TCONS_00001343 (transcript) - C. hemisphaerica

Overview
NameTCONS_00001343
Unique NameTCONS_00001343
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2445

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00001343 ID=TCONS_00001343|Name=TCONS_00001343|organism=Clytia hemisphaerica|type=transcript|length=2445bp
ACtgtttcttcacttttttgatttgatgaaaattaggcattaaatatttt
tatgacaGAGAAAAGTCACAATTGATATTCTTAAATAAATAATCTATTTA
ACAATAATTACAAAGAATGTGCGAAATAGAAAAACTACTTTTTTACCATG
ACCAAAGCCGAAAAACTTGTTATTCAAATAAACAATACCTCTTCAGGAAA
AAGATCCAAGGTTTTTCTCAGTCAGGTAACTGATTCAAAAATAAATCCCT
TATAAATGTCATTCATTATCGATTCGACTATTTTTCCCAATAAAGTGTAA
CTGTTGCTCACTTTATCGTCTTTGGATGGCTTCTTATTGTATGATTTCTC
ACAGATTCTCCATTTATCAAGAAATTATATTCTTCAACTCTATGAGCTGT
CAACGTTATTTGTATTGGAACTGAATTCACAATAACCAATGTTGCTTAGT
AATCCTTGCCAGCATCAAGGAGGAACCTTAGGTCGATGCGGTGAATTCAA
AAGTATTGATGAGGAGcgtttttgaattttctctttTCCACCGATATCCA
AGCAGCCTTCCAAAGAATATACAAGCAATCAAATGATACCCCCGTACCTC
ATACATCAATATATTCATTCAAAAGAAGTTTAAAAGTCATTAAGAAAACA
AATACGGTTTAAGGTTATATGGAAAAACGGCTAAGGCACTAAGGGGTATT
CATTTAATCATACTCATACATCATACTATAAACACACACAAAGTCATGCG
ACTGGCTCTGAAGGTTGGGATACTTCTGCAGCTGGAGCTTCCGGTTGAGG
GACTCCTTCTGCAACTGGAGCCTCTGGTTGTGGGGCTGCTTCTGCAACTG
GTACTTCTAGTTGAGGGACTCCTTCTGCAACTGGAGCCTCTGGTTGTTGG
GCTGCTTCTGCGACTGGAGCCTCTGGTTGTGGGGCTGCTTCAACAACTGG
AGCCTGTGCTTGTGGACCTGCTTCTGCAATGGGAGCCTCTGGCTGTGGGG
CTGCTTCAGCAACAAGAGCTTCTGCTTGTGGGACTTGAGCTTCTGGTTGA
GGGACTGCTTCTGCAACTGGAGCTTCTGCTTCCAGGGCTGCTTCTGCGGC
TGGAGCTTCTGATTGTGGGGCTGTTTCTGCGACTGGAGCCTCTGGTTGTG
GGGCTGCTTCAACAACTGGAGCCTCTGCTTGTGGAACTGCTTCTGCGATG
GGAGCCTCTGGTTGAGGGGCTGCTTCAGCGACAGGAGCTTCTGATTGTGG
GGCTGCTTCTGCGACTGGAGCCTCTGGTTGTGGGGCTGCTTCTGCGACTG
GAGCCTCTGGTTGTGGGGCTGCTTCAACAACTGGAGCATCTGCTTGTGGA
ACTGCTTCTGCGATGGCAGCCTCTGGTTGTGGGGCTGCTTCAGCGACAGG
AGCTTCTGGTTGTGGGGCTGCTTCAGCGACAGGAGCCCCTGCTTGTGGAG
CTAGAGCTTCTGGTTGTGGGACTGCTTCTGCGACTGGAGCTTCTGGTTGA
GGGACTGCTTCTGCGACTGGAGCTTCTGGTTGAGGGACTGCTTCTGCGAC
TGGAGCCTCTGGTTGCGGGACTGCTTCTGTGACTGGGGCTTCTGGTTGAG
GGGCTGCTTCTGCGACTGGAGCTTCTGