TCONS_00001356 (transcript) - C. hemisphaerica

Overview
NameTCONS_00001356
Unique NameTCONS_00001356
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length461

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00001356 ID=TCONS_00001356|Name=TCONS_00001356|organism=Clytia hemisphaerica|type=transcript|length=461bp
TTTTTAGGACTTAGCGAACCAATCAAAATACGTTTCGCATCAATTATTTT
CACACATGCATTCTGATTGGGTGAGACGTTTACAATATGTTCCACAAGGT
GATCTATTGTTCTCATGTTCCAGTAATGGCCATGATTCATTGGTTTATCG
TTCTTTGGATGAAACCAAACGCAAAGTGTACGTCTTTAAAGTCACAAAGG
TATCGTACTTTTGTATCTAACAATTCATACTTTAGATTTGAAAGGCGCTC
TCGCCACGTGGCTGATTCGCTCGCCACAACTTCAACCTTCCGGTcaggtt
atctgatattccgatgatggattggcggccgcccacgttaaaactctaaa
ggagcgggccaatttcccatcggaaaTGATTGATAGTTGGCCTAGTTTGA
GTAAAGTTGGCCTTTGATGTGCAAGACCCCCAGTAGGGTTCAACTACTCT
TACttaaatat
Run BLAST on NCBI

transcript from alignment at sc0000010:593788..594248+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00001356 ID=TCONS_00001356|Name=TCONS_00001356|organism=Clytia hemisphaerica|type=transcript|length=461bp|location=Sequence derived from alignment at sc0000010:593788..594248+ (Clytia hemisphaerica)
TTTTTAGGACTTAGCGAACCAATCAAAATACGTTTCGCATCAATTATTTT
CACACATGCATTCTGATTGGGTGAGACGTTTACAATATGTTCCACAAGGT
GATCTATTGTTCTCATGTTCCAGTAATGGCCATGATTCATTGGTTTATCG
TTCTTTGGATGAAACCAAACGCAAAGTGTACGTCTTTAAAGTCACAAAGG
TATCGTACTTTTGTATCTAACAATTCATACTTTAGATTTGAAAGGCGCTC
TCGCCACGTGGCTGATTCGCTCGCCACAACTTCAACCTTCCGGTcaggtt
atctgatattccgatgatggattggcggccgcccacgttaaaactctaaa
ggagcgggccaatttcccatcggaaaTGATTGATAGTTGGCCTAGTTTGA
GTAAAGTTGGCCTTTGATGTGCAAGACCCCCAGTAGGGTTCAACTACTCT
TACttaaatat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000728XLOC_000728Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001356-exon-sc0000010-1491911889:593788..594248TCONS_00001356-exon-sc0000010-1491911889:593788..594248Clytia hemisphaericaexon
TCONS_00001356-exon-sc0000010-1510915933:593788..594248TCONS_00001356-exon-sc0000010-1510915933:593788..594248Clytia hemisphaericaexon
TCONS_00001356-exon-sc0000010-1575043694:593788..594248TCONS_00001356-exon-sc0000010-1575043694:593788..594248Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000010supercontigsc0000010:593788..594248 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.995684	0.602106	1.24058	0.390941	0.759424	0.303721	0.724004	0.508353	0.894654	1.00389	1.32464	1.55559	0	0.27602	0	0.112373	0.130195	0.167413	0.211301	0.724683	0.426912	0.726145	0	0	0	0.134902	1.15721	0.318795	0	0.204009
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00001356 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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