaaatt
tcaagattCCTTTCGAGTAAATTACGCCAAGAATTTGAAGAAAGTTTCCG
CAATAAtaacaaacataaaagactCAATGATTGTTTATTTGACGGCTGTT
TTCATGGATAAAAACGGGCAAATTGTCAGTGGACCTATTTATTCCAAGTT
TAAAATTCGAGttGGTTACATTCAATTGACAGACAAACCAATTTGTTATG
GAGCACGAGACAAAACACCAGCTTCCTTTTCACTTCCTCTTGATGGTAAT
CTCAAAGCAATCAAGCTACGACACATCTCTGGCAGTGTACATTGTAGTGT
TAGGAGAATGAAGAACTATTGGGGCTGTAGAGCGTGCTGCAAGGGCACTT
TGATGACTATAATCACAAATTCCCTAGACAAAGCTATTATTCCATTAACA
GGAACCCACCCAAATTATCTAGATACTATCAGTCCAAATTATGGTGGGGT
CCTTGCTCCTGAATTAGTTCTCCCGGTACCCGTTGCTTCTAGGAGAGTCA
TCAAGGGCACATTGATGAAAATTTGGCATACAGAAGATTTATTCTTATCA
GGTGCAGGAGTGAATGACAATAGTGGCACTCACTGTGTTTTAGTTTTTGC
TATGTATTCGTAAAAACATTGTTTCAattaagtttgtttttttgttctcA
AAGGCATTTTCTTTGAGTTTAAA
Run BLAST on NCBI

protein sequence of TCONS_00001378-protein

>TCONS_00001378-protein ID=TCONS_00001378-protein|Name=TCONS_00001378-protein|organism=Clytia hemisphaerica|type=polypeptide|length=303bp
NFRKKHFVDRNIQSRKKSSLVKMWFLFMFIPYAICARIFPTQTAISTNEN
SNITLEWSLKPMHGEIADWISIFHQSDENSLIRPLWHDSTGLTKFGEKKF
QDSFRVNYAKNLKKVSAIITNIKDSMIVYLTAVFMDKNGQIVSGPIYSKF
KIRVGYIQLTDKPICYGARDKTPASFSLPLDGNLKAIKLRHISGSVHCSV
RRMKNYWGCRACCKGTLMTIITNSLDKAIIPLTGTHPNYLDTISPNYGGV
LAPELVLPVPVASRRVIKGTLMKIWHTEDLFLSGAGVNDNSGTHCVLVFA
MYS
Run BLAST on NCBI

transcript from alignment at sc0000010:730985..733128+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00001378 ID=TCONS_00001378|Name=TCONS_00001378|organism=Clytia hemisphaerica|type=transcript|length=2144bp|location=Sequence derived from alignment at sc0000010:730985..733128+ (Clytia hemisphaerica)
GAACTTTCGAAAAAAGCATTTTGTTGATAGGAATATTCAGTCAAGAAAAA AGTCGTCTCTCGTGAAAATGTGGTTTCTTTTTATGTTCATCCCTTATGGT GAGTTTACATAAactaatacacccctgtgtcacagacccgcggGGACCCA AGCCTCACTGGAAAATAGGGGAAATATTTCGTATCCGTTGAGACCTATGG GAAAATACCCTCAAATTTTAGCCCCCCTggaaaatcgattttgatttcat cACCATTCGAAAATTaatgtttagaaattgcacACTAAAtctatccccat tggattttctaaccttggaacaatagaatttctaaccccatcgggatttc aataggagtttttatccccactgagaaaaaaagttccaccagagctaaga gacaggggtgtactaaTGAtgtagtctgaatcacagacctctatagatat acttcctgtATAGAAACTTTATTGCTAGAGGATATAGCAGAAGCCTACTA ATAATGATGTTAGTCATGAAAGAGCTTTTCAGAATAAGAATAGGACAAAA AGTAGTTCGGAAAGTTCCAGTAATGTGGTCTGGATAAGAGGTTTGGTTCT TAGTTTACCATCATCGAATGGCGCTATAGGACTATAGTATATCGAAATTA