TCONS_00001371 (transcript) - C. hemisphaerica

Overview
NameTCONS_00001371
Unique NameTCONS_00001371
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length942

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00001371 ID=TCONS_00001371|Name=TCONS_00001371|organism=Clytia hemisphaerica|type=transcript|length=942bp
CCTTgcttttaaacctaaaaattgtAGATATACTCCTGTTATTTTTTACT
TATAGAGTTCTAGATAAAAAGTATTAATGTTAAAATCTAATGGGAAATAC
CTCTTCGGAAAATACATGCACTGAGCTCTCAGTTTTATCCTGGAATATTT
GGTTCGGTACAAGCCAGAAGCTTGACCAGCCAGAGCAAAGATGGACAGAA
TTACTCAACATTGTTGTCAATAAGAACCCTGACTTAATTGGTCTTCAGGA
ATGCACTTTAGATTTCttaaaagttgtcaaaaaacATTCCAGATTCTCTG
ATCATTACGTTGTTGTCAATGAGAGACCTTTATATTCCAACTATTTTGTT
ATgctttacaaaaagaaagatttgaaaatcttAAAGAAAGGGACAATCAA
ATTGAAAACGACTTTGGAAAGACAATGTGAATATATGGATGTCGAAAAAG
AAGGAGCTAAATTTCGTTTTGGTACTGTTCATATCGAGTCCTATGTCACA
TCACCAAATATCAGGGAAATTCAAATGGGAGCCATATTTGATgttttaca
aaagaaaactaAGGACATAGAGCTTGCCTTTTTGGTTGGTGATTTCAATT
TCCATGAAACAGACGAAGAAAATAAGTTTATAGAGAGTAGTCAATTTAAG
GATACATGGCGGGTTGTCCATGAAGATCTAGATGGTTTCACCAAAGATTC
TGATCATAATGTTATGAACCAAATGTTCCATGGGAAGCCTATtacacaga
aaaagaaaaggattGATCGAATTTTGTATATGGAGGACACCAATGATGTG
AATCATTGGAAGGCAACTCAATGCCAAGTTATTGGGGATGAGATATTTGA
TGAGATCGTCATGCACGATCAAACCAAAGTTTCCATGTTTCCTTCTGACC
ATTATGGTTTACTTGCtaagtttgaaaaaaacttaAGTTAGG
Run BLAST on NCBI

protein sequence of TCONS_00001371-protein

>TCONS_00001371-protein ID=TCONS_00001371-protein|Name=TCONS_00001371-protein|organism=Clytia hemisphaerica|type=polypeptide|length=283bp
MGNTSSENTCTELSVLSWNIWFGTSQKLDQPEQRWTELLNIVVNKNPDLI
GLQECTLDFLKVVKKHSRFSDHYVVVNERPLYSNYFVMLYKKKDLKILKK
GTIKLKTTLERQCEYMDVEKEGAKFRFGTVHIESYVTSPNIREIQMGAIF
DVLQKKTKDIELAFLVGDFNFHETDEENKFIESSQFKDTWRVVHEDLDGF
TKDSDHNVMNQMFHGKPITQKKKRIDRILYMEDTNDVNHWKATQCQVIGD
EIFDEIVMHDQTKVSMFPSDHYGLLAKFEKNLS
Run BLAST on NCBI

