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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00001344 ID=TCONS_00001344|Name=TCONS_00001344|organism=Clytia hemisphaerica|type=transcript|length=1632bp
CTAGCTGAATGCAACAAATAACACATAAAGACTAAAAGAATTGAAAGGCG
CAacaattttcacaaaatgtttattttgttgGTTCTATTGCTGTACAATA
CCTTCTTCATAGAGGCTATGGTGAATGAAGTCAAATTGCTAAGTTTACAA
AAGAAACTATTACAGAATCCCTTAGACTACTGGCTATTCAAGGACCAGTA
TAATTCTTTGGATGAATTGCTTATTGATTATACAATGGTGAATAAATCAG
TCTCTTATCCAACGCCAAGTTCAAGTCGTgtcaaaaatttagttttcaaa
gCGTTGAATGGTATTGATGTAAATGTGGCTATTCTTGGTGGTTCTATATC
AGCAGGAGCAACTTTATACAAAGAACATCATCAAAATAAAGTCTATTTCA
GAGTGTTAGAACATTTTTGGAATGAATTAGTTGAACCAGTCACTGGCTCA
AGAATGGTAGTACACGATAATTCGATTGGAGCTATTGGCAGTGATTTTTA
TTCCTATTGTTTGAATAATTATGTTCTTGGGAATTCTACTGATCTTGTTA
TTTGGGAATTATCAGCAAATGATTACCACAGATTCGATAATAGAGATGTT
CCCCCTACATTACCGTTAGAGTTGCTAACACGTAATATATACCGCCTTGA
GAAACGCCCTCTGCTTATCTACGCTCATTTCTTTCGAGGTAAAGATCATA
TCGAGGAGCAGCAATGTAATAACCTCGAAACGGAAGGAGCAACGTATCTA
TCACGTTACTATTGGATACCAACTGTTAGCTGGCGGAAACTAATCTGCAA
GAAACTAGTCATGTCTCAGAACAACGCTTACTTTACAAAAGTATTTGCAG
CAGACAACTCACACCCTAGTTTACTTGGGCATGCTCAGATGGGATTCTTA
TTCTTACACTTAGttcgaaagatttttttacAAGTAATTGACGACTTGTT
TCCGTTGGAAATGCAAACTTCTTCTTTATCTCTCGCTTTACCTCCTGTTG
TTGTTGAACCTCTCACAAAAACAGTTTACACTAAATCTCAAATGGTATCA
GATGATCCTATATGCTTTACTTTTAACATACCAAGTAGTGGTAGGCTACC
TTTCAACCAACGTGACGTTGTAgaaatcattaaaaatgatgGCTACACGA
TATCAACAGCTCACGGATTCACTCAGCGTAAAGACCGTACTGAAGGACTA
AGAACTCGAGCTCAAAACGCAGAACTTAGGTTACGAATACAAGTACCTAT
TCATAGTGGTGATCCACTTAAAGAATGGATGATATTAATTGGATCTTATT
CGAATCTTGGTGGTGCTGTATTTTTCTTGGACGATAGTTTCAGTCGTATT
ATAGAGACGGATAAATACTCATATGGTAGTATTGTTGCAGCTGTGGCGAC
TCATGTGAAACCTGGAACTCATATTTTGGTTATTAAATCTCTGAAAAAAG
GATTCTTCTTATCATCAATAATGTTGGGATAATGTCTTTTTGCCGAAAAT
CGAGAAATATGTGAACTGTTACTctttaagataatgtttttttgtgaTAA
TGGAGTTTGTTTGCGTTCGATTTCATACTCTGGATTCATTTGAATGTAGA
ACAGACCAACTTAGCAAAAGTATaattatttg Run BLAST on NCBI protein sequence of TCONS_00001344-protein >TCONS_00001344-protein ID=TCONS_00001344-protein|Name=TCONS_00001344-protein|organism=Clytia hemisphaerica|type=polypeptide|length=471bp
MFILLVLLLYNTFFIEAMVNEVKLLSLQKKLLQNPLDYWLFKDQYNSLDE
LLIDYTMVNKSVSYPTPSSSRVKNLVFKALNGIDVNVAILGGSISAGATL
YKEHHQNKVYFRVLEHFWNELVEPVTGSRMVVHDNSIGAIGSDFYSYCLN
NYVLGNSTDLVIWELSANDYHRFDNRDVPPTLPLELLTRNIYRLEKRPLL