TTAATTGGCATTCAGGACCACAACACTCTGATAACAGATTTCTGTTTGTA TAAAAGTTTGGAGAGTTAAAAATCCAAACTGAAGCAGAGATGGAAGGAGT ATTAAAATGTAGAGAGGTTTTGGAGTAGGAGCTAGGAGATATTGCTGCAC GGCTTTTGTTGAAGAAGagttttttttctctcctttttcTAGCAATTTGC GCAAGAATTTTTCCAACTCAAACTGCAATATCAACGAATGAAAACAGCAA TATTACATTAGAATGGTCTTTGAAACCAATGCATGGAGAAATTGCAGACT GGATATCCATTTTCCATCAATCTGATGAAAATTCTCTCATTCGACCGTTA TGGCACGATTCTACTGGTTTGAcaaaatttggggaaaagaaatttcaaga ttCCTTTCGAGTAAATTACGCCAAGAATTTGAAGAAAGTTTCCGCAATAA taacaaacataaaagactCAATGATTGTTTATTTGACGGCTGTTTTCATG GATAAAAACGGGCAAATTGTCAGTGGACCTATTTATTCCAAGTTTAAAAT TCGAGGTAAATTGTTAACTTGGatatttagaccatgttcaaNAAGTTTAA AATTCGAGGTAATTCAAAATTCCATATTTAATCAATTGAGCTCAGAATCC TTAttcgtgatatgcaccattgtacggacccaacagctgattggttgtaa gtgacgtaaaatcagtcaagagTCCCCTCAAGACGGCCCTGCAAACCAAT CGGCTGTTTGGTACGTGATGTAATgttggaagacattgcaacggtGCATA ACATGATTTCGAAACTCGGTGAAAGTCTCATCAAGAAGTCAAGATCTGAC ATCAAGATCTGACATGAGAGTTCtagagtaaaaaaattaaaaccaagATT TGGTCTATATTTGTCTATATTCTTTCCCCACTCGCTTAGATTATCATAAG CTAATTTGTtgtgtttattttcattttcatagttGGTTACATTCAATTGA CAGACAAACCAATTTGTTATGGAGCACGAGACAAAACACCAGCTTCCTTT TCACTTCCTCTTGATGGTAATCTCAAAGCAATCAAGCTACGACACATCTC TGGCAGTGTACATTGTAGTGTTAGGAGAATGAAGAACTATTGGGGCTGTA GAGCGTGCTGCAAGGGCACTTTGATGACTATAATCACAAATTCCCTAGAC AAAGCTATTATTCCATTAACAGGAACCCACCCAAATTATCTAGATACTAT CAGTCCAAATTATGGTGGGGTCCTTGCTCCTGAATTAGTTCTCCCGGTAC CCGTTGCTTCTAGGAGAGTCATCAAGGGCACATTGATGAAAATTTGGCAT ACAGAAGATTTATTCTTATCAGGTGCAGGAGTGAATGACAATAGTGGCAC TCACTGTGTTTTAGTTTTTGCTATGTATTCGTAAAAACATTGTTTCAatt aagtttgtttttttgttctcAAAGGCATTTTCTTTGAGTTTAAA

Coding sequence (CDS) from alignment at sc0000010:730985..733128+

>TCONS_00001378 ID=TCONS_00001378|Name=TCONS_00001378|organism=Clytia hemisphaerica|type=CDS|length=2736bp|location=Sequence derived from alignment at sc0000010:730985..733128+ (Clytia hemisphaerica)
AACTTTCGAAAAAAGCATTTTGTTGATAGGAATATTCAGTCAAGAAAAAA
GTCGTCTCTCGTGAAAATGTGGTTTCTTTTTATGTTCATCCCTTATGCAA
TTTGCGCAAGAATTTTTCCAACTCAAACTGCAATATCAACGAATGAAAAC
AGCAATATTACATTAGAATGGTCTTTGAAACCAATGCATGGAGAAATTGC
AGACTGGATATCCATTTTCCATCAATCTGATGAAAATTCTCTCATTCGAC
CGTTATGGCACGATTCTACTGGTTTGAcaaaatttggggaaaagaaattt
caagattCCTTTCGAGTAAATTACGCCAAGAATTTGAAGAAAGTTTCCGC
