Error message

Warning: shell_exec(): Cannot execute a blank command in include() (line 59 of /var/www/marimba/sites/default/modules/tripal_cvterm/theme/templates/tripal_feature_cvterm.tpl.php).

TCONS_00001344 (transcript) - C. hemisphaerica

Overview
NameTCONS_00001344
Unique NameTCONS_00001344
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1632

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00001344 ID=TCONS_00001344|Name=TCONS_00001344|organism=Clytia hemisphaerica|type=transcript|length=1632bp
CTAGCTGAATGCAACAAATAACACATAAAGACTAAAAGAATTGAAAGGCG
CAacaattttcacaaaatgtttattttgttgGTTCTATTGCTGTACAATA
CCTTCTTCATAGAGGCTATGGTGAATGAAGTCAAATTGCTAAGTTTACAA
AAGAAACTATTACAGAATCCCTTAGACTACTGGCTATTCAAGGACCAGTA
TAATTCTTTGGATGAATTGCTTATTGATTATACAATGGTGAATAAATCAG
TCTCTTATCCAACGCCAAGTTCAAGTCGTgtcaaaaatttagttttcaaa
gCGTTGAATGGTATTGATGTAAATGTGGCTATTCTTGGTGGTTCTATATC
AGCAGGAGCAACTTTATACAAAGAACATCATCAAAATAAAGTCTATTTCA
GAGTGTTAGAACATTTTTGGAATGAATTAGTTGAACCAGTCACTGGCTCA
AGAATGGTAGTACACGATAATTCGATTGGAGCTATTGGCAGTGATTTTTA
TTCCTATTGTTTGAATAATTATGTTCTTGGGAATTCTACTGATCTTGTTA
TTTGGGAATTATCAGCAAATGATTACCACAGATTCGATAATAGAGATGTT
CCCCCTACATTACCGTTAGAGTTGCTAACACGTAATATATACCGCCTTGA
GAAACGCCCTCTGCTTATCTACGCTCATTTCTTTCGAGGTAAAGATCATA
TCGAGGAGCAGCAATGTAATAACCTCGAAACGGAAGGAGCAACGTATCTA
TCACGTTACTATTGGATACCAACTGTTAGCTGGCGGAAACTAATCTGCAA
GAAACTAGTCATGTCTCAGAACAACGCTTACTTTACAAAAGTATTTGCAG
CAGACAACTCACACCCTAGTTTACTTGGGCATGCTCAGATGGGATTCTTA
TTCTTACACTTAGttcgaaagatttttttacAAGTAATTGACGACTTGTT
TCCGTTGGAAATGCAAACTTCTTCTTTATCTCTCGCTTTACCTCCTGTTG
TTGTTGAACCTCTCACAAAAACAGTTTACACTAAATCTCAAATGGTATCA
GATGATCCTATATGCTTTACTTTTAACATACCAAGTAGTGGTAGGCTACC
TTTCAACCAACGTGACGTTGTAgaaatcattaaaaatgatgGCTACACGA
TATCAACAGCTCACGGATTCACTCAGCGTAAAGACCGTACTGAAGGACTA
AGAACTCGAGCTCAAAACGCAGAACTTAGGTTACGAATACAAGTACCTAT
TCATAGTGGTGATCCACTTAAAGAATGGATGATATTAATTGGATCTTATT
CGAATCTTGGTGGTGCTGTATTTTTCTTGGACGATAGTTTCAGTCGTATT
ATAGAGACGGATAAATACTCATATGGTAGTATTGTTGCAGCTGTGGCGAC
TCATGTGAAACCTGGAACTCATATTTTGGTTATTAAATCTCTGAAAAAAG
GATTCTTCTTATCATCAATAATGTTGGGATAATGTCTTTTTGCCGAAAAT
CGAGAAATATGTGAACTGTTACTctttaagataatgtttttttgtgaTAA
TGGAGTTTGTTTGCGTTCGATTTCATACTCTGGATTCATTTGAATGTAGA
ACAGACCAACTTAGCAAAAGTATaattatttg
Run BLAST on NCBI