IYAHFFRGKDHIEEQQCNNLETEGATYLSRYYWIPTVSWRKLICKKLVMS
QNNAYFTKVFAADNSHPSLLGHAQMGFLFLHLVRKIFLQVIDDLFPLEMQ
TSSLSLALPPVVVEPLTKTVYTKSQMVSDDPICFTFNIPSSGRLPFNQRD
VVEIIKNDGYTISTAHGFTQRKDRTEGLRTRAQNAELRLRIQVPIHSGDP
LKEWMILIGSYSNLGGAVFFLDDSFSRIIETDKYSYGSIVAAVATHVKPG
THILVIKSLKKGFFLSSIMLG Run BLAST on NCBI transcript from alignment at sc0000010:492672..494370+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00001344 ID=TCONS_00001344|Name=TCONS_00001344|organism=Clytia hemisphaerica|type=transcript|length=1699bp|location=Sequence derived from alignment at sc0000010:492672..494370+ (Clytia hemisphaerica)
CTAGCTGAATGCAACAAATAACACATAAAGACTAAAAGAATTGAAAGGCG
CAacaattttcacaaaatgtttattttgttgGTTCTATTGCTGTACAATA
CCTTCTTCATAGAGGCTATGGTGAATGAAGTCAAATTGCTAAGTTTACAA
AAGAAACTATTACAGAATCCCTTAGACTACTGGCTATTCAAGGACCAGTA
TAATTCTTTGGATGAATTGCTTATTGATTATACAATGGTGAATAAATCAG
TCTCTTATCCAACGCCAAGTTCAAGTCGTgtcaaaaatttagttttcaaa
gCGTTGAATGGTATTGATGTAAATGTGGCTATTCTTGGTGGTTCTATATC
AGCAGGAGCAACTTTATACAAAGAACATCATCAAAATAAAGTCTATTTCA
GAGTGTTAGAACATTTTTGGAATGAATTAGTTGAACCAGTCACTGGCTCA
AGAATGGTAGTACACGATAATTCGATTGGAGCTATTGGCAGTGATTTTTA
TTCCTATTGTTTGAATAATTATGTTCTTGGGAATTCTACTGATCTTGTTA
TTTGGGAATTATCAGCAAATGATTACCACAGATTCGATAATAGAGATGTT
CCCCCTACATTACCGTTAGAGTTGCTAACACGTAATATATACCGCCTTGA
GAAACGCCCTCTGCTTATCTACGCTCATTTCTTTCGAGGTAAAGATCATA
TCGAGGAGCAGCAATGTAATAACCTCGAAACGGAAGGAGCAACGTATCTA
TCACGTTACTATTGGATACCAACTGTTAGCTGGCGGAAACTAATCTGCAA
GAAACTAGTCATGTCTCAGAACAACGCTTACTTTACAAAAGTATTTGCAG
CAGACAACTCACACCCTAGTTTACTTGGGCATGCTCAGATGGGATTCTTA
TTCTTACACTTAGttcgaaagatttttttacAAGTAATTGACGACTTGTT
TCCGTTGGAAATGCAAACTTCTTCTTTATCTCTCGCTTTACCTCCTGTTG
TTGTTGAACCTCTCACAAAAACAGTTTACACTAAATCTCAAATGGTATCA
GATGATCCTATATGCTTTACTTTTAACATACCAAGTAGTGGTAGGCTACC
TTTCAACCAACGTGACGTTGTAgaaatcattaaaaatgatgGCTACACGA
TATCAACAGCTCACGGATTCACTCAGCGTAAAGACCGTACTGAAGGACTA
AGAACTCGAGCTCAAAACGCAGAACTTAGGTTACGAATACAAGTACCTAN
ACCGTACTGAAGGACTGAGAACTCGAGTTCAAAACGCAGAACTTAGGTTA
CGAATACAAGTACCTATTCATAGTGGTGATCCACTTAAAGAATGGATGAT
ATTAATTGGATCTTATTCGAATCTTGGTGGTGCTGTATTTTTCTTGGACG
ATAGTTTCAGTCGTATTATAGAGACGGATAAATACTCATATGGTAGTATT
GTTGCAGCTGTGGCGACTCATGTGAAACCTGGAACTCATATTTTGGTTAT
TAAATCTCTGAAAAAAGGATTCTTCTTATCATCAATAATGTTGGGATAAT
GTCTTTTTGCCGAAAATCGAGAAATATGTGAACTGTTACTctttaagata