transcript from alignment at sc0000010:697409..699148+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00001371 ID=TCONS_00001371|Name=TCONS_00001371|organism=Clytia hemisphaerica|type=transcript|length=1740bp|location=Sequence derived from alignment at sc0000010:697409..699148+ (Clytia hemisphaerica)
CCTTgcttttaaacctaaaaattgtAGATATACTCCTGTTATTTTTTACT TATAGAGTTCTAGATAAAAAGTATTAATGTTAAAATCTAATGGGAAATAC CTCTTCGGAAAATACATGCACTGAGCTCTCAGTTTTATCCTGGAATATTT GGTTCGGTACAAGCCAGAAGCTTGACCAGCCAGAGCAAAGATGGACAGAA TTACTCAACATTGTTGTCAATAAGAACCCTGACTTAATTGGTCTTCAGGA ATGCACTTTAGATTTCttaaaagttgtcaaaaaacATTCCAGATTCTCTG ATCATTACGTTGTTGTCAATGAGAGACCTTTATATTCCAACTATTTTGTT ATgctttacaaaaagaaagatttgaaaatcttAAAGAAAGGGACAATCAA ATTGAAAACGACTTTGGAAAGACAATGTGAATATATGGATGTCGAAAAAG AAGGAGCTAAATTTCGTTTTGGTACTGTTCATATCGAGTCCTATGTCACA TCACCAAATATCAGGGAAATTCAAATGGAAGCCATATTtgatattttaca aaagaaaaNATGTCAATCATCTGAAATTTTTACATTGATTTTATTACaga tagaaatattttgaaaacatttttttttaataaactaaAATAAATGATTG AAAGGATGTCACAGGGCCTTGGCTCATTATTTCGGTAAACTTGATCCAAA CCCTTTGTGGTGTTAAGGGCTCATAGTTATTTCTAGAATTTTGGTTTGGT TTTCTTCTAgtgaatttttgtttacataaaTGGAATCTTTCTTTGGAACC TTgcttttaaacctaaaaattgtAGATATACTCCTGTTATTTTTTACTTA TAGAGTTACAGATAAAAAGTATTAATGTTAAAATCTAATGGGAAATACCT CTTCGGAAAATACATGCACTGAGCTCTCAGTTTTATCCTGGAATATTTGG TTCGGTACAAGCCAGAAGCTTGACCAGCCAGAGCAAAGATGGACAGAATT ACTCAACATTGTTGTCAATAAGAACCCTGACTTAATTGGTCTTCAGGAAT GCACTTTAGATTTCttaaaagttgtcaaaaaacATTCCAGATTCTCTGAT CATTACGTTGTTGTCAATGAGAGACCTTTATATTCCAACTATTTTGTTAT gctttacaaaaagaaagatttgaaaatcttAAAGAAAGGGACAATCAAAT TGAAAACGACTTTGGAAAGACAATGTGAATATTTGGATGTCGAAAAAGAA GGAGCTAAATTTCGGTTTGGTACTGTTCATATCGAGTCCTATATCACATC ACCAAATATCAGGGAAATTCAAATGGGAGCCATATTTGATgttttacaaa agaaaactaAGGACATAGAGCTTGCCTTTTTGGTTGGTGATTTCAATTTC CATGAAACAGACGAAGAAAATAAGTTTATAGAGAGTAGTCAATTTAAGGA TACATGGCGGGTTGTCCATGAAGATCTAGATGGTTTCACCAAAGATTCTG ATCATAATGTTATGAACCAAATGTTCCATGGGAAGCCTATtacacagaaa aagaaaaggattGATCGAATTTTGTATATGGAGGACACCAATGATGTGAA TCATTGGAAGGCAACTCAATGCCAAGTTATTGGGGATGAGATATTTGATG AGATCGTCATGCACGATCAAACCAAAGTTTCCATGTTTCCTTCTGACCAT TATGGTTTACTTGCtaagtttgaaaaaaacttaAGTTAGG