protein sequence of TCONS_00001344-protein

>TCONS_00001344-protein ID=TCONS_00001344-protein|Name=TCONS_00001344-protein|organism=Clytia hemisphaerica|type=polypeptide|length=471bp
MFILLVLLLYNTFFIEAMVNEVKLLSLQKKLLQNPLDYWLFKDQYNSLDE
LLIDYTMVNKSVSYPTPSSSRVKNLVFKALNGIDVNVAILGGSISAGATL
YKEHHQNKVYFRVLEHFWNELVEPVTGSRMVVHDNSIGAIGSDFYSYCLN
NYVLGNSTDLVIWELSANDYHRFDNRDVPPTLPLELLTRNIYRLEKRPLL
IYAHFFRGKDHIEEQQCNNLETEGATYLSRYYWIPTVSWRKLICKKLVMS
QNNAYFTKVFAADNSHPSLLGHAQMGFLFLHLVRKIFLQVIDDLFPLEMQ
TSSLSLALPPVVVEPLTKTVYTKSQMVSDDPICFTFNIPSSGRLPFNQRD
VVEIIKNDGYTISTAHGFTQRKDRTEGLRTRAQNAELRLRIQVPIHSGDP
LKEWMILIGSYSNLGGAVFFLDDSFSRIIETDKYSYGSIVAAVATHVKPG
THILVIKSLKKGFFLSSIMLG
Run BLAST on NCBI

transcript from alignment at sc0000010:492672..494370+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00001344 ID=TCONS_00001344|Name=TCONS_00001344|organism=Clytia hemisphaerica|type=transcript|length=1699bp|location=Sequence derived from alignment at sc0000010:492672..494370+ (Clytia hemisphaerica)
CTAGCTGAATGCAACAAATAACACATAAAGACTAAAAGAATTGAAAGGCG CAacaattttcacaaaatgtttattttgttgGTTCTATTGCTGTACAATA CCTTCTTCATAGAGGCTATGGTGAATGAAGTCAAATTGCTAAGTTTACAA AAGAAACTATTACAGAATCCCTTAGACTACTGGCTATTCAAGGACCAGTA TAATTCTTTGGATGAATTGCTTATTGATTATACAATGGTGAATAAATCAG TCTCTTATCCAACGCCAAGTTCAAGTCGTgtcaaaaatttagttttcaaa gCGTTGAATGGTATTGATGTAAATGTGGCTATTCTTGGTGGTTCTATATC AGCAGGAGCAACTTTATACAAAGAACATCATCAAAATAAAGTCTATTTCA GAGTGTTAGAACATTTTTGGAATGAATTAGTTGAACCAGTCACTGGCTCA AGAATGGTAGTACACGATAATTCGATTGGAGCTATTGGCAGTGATTTTTA TTCCTATTGTTTGAATAATTATGTTCTTGGGAATTCTACTGATCTTGTTA TTTGGGAATTATCAGCAAATGATTACCACAGATTCGATAATAGAGATGTT CCCCCTACATTACCGTTAGAGTTGCTAACACGTAATATATACCGCCTTGA GAAACGCCCTCTGCTTATCTACGCTCATTTCTTTCGAGGTAAAGATCATA TCGAGGAGCAGCAATGTAATAACCTCGAAACGGAAGGAGCAACGTATCTA TCACGTTACTATTGGATACCAACTGTTAGCTGGCGGAAACTAATCTGCAA GAAACTAGTCATGTCTCAGAACAACGCTTACTTTACAAAAGTATTTGCAG CAGACAACTCACACCCTAGTTTACTTGGGCATGCTCAGATGGGATTCTTA TTCTTACACTTAGttcgaaagatttttttacAAGTAATTGACGACTTGTT TCCGTTGGAAATGCAAACTTCTTCTTTATCTCTCGCTTTACCTCCTGTTG TTGTTGAACCTCTCACAAAAACAGTTTACACTAAATCTCAAATGGTATCA GATGATCCTATATGCTTTACTTTTAACATACCAAGTAGTGGTAGGCTACC TTTCAACCAACGTGACGTTGTAgaaatcattaaaaatgatgGCTACACGA TATCAACAGCTCACGGATTCACTCAGCGTAAAGACCGTACTGAAGGACTA AGAACTCGAGCTCAAAACGCAGAACTTAGGTTACGAATACAAGTACCTAN ACCGTACTGAAGGACTGAGAACTCGAGTTCAAAACGCAGAACTTAGGTTA CGAATACAAGTACCTATTCATAGTGGTGATCCACTTAAAGAATGGATGAT ATTAATTGGATCTTATTCGAATCTTGGTGGTGCTGTATTTTTCTTGGACG ATAGTTTCAGTCGTATTATAGAGACGGATAAATACTCATATGGTAGTATT GTTGCAGCTGTGGCGACTCATGTGAAACCTGGAACTCATATTTTGGTTAT TAAATCTCTGAAAAAAGGATTCTTCTTATCATCAATAATGTTGGGATAAT GTCTTTTTGCCGAAAATCGAGAAATATGTGAACTGTTACTctttaagata atgtttttttgtgaTAATGGAGTTTGTTTGCGTTCGATTTCATACTCTGG ATTCATTTGAATGTAGAACAGACCAACTTAGCAAAAGTATaattatttg