AATAAtaacaaacataaaagactCAATGATTGTTTATTTGACGGCTGTTT
TCATGGATAAAAACGGGCAAATTGTCAGTGGACCTATTTATTCCAAGTTT
AAAATTCGAGttGGTTACATTCAATTGACAGACAAACCAATTTGTTATGG
AGCACGAGACAAAACACCAGCTTCCTTTTCACTTCCTCTTGATGGTAATC
TCAAAGCAATCAAGCTACGACACATCTCTGGCAGTGTACATTGTAGTGTT
AGGAGAATGAAGAACTATTGGGGCTGTAGAGCGTGCTGCAAGGGCACTTT
GATGACTATAATCACAAATTCCCTAGACAAAGCTATTATTCCATTAACAG
GAACCCACCCAAATTATCTAGATACTATCAGTCCAAATTATGGTGGGGTC
CTTGCTCCTGAATTAGTTCTCCCGGTACCCGTTGCTTCTAGGAGAGTCAT
CAAGGGCACATTGATGAAAATTTGGCATACAGAAGATTTATTCTTATCAG
GTGCAGGAGTGAATGACAATAGTGGCACTCACTGTGTTTTAGTTTTTGCT
ATGTATTCGTAAAACTTTCGAAAAAAGCATTTTGTTGATAGGAATATTCA
GTCAAGAAAAAAGTCGTCTCTCGTGAAAATGTGGTTTCTTTTTATGTTCA
TCCCTTATGCAATTTGCGCAAGAATTTTTCCAACTCAAACTGCAATATCA
ACGAATGAAAACAGCAATATTACATTAGAATGGTCTTTGAAACCAATGCA
TGGAGAAATTGCAGACTGGATATCCATTTTCCATCAATCTGATGAAAATT
CTCTCATTCGACCGTTATGGCACGATTCTACTGGTTTGAcaaaatttggg
gaaaagaaatttcaagattCCTTTCGAGTAAATTACGCCAAGAATTTGAA
GAAAGTTTCCGCAATAAtaacaaacataaaagactCAATGATTGTTTATT
TGACGGCTGTTTTCATGGATAAAAACGGGCAAATTGTCAGTGGACCTATT
TATTCCAAGTTTAAAATTCGAGttGGTTACATTCAATTGACAGACAAACC
AATTTGTTATGGAGCACGAGACAAAACACCAGCTTCCTTTTCACTTCCTC
TTGATGGTAATCTCAAAGCAATCAAGCTACGACACATCTCTGGCAGTGTA
CATTGTAGTGTTAGGAGAATGAAGAACTATTGGGGCTGTAGAGCGTGCTG
CAAGGGCACTTTGATGACTATAATCACAAATTCCCTAGACAAAGCTATTA
TTCCATTAACAGGAACCCACCCAAATTATCTAGATACTATCAGTCCAAAT
TATGGTGGGGTCCTTGCTCCTGAATTAGTTCTCCCGGTACCCGTTGCTTC
TAGGAGAGTCATCAAGGGCACATTGATGAAAATTTGGCATACAGAAGATT
TATTCTTATCAGGTGCAGGAGTGAATGACAATAGTGGCACTCACTGTGTT
TTAGTTTTTGCTATGTATTCGTAAAACTTTCGAAAAAAGCATTTTGTTGA
TAGGAATATTCAGTCAAGAAAAAAGTCGTCTCTCGTGAAAATGTGGTTTC
TTTTTATGTTCATCCCTTATGCAATTTGCGCAAGAATTTTTCCAACTCAA
ACTGCAATATCAACGAATGAAAACAGCAATATTACATTAGAATGGTCTTT
GAAACCAATGCATGGAGAAATTGCAGACTGGATATCCATTTTCCATCAAT
CTGATGAAAATTCTCTCATTCGACCGTTATGGCACGATTCTACTGGTTTG
AcaaaatttggggaaaagaaatttcaagattCCTTTCGAGTAAATTACGC
CAAGAATTTGAAGAAAGTTTCCGCAATAAtaacaaacataaaagactCAA
TGATTGTTTATTTGACGGCTGTTTTCATGGATAAAAACGGGCAAATTGTC
AGTGGACCTATTTATTCCAAGTTTAAAATTCGAGttGGTTACATTCAATT
GACAGACAAACCAATTTGTTATGGAGCACGAGACAAAACACCAGCTTCCT
TTTCACTTCCTCTTGATGGTAATCTCAAAGCAATCAAGCTACGACACATC
TCTGGCAGTGTACATTGTAGTGTTAGGAGAATGAAGAACTATTGGGGCTG
TAGAGCGTGCTGCAAGGGCACTTTGATGACTATAATCACAAATTCCCTAG