atgtttttttgtgaTAATGGAGTTTGTTTGCGTTCGATTTCATACTCTGG
ATTCATTTGAATGTAGAACAGACCAACTTAGCAAAAGTATaattatttg Coding sequence (CDS) from alignment at sc0000010:492672..494370+ >TCONS_00001344 ID=TCONS_00001344|Name=TCONS_00001344|organism=Clytia hemisphaerica|type=CDS|length=2832bp|location=Sequence derived from alignment at sc0000010:492672..494370+ (Clytia hemisphaerica)
atgtttattttgttgGTTCTATTGCTGTACAATACCTTCTTCATAGAGGC
TATGGTGAATGAAGTCAAATTGCTAAGTTTACAAAAGAAACTATTACAGA
ATCCCTTAGACTACTGGCTATTCAAGGACCAGTATAATTCTTTGGATGAA
TTGCTTATTGATTATACAATGGTGAATAAATCAGTCTCTTATCCAACGCC
AAGTTCAAGTCGTgtcaaaaatttagttttcaaagCGTTGAATGGTATTG
ATGTAAATGTGGCTATTCTTGGTGGTTCTATATCAGCAGGAGCAACTTTA
TACAAAGAACATCATCAAAATAAAGTCTATTTCAGAGTGTTAGAACATTT
TTGGAATGAATTAGTTGAACCAGTCACTGGCTCAAGAATGGTAGTACACG
ATAATTCGATTGGAGCTATTGGCAGTGATTTTTATTCCTATTGTTTGAAT
AATTATGTTCTTGGGAATTCTACTGATCTTGTTATTTGGGAATTATCAGC
AAATGATTACCACAGATTCGATAATAGAGATGTTCCCCCTACATTACCGT
TAGAGTTGCTAACACGTAATATATACCGCCTTGAGAAACGCCCTCTGCTT
ATCTACGCTCATTTCTTTCGAGGTAAAGATCATATCGAGGAGCAGCAATG
TAATAACCTCGAAACGGAAGGAGCAACGTATCTATCACGTTACTATTGGA
TACCAACTGTTAGCTGGCGGAAACTAATCTGCAAGAAACTAGTCATGTCT
CAGAACAACGCTTACTTTACAAAAGTATTTGCAGCAGACAACTCACACCC
TAGTTTACTTGGGCATGCTCAGATGGGATTCTTATTCTTACACTTAGttc
gaaagatttttttacAAGTAATTGACGACTTGTTTCCGTTGGAAATGCAA
ACTTCTTCTTTATCTCTCGCTTTACCTCCTGTTGTTGTTGAACCTCTCAC
AAAAACAGTTTACACTAAATCTCAAATGGTATCAGATGATCCTATATGCT
TTACTTTTAACATACCAAGTAGTGGTAGGCTACCTTTCAACCAACGTGAC
GTTGTAgaaatcattaaaaatgatgGCTACACGATATCAACAGCTCACGG
ATTCACTCAGCGTAAAGACCGTACTGAAGGACTAAGAACTCGAGCTCAAA
ACGCAGAACTTAGGTTACGAATACAAGTACCTATTCATAGTGGTGATCCA
CTTAAAGAATGGATGATATTAATTGGATCTTATTCGAATCTTGGTGGTGC
TGTATTTTTCTTGGACGATAGTTTCAGTCGTATTATAGAGACGGATAAAT
ACTCATATGGTAGTATTGTTGCAGCTGTGGCGACTCATGTGAAACCTGGA
ACTCATATTTTGGTTATTAAATCTCTGAAAAAAGGATTCTTCTTATCATC
AATAATGTTGGGATAAatgtttattttgttgGTTCTATTGCTGTACAATA
CCTTCTTCATAGAGGCTATGGTGAATGAAGTCAAATTGCTAAGTTTACAA
AAGAAACTATTACAGAATCCCTTAGACTACTGGCTATTCAAGGACCAGTA
TAATTCTTTGGATGAATTGCTTATTGATTATACAATGGTGAATAAATCAG
TCTCTTATCCAACGCCAAGTTCAAGTCGTgtcaaaaatttagttttcaaa
gCGTTGAATGGTATTGATGTAAATGTGGCTATTCTTGGTGGTTCTATATC
AGCAGGAGCAACTTTATACAAAGAACATCATCAAAATAAAGTCTATTTCA
GAGTGTTAGAACATTTTTGGAATGAATTAGTTGAACCAGTCACTGGCTCA
AGAATGGTAGTACACGATAATTCGATTGGAGCTATTGGCAGTGATTTTTA