Coding sequence (CDS) from alignment at sc0000010:492672..494370+

>TCONS_00001344 ID=TCONS_00001344|Name=TCONS_00001344|organism=Clytia hemisphaerica|type=CDS|length=2832bp|location=Sequence derived from alignment at sc0000010:492672..494370+ (Clytia hemisphaerica)
atgtttattttgttgGTTCTATTGCTGTACAATACCTTCTTCATAGAGGC
TATGGTGAATGAAGTCAAATTGCTAAGTTTACAAAAGAAACTATTACAGA
ATCCCTTAGACTACTGGCTATTCAAGGACCAGTATAATTCTTTGGATGAA
TTGCTTATTGATTATACAATGGTGAATAAATCAGTCTCTTATCCAACGCC
AAGTTCAAGTCGTgtcaaaaatttagttttcaaagCGTTGAATGGTATTG
ATGTAAATGTGGCTATTCTTGGTGGTTCTATATCAGCAGGAGCAACTTTA
TACAAAGAACATCATCAAAATAAAGTCTATTTCAGAGTGTTAGAACATTT
TTGGAATGAATTAGTTGAACCAGTCACTGGCTCAAGAATGGTAGTACACG
ATAATTCGATTGGAGCTATTGGCAGTGATTTTTATTCCTATTGTTTGAAT
AATTATGTTCTTGGGAATTCTACTGATCTTGTTATTTGGGAATTATCAGC
AAATGATTACCACAGATTCGATAATAGAGATGTTCCCCCTACATTACCGT
TAGAGTTGCTAACACGTAATATATACCGCCTTGAGAAACGCCCTCTGCTT
ATCTACGCTCATTTCTTTCGAGGTAAAGATCATATCGAGGAGCAGCAATG
TAATAACCTCGAAACGGAAGGAGCAACGTATCTATCACGTTACTATTGGA
TACCAACTGTTAGCTGGCGGAAACTAATCTGCAAGAAACTAGTCATGTCT
CAGAACAACGCTTACTTTACAAAAGTATTTGCAGCAGACAACTCACACCC
TAGTTTACTTGGGCATGCTCAGATGGGATTCTTATTCTTACACTTAGttc
gaaagatttttttacAAGTAATTGACGACTTGTTTCCGTTGGAAATGCAA
ACTTCTTCTTTATCTCTCGCTTTACCTCCTGTTGTTGTTGAACCTCTCAC
AAAAACAGTTTACACTAAATCTCAAATGGTATCAGATGATCCTATATGCT
TTACTTTTAACATACCAAGTAGTGGTAGGCTACCTTTCAACCAACGTGAC
GTTGTAgaaatcattaaaaatgatgGCTACACGATATCAACAGCTCACGG
ATTCACTCAGCGTAAAGACCGTACTGAAGGACTAAGAACTCGAGCTCAAA
ACGCAGAACTTAGGTTACGAATACAAGTACCTATTCATAGTGGTGATCCA
CTTAAAGAATGGATGATATTAATTGGATCTTATTCGAATCTTGGTGGTGC
TGTATTTTTCTTGGACGATAGTTTCAGTCGTATTATAGAGACGGATAAAT
ACTCATATGGTAGTATTGTTGCAGCTGTGGCGACTCATGTGAAACCTGGA
ACTCATATTTTGGTTATTAAATCTCTGAAAAAAGGATTCTTCTTATCATC
AATAATGTTGGGATAAatgtttattttgttgGTTCTATTGCTGTACAATA
CCTTCTTCATAGAGGCTATGGTGAATGAAGTCAAATTGCTAAGTTTACAA
AAGAAACTATTACAGAATCCCTTAGACTACTGGCTATTCAAGGACCAGTA
TAATTCTTTGGATGAATTGCTTATTGATTATACAATGGTGAATAAATCAG
TCTCTTATCCAACGCCAAGTTCAAGTCGTgtcaaaaatttagttttcaaa
gCGTTGAATGGTATTGATGTAAATGTGGCTATTCTTGGTGGTTCTATATC
AGCAGGAGCAACTTTATACAAAGAACATCATCAAAATAAAGTCTATTTCA
GAGTGTTAGAACATTTTTGGAATGAATTAGTTGAACCAGTCACTGGCTCA
AGAATGGTAGTACACGATAATTCGATTGGAGCTATTGGCAGTGATTTTTA
TTCCTATTGTTTGAATAATTATGTTCTTGGGAATTCTACTGATCTTGTTA
TTTGGGAATTATCAGCAAATGATTACCACAGATTCGATAATAGAGATGTT
CCCCCTACATTACCGTTAGAGTTGCTAACACGTAATATATACCGCCTTGA
GAAACGCCCTCTGCTTATCTACGCTCATTTCTTTCGAGGTAAAGATCATA