ACAAAGCTATTATTCCATTAACAGGAACCCACCCAAATTATCTAGATACT
ATCAGTCCAAATTATGGTGGGGTCCTTGCTCCTGAATTAGTTCTCCCGGT
ACCCGTTGCTTCTAGGAGAGTCATCAAGGGCACATTGATGAAAATTTGGC
ATACAGAAGATTTATTCTTATCAGGTGCAGGAGTGAATGACAATAGTGGC
ACTCACTGTGTTTTAGTTTTTGCTATGTATTCGTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000734XLOC_000734Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001378-proteinTCONS_00001378-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001378-exon-sc0000010-1491911889:730985..731082TCONS_00001378-exon-sc0000010-1491911889:730985..731082Clytia hemisphaericaexon
TCONS_00001378-exon-sc0000010-1510915933:730985..731082TCONS_00001378-exon-sc0000010-1510915933:730985..731082Clytia hemisphaericaexon
TCONS_00001378-exon-sc0000010-1575043694:730985..731082TCONS_00001378-exon-sc0000010-1575043694:730985..731082Clytia hemisphaericaexon
TCONS_00001378-exon-sc0000010-1491911889:731827..732189TCONS_00001378-exon-sc0000010-1491911889:731827..732189Clytia hemisphaericaexon
TCONS_00001378-exon-sc0000010-1510915933:731827..732189TCONS_00001378-exon-sc0000010-1510915933:731827..732189Clytia hemisphaericaexon
TCONS_00001378-exon-sc0000010-1575043694:731827..732189TCONS_00001378-exon-sc0000010-1575043694:731827..732189Clytia hemisphaericaexon
TCONS_00001378-exon-sc0000010-1491911889:732617..733128TCONS_00001378-exon-sc0000010-1491911889:732617..733128Clytia hemisphaericaexon
TCONS_00001378-exon-sc0000010-1510915933:732617..733128TCONS_00001378-exon-sc0000010-1510915933:732617..733128Clytia hemisphaericaexon
TCONS_00001378-exon-sc0000010-1575043694:732617..733128TCONS_00001378-exon-sc0000010-1575043694:732617..733128Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000010supercontigsc0000010:730985..733128 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.326604 0 0 0.317992 0.54475 0 0.290604 0.317648 0.316197 0 0.819489 0.175862 2.95278 2.24353 6.84941 6.6415 2.41665 2.36708 2.30996 1.89078 2.25123 2.60273 3.70708 3.42248 2.41088 3.23934 1.14908 1.40562 6.80944 6.58347
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00001378 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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