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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00001371 ID=TCONS_00001371|Name=TCONS_00001371|organism=Clytia hemisphaerica|type=transcript|length=942bp
CCTTgcttttaaacctaaaaattgtAGATATACTCCTGTTATTTTTTACT
TATAGAGTTCTAGATAAAAAGTATTAATGTTAAAATCTAATGGGAAATAC
CTCTTCGGAAAATACATGCACTGAGCTCTCAGTTTTATCCTGGAATATTT
GGTTCGGTACAAGCCAGAAGCTTGACCAGCCAGAGCAAAGATGGACAGAA
TTACTCAACATTGTTGTCAATAAGAACCCTGACTTAATTGGTCTTCAGGA
ATGCACTTTAGATTTCttaaaagttgtcaaaaaacATTCCAGATTCTCTG
ATCATTACGTTGTTGTCAATGAGAGACCTTTATATTCCAACTATTTTGTT
ATgctttacaaaaagaaagatttgaaaatcttAAAGAAAGGGACAATCAA
ATTGAAAACGACTTTGGAAAGACAATGTGAATATATGGATGTCGAAAAAG
AAGGAGCTAAATTTCGTTTTGGTACTGTTCATATCGAGTCCTATGTCACA
TCACCAAATATCAGGGAAATTCAAATGGGAGCCATATTTGATgttttaca
aaagaaaactaAGGACATAGAGCTTGCCTTTTTGGTTGGTGATTTCAATT
TCCATGAAACAGACGAAGAAAATAAGTTTATAGAGAGTAGTCAATTTAAG
GATACATGGCGGGTTGTCCATGAAGATCTAGATGGTTTCACCAAAGATTC
TGATCATAATGTTATGAACCAAATGTTCCATGGGAAGCCTATtacacaga
aaaagaaaaggattGATCGAATTTTGTATATGGAGGACACCAATGATGTG
AATCATTGGAAGGCAACTCAATGCCAAGTTATTGGGGATGAGATATTTGA
TGAGATCGTCATGCACGATCAAACCAAAGTTTCCATGTTTCCTTCTGACC
ATTATGGTTTACTTGCtaagtttgaaaaaaacttaAGTTAGG Run BLAST on NCBI protein sequence of TCONS_00001371-protein >TCONS_00001371-protein ID=TCONS_00001371-protein|Name=TCONS_00001371-protein|organism=Clytia hemisphaerica|type=polypeptide|length=283bp
MGNTSSENTCTELSVLSWNIWFGTSQKLDQPEQRWTELLNIVVNKNPDLI
GLQECTLDFLKVVKKHSRFSDHYVVVNERPLYSNYFVMLYKKKDLKILKK
GTIKLKTTLERQCEYMDVEKEGAKFRFGTVHIESYVTSPNIREIQMGAIF
DVLQKKTKDIELAFLVGDFNFHETDEENKFIESSQFKDTWRVVHEDLDGF
TKDSDHNVMNQMFHGKPITQKKKRIDRILYMEDTNDVNHWKATQCQVIGD
EIFDEIVMHDQTKVSMFPSDHYGLLAKFEKNLS Run BLAST on NCBI transcript from alignment at sc0000010:697409..699148+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00001371 ID=TCONS_00001371|Name=TCONS_00001371|organism=Clytia hemisphaerica|type=transcript|length=1740bp|location=Sequence derived from alignment at sc0000010:697409..699148+ (Clytia hemisphaerica)
CCTTgcttttaaacctaaaaattgtAGATATACTCCTGTTATTTTTTACT
TATAGAGTTCTAGATAAAAAGTATTAATGTTAAAATCTAATGGGAAATAC
CTCTTCGGAAAATACATGCACTGAGCTCTCAGTTTTATCCTGGAATATTT
GGTTCGGTACAAGCCAGAAGCTTGACCAGCCAGAGCAAAGATGGACAGAA
TTACTCAACATTGTTGTCAATAAGAACCCTGACTTAATTGGTCTTCAGGA
ATGCACTTTAGATTTCttaaaagttgtcaaaaaacATTCCAGATTCTCTG
ATCATTACGTTGTTGTCAATGAGAGACCTTTATATTCCAACTATTTTGTT