TCGAGGAGCAGCAATGTAATAACCTCGAAACGGAAGGAGCAACGTATCTA
TCACGTTACTATTGGATACCAACTGTTAGCTGGCGGAAACTAATCTGCAA
GAAACTAGTCATGTCTCAGAACAACGCTTACTTTACAAAAGTATTTGCAG
CAGACAACTCACACCCTAGTTTACTTGGGCATGCTCAGATGGGATTCTTA
TTCTTACACTTAGttcgaaagatttttttacAAGTAATTGACGACTTGTT
TCCGTTGGAAATGCAAACTTCTTCTTTATCTCTCGCTTTACCTCCTGTTG
TTGTTGAACCTCTCACAAAAACAGTTTACACTAAATCTCAAATGGTATCA
GATGATCCTATATGCTTTACTTTTAACATACCAAGTAGTGGTAGGCTACC
TTTCAACCAACGTGACGTTGTAgaaatcattaaaaatgatgGCTACACGA
TATCAACAGCTCACGGATTCACTCAGCGTAAAGACCGTACTGAAGGACTA
AGAACTCGAGCTCAAAACGCAGAACTTAGGTTACGAATACAAGTACCTAT
TCATAGTGGTGATCCACTTAAAGAATGGATGATATTAATTGGATCTTATT
CGAATCTTGGTGGTGCTGTATTTTTCTTGGACGATAGTTTCAGTCGTATT
ATAGAGACGGATAAATACTCATATGGTAGTATTGTTGCAGCTGTGGCGAC
TCATGTGAAACCTGGAACTCATATTTTGGTTATTAAATCTCTGAAAAAAG
GATTCTTCTTATCATCAATAATGTTGGGATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000725XLOC_000725Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001344-proteinTCONS_00001344-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001344-exon-sc0000010-1491911889:492672..493900TCONS_00001344-exon-sc0000010-1491911889:492672..493900Clytia hemisphaericaexon
TCONS_00001344-exon-sc0000010-1510915933:492672..493900TCONS_00001344-exon-sc0000010-1510915933:492672..493900Clytia hemisphaericaexon
TCONS_00001344-exon-sc0000010-1575043694:492672..493900TCONS_00001344-exon-sc0000010-1575043694:492672..493900Clytia hemisphaericaexon
TCONS_00001344-exon-sc0000010-1491911889:493968..494370TCONS_00001344-exon-sc0000010-1491911889:493968..494370Clytia hemisphaericaexon
TCONS_00001344-exon-sc0000010-1510915933:493968..494370TCONS_00001344-exon-sc0000010-1510915933:493968..494370Clytia hemisphaericaexon
TCONS_00001344-exon-sc0000010-1575043694:493968..494370TCONS_00001344-exon-sc0000010-1575043694:493968..494370Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000010supercontigsc0000010:492672..494370 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0 0 0 0 0.403461 0.345388 1.44241 1.65045 0.220599 0.156141 1.21244 1.10419 1.25189 2.23857 0.587516 2.56756 1.1604 0.968762 0 0 0.626739 0.617281 0.514551 0.636729 0.281064 0.621135 0.170931 0.0912112 0 0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR013830SGNH_hydro
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00001344 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top