Coding sequence (CDS) from alignment at sc0000010:697409..699148+

>TCONS_00001371 ID=TCONS_00001371|Name=TCONS_00001371|organism=Clytia hemisphaerica|type=CDS|length=1704bp|location=Sequence derived from alignment at sc0000010:697409..699148+ (Clytia hemisphaerica)
ATGGGAAATACCTCTTCGGAAAATACATGCACTGAGCTCTCAGTTTTATC
CTGGAATATTTGGTTCGGTACAAGCCAGAAGCTTGACCAGCCAGAGCAAA
GATGGACAGAATTACTCAACATTGTTGTCAATAAGAACCCTGACTTAATT
GGTCTTCAGGAATGCACTTTAGATTTCttaaaagttgtcaaaaaacATTC
CAGATTCTCTGATCATTACGTTGTTGTCAATGAGAGACCTTTATATTCCA
ACTATTTTGTTATgctttacaaaaagaaagatttgaaaatcttAAAGAAA
GGGACAATCAAATTGAAAACGACTTTGGAAAGACAATGTGAATATATGGA
TGTCGAAAAAGAAGGAGCTAAATTTCGTTTTGGTACTGTTCATATCGAGT
CCTATGTCACATCACCAAATATCAGGGAAATTCAAATGGGAGCCATATTT
GATgttttacaaaagaaaactaAGGACATAGAGCTTGCCTTTTTGGTTGG
TGATTTCAATTTCCATGAAACAGACGAAGAAAATAAGTTTATAGAGAGTA
GTCAATTTAAGGATACATGGCGGGTTGTCCATGAAGATCTAGATGGTTTC
ACCAAAGATTCTGATCATAATGTTATGAACCAAATGTTCCATGGGAAGCC
TATtacacagaaaaagaaaaggattGATCGAATTTTGTATATGGAGGACA
CCAATGATGTGAATCATTGGAAGGCAACTCAATGCCAAGTTATTGGGGAT
GAGATATTTGATGAGATCGTCATGCACGATCAAACCAAAGTTTCCATGTT
TCCTTCTGACCATTATGGTTTACTTGCtaagtttgaaaaaaacttaAGTT
AGATGGGAAATACCTCTTCGGAAAATACATGCACTGAGCTCTCAGTTTTA
TCCTGGAATATTTGGTTCGGTACAAGCCAGAAGCTTGACCAGCCAGAGCA
AAGATGGACAGAATTACTCAACATTGTTGTCAATAAGAACCCTGACTTAA
TTGGTCTTCAGGAATGCACTTTAGATTTCttaaaagttgtcaaaaaacAT
TCCAGATTCTCTGATCATTACGTTGTTGTCAATGAGAGACCTTTATATTC
CAACTATTTTGTTATgctttacaaaaagaaagatttgaaaatcttAAAGA
AAGGGACAATCAAATTGAAAACGACTTTGGAAAGACAATGTGAATATATG
GATGTCGAAAAAGAAGGAGCTAAATTTCGTTTTGGTACTGTTCATATCGA
GTCCTATGTCACATCACCAAATATCAGGGAAATTCAAATGGGAGCCATAT
TTGATgttttacaaaagaaaactaAGGACATAGAGCTTGCCTTTTTGGTT
GGTGATTTCAATTTCCATGAAACAGACGAAGAAAATAAGTTTATAGAGAG
TAGTCAATTTAAGGATACATGGCGGGTTGTCCATGAAGATCTAGATGGTT
TCACCAAAGATTCTGATCATAATGTTATGAACCAAATGTTCCATGGGAAG
CCTATtacacagaaaaagaaaaggattGATCGAATTTTGTATATGGAGGA
CACCAATGATGTGAATCATTGGAAGGCAACTCAATGCCAAGTTATTGGGG
ATGAGATATTTGATGAGATCGTCATGCACGATCAAACCAAAGTTTCCATG
TTTCCTTCTGACCATTATGGTTTACTTGCtaagtttgaaaaaaacttaAG
TTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000732XLOC_000732Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001371-proteinTCONS_00001371-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001371-exon-sc0000010-1491911889:697409..697907TCONS_00001371-exon-sc0000010-1491911889:697409..697907Clytia hemisphaericaexon
TCONS_00001371-exon-sc0000010-1510915933:697409..697907TCONS_00001371-exon-sc0000010-1510915933:697409..697907Clytia hemisphaericaexon
TCONS_00001371-exon-sc0000010-1575043694:697409..697907TCONS_00001371-exon-sc0000010-1575043694:697409..697907Clytia hemisphaericaexon
TCONS_00001371-exon-sc0000010-1491911889:698706..699148TCONS_00001371-exon-sc0000010-1491911889:698706..699148Clytia hemisphaericaexon
TCONS_00001371-exon-sc0000010-1510915933:698706..699148TCONS_00001371-exon-sc0000010-1510915933:698706..699148Clytia hemisphaericaexon
TCONS_00001371-exon-sc0000010-1575043694:698706..699148TCONS_00001371-exon-sc0000010-1575043694:698706..699148Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000010supercontigsc0000010:697409..699148 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
11.8047 12.3855 4.04794 2.97136 5.89164 5.31186 4.43263 6.18729 3.62231 5.53045 4.81694 2.7794 4.04671 4.60519 4.88047 3.78342 7.38313 6.85238 3.78684 6.64888 7.64343 6.2861 13.9199 14.4611 7.63399 6.04746 3.86946 2.58541 6.00576 5.76313
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR005135Endo/exonuclease/phosphatase
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00001371 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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