ATgctttacaaaaagaaagatttgaaaatcttAAAGAAAGGGACAATCAA
ATTGAAAACGACTTTGGAAAGACAATGTGAATATATGGATGTCGAAAAAG
AAGGAGCTAAATTTCGTTTTGGTACTGTTCATATCGAGTCCTATGTCACA
TCACCAAATATCAGGGAAATTCAAATGGAAGCCATATTtgatattttaca
aaagaaaaNATGTCAATCATCTGAAATTTTTACATTGATTTTATTACaga
tagaaatattttgaaaacatttttttttaataaactaaAATAAATGATTG
AAAGGATGTCACAGGGCCTTGGCTCATTATTTCGGTAAACTTGATCCAAA
CCCTTTGTGGTGTTAAGGGCTCATAGTTATTTCTAGAATTTTGGTTTGGT
TTTCTTCTAgtgaatttttgtttacataaaTGGAATCTTTCTTTGGAACC
TTgcttttaaacctaaaaattgtAGATATACTCCTGTTATTTTTTACTTA
TAGAGTTACAGATAAAAAGTATTAATGTTAAAATCTAATGGGAAATACCT
CTTCGGAAAATACATGCACTGAGCTCTCAGTTTTATCCTGGAATATTTGG
TTCGGTACAAGCCAGAAGCTTGACCAGCCAGAGCAAAGATGGACAGAATT
ACTCAACATTGTTGTCAATAAGAACCCTGACTTAATTGGTCTTCAGGAAT
GCACTTTAGATTTCttaaaagttgtcaaaaaacATTCCAGATTCTCTGAT
CATTACGTTGTTGTCAATGAGAGACCTTTATATTCCAACTATTTTGTTAT
gctttacaaaaagaaagatttgaaaatcttAAAGAAAGGGACAATCAAAT
TGAAAACGACTTTGGAAAGACAATGTGAATATTTGGATGTCGAAAAAGAA
GGAGCTAAATTTCGGTTTGGTACTGTTCATATCGAGTCCTATATCACATC
ACCAAATATCAGGGAAATTCAAATGGGAGCCATATTTGATgttttacaaa
agaaaactaAGGACATAGAGCTTGCCTTTTTGGTTGGTGATTTCAATTTC
CATGAAACAGACGAAGAAAATAAGTTTATAGAGAGTAGTCAATTTAAGGA
TACATGGCGGGTTGTCCATGAAGATCTAGATGGTTTCACCAAAGATTCTG
ATCATAATGTTATGAACCAAATGTTCCATGGGAAGCCTATtacacagaaa
aagaaaaggattGATCGAATTTTGTATATGGAGGACACCAATGATGTGAA
TCATTGGAAGGCAACTCAATGCCAAGTTATTGGGGATGAGATATTTGATG
AGATCGTCATGCACGATCAAACCAAAGTTTCCATGTTTCCTTCTGACCAT
TATGGTTTACTTGCtaagtttgaaaaaaacttaAGTTAGG Coding sequence (CDS) from alignment at sc0000010:697409..699148+ >TCONS_00001371 ID=TCONS_00001371|Name=TCONS_00001371|organism=Clytia hemisphaerica|type=CDS|length=1704bp|location=Sequence derived from alignment at sc0000010:697409..699148+ (Clytia hemisphaerica)
ATGGGAAATACCTCTTCGGAAAATACATGCACTGAGCTCTCAGTTTTATC
CTGGAATATTTGGTTCGGTACAAGCCAGAAGCTTGACCAGCCAGAGCAAA
GATGGACAGAATTACTCAACATTGTTGTCAATAAGAACCCTGACTTAATT
GGTCTTCAGGAATGCACTTTAGATTTCttaaaagttgtcaaaaaacATTC
CAGATTCTCTGATCATTACGTTGTTGTCAATGAGAGACCTTTATATTCCA
ACTATTTTGTTATgctttacaaaaagaaagatttgaaaatcttAAAGAAA
GGGACAATCAAATTGAAAACGACTTTGGAAAGACAATGTGAATATATGGA
TGTCGAAAAAGAAGGAGCTAAATTTCGTTTTGGTACTGTTCATATCGAGT
CCTATGTCACATCACCAAATATCAGGGAAATTCAAATGGGAGCCATATTT
GATgttttacaaaagaaaactaAGGACATAGAGCTTGCCTTTTTGGTTGG
TGATTTCAATTTCCATGAAACAGACGAAGAAAATAAGTTTATAGAGAGTA
GTCAATTTAAGGATACATGGCGGGTTGTCCATGAAGATCTAGATGGTTTC