TTCCTATTGTTTGAATAATTATGTTCTTGGGAATTCTACTGATCTTGTTA
TTTGGGAATTATCAGCAAATGATTACCACAGATTCGATAATAGAGATGTT
CCCCCTACATTACCGTTAGAGTTGCTAACACGTAATATATACCGCCTTGA
GAAACGCCCTCTGCTTATCTACGCTCATTTCTTTCGAGGTAAAGATCATA
TCGAGGAGCAGCAATGTAATAACCTCGAAACGGAAGGAGCAACGTATCTA
TCACGTTACTATTGGATACCAACTGTTAGCTGGCGGAAACTAATCTGCAA
GAAACTAGTCATGTCTCAGAACAACGCTTACTTTACAAAAGTATTTGCAG
CAGACAACTCACACCCTAGTTTACTTGGGCATGCTCAGATGGGATTCTTA
TTCTTACACTTAGttcgaaagatttttttacAAGTAATTGACGACTTGTT
TCCGTTGGAAATGCAAACTTCTTCTTTATCTCTCGCTTTACCTCCTGTTG
TTGTTGAACCTCTCACAAAAACAGTTTACACTAAATCTCAAATGGTATCA
GATGATCCTATATGCTTTACTTTTAACATACCAAGTAGTGGTAGGCTACC
TTTCAACCAACGTGACGTTGTAgaaatcattaaaaatgatgGCTACACGA
TATCAACAGCTCACGGATTCACTCAGCGTAAAGACCGTACTGAAGGACTA
AGAACTCGAGCTCAAAACGCAGAACTTAGGTTACGAATACAAGTACCTAT
TCATAGTGGTGATCCACTTAAAGAATGGATGATATTAATTGGATCTTATT
CGAATCTTGGTGGTGCTGTATTTTTCTTGGACGATAGTTTCAGTCGTATT
ATAGAGACGGATAAATACTCATATGGTAGTATTGTTGCAGCTGTGGCGAC
TCATGTGAAACCTGGAACTCATATTTTGGTTATTAAATCTCTGAAAAAAG
GATTCTTCTTATCATCAATAATGTTGGGATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00001344-exon-sc0000010-1491911889:492672..493900 | TCONS_00001344-exon-sc0000010-1491911889:492672..493900 | Clytia hemisphaerica | exon |
| TCONS_00001344-exon-sc0000010-1510915933:492672..493900 | TCONS_00001344-exon-sc0000010-1510915933:492672..493900 | Clytia hemisphaerica | exon |
| TCONS_00001344-exon-sc0000010-1575043694:492672..493900 | TCONS_00001344-exon-sc0000010-1575043694:492672..493900 | Clytia hemisphaerica | exon |
| TCONS_00001344-exon-sc0000010-1491911889:493968..494370 | TCONS_00001344-exon-sc0000010-1491911889:493968..494370 | Clytia hemisphaerica | exon |
| TCONS_00001344-exon-sc0000010-1510915933:493968..494370 | TCONS_00001344-exon-sc0000010-1510915933:493968..494370 | Clytia hemisphaerica | exon |
| TCONS_00001344-exon-sc0000010-1575043694:493968..494370 | TCONS_00001344-exon-sc0000010-1575043694:493968..494370 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000010 | supercontig | sc0000010:492672..494370 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
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| IPR013830 | SGNH_hydro |
Blast
The following BLAST results are available for this feature:
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