ACCAAAGATTCTGATCATAATGTTATGAACCAAATGTTCCATGGGAAGCC
TATtacacagaaaaagaaaaggattGATCGAATTTTGTATATGGAGGACA
CCAATGATGTGAATCATTGGAAGGCAACTCAATGCCAAGTTATTGGGGAT
GAGATATTTGATGAGATCGTCATGCACGATCAAACCAAAGTTTCCATGTT
TCCTTCTGACCATTATGGTTTACTTGCtaagtttgaaaaaaacttaAGTT
AGATGGGAAATACCTCTTCGGAAAATACATGCACTGAGCTCTCAGTTTTA
TCCTGGAATATTTGGTTCGGTACAAGCCAGAAGCTTGACCAGCCAGAGCA
AAGATGGACAGAATTACTCAACATTGTTGTCAATAAGAACCCTGACTTAA
TTGGTCTTCAGGAATGCACTTTAGATTTCttaaaagttgtcaaaaaacAT
TCCAGATTCTCTGATCATTACGTTGTTGTCAATGAGAGACCTTTATATTC
CAACTATTTTGTTATgctttacaaaaagaaagatttgaaaatcttAAAGA
AAGGGACAATCAAATTGAAAACGACTTTGGAAAGACAATGTGAATATATG
GATGTCGAAAAAGAAGGAGCTAAATTTCGTTTTGGTACTGTTCATATCGA
GTCCTATGTCACATCACCAAATATCAGGGAAATTCAAATGGGAGCCATAT
TTGATgttttacaaaagaaaactaAGGACATAGAGCTTGCCTTTTTGGTT
GGTGATTTCAATTTCCATGAAACAGACGAAGAAAATAAGTTTATAGAGAG
TAGTCAATTTAAGGATACATGGCGGGTTGTCCATGAAGATCTAGATGGTT
TCACCAAAGATTCTGATCATAATGTTATGAACCAAATGTTCCATGGGAAG
CCTATtacacagaaaaagaaaaggattGATCGAATTTTGTATATGGAGGA
CACCAATGATGTGAATCATTGGAAGGCAACTCAATGCCAAGTTATTGGGG
ATGAGATATTTGATGAGATCGTCATGCACGATCAAACCAAAGTTTCCATG
TTTCCTTCTGACCATTATGGTTTACTTGCtaagtttgaaaaaaacttaAG
TTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00001371-exon-sc0000010-1491911889:697409..697907 | TCONS_00001371-exon-sc0000010-1491911889:697409..697907 | Clytia hemisphaerica | exon |
| TCONS_00001371-exon-sc0000010-1510915933:697409..697907 | TCONS_00001371-exon-sc0000010-1510915933:697409..697907 | Clytia hemisphaerica | exon |
| TCONS_00001371-exon-sc0000010-1575043694:697409..697907 | TCONS_00001371-exon-sc0000010-1575043694:697409..697907 | Clytia hemisphaerica | exon |
| TCONS_00001371-exon-sc0000010-1491911889:698706..699148 | TCONS_00001371-exon-sc0000010-1491911889:698706..699148 | Clytia hemisphaerica | exon |
| TCONS_00001371-exon-sc0000010-1510915933:698706..699148 | TCONS_00001371-exon-sc0000010-1510915933:698706..699148 | Clytia hemisphaerica | exon |
| TCONS_00001371-exon-sc0000010-1575043694:698706..699148 | TCONS_00001371-exon-sc0000010-1575043694:698706..699148 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000010 | supercontig | sc0000010:697409..699148 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR005135 | Endo/exonuclease/phosphatase |
Blast
The following BLAST results are available for this feature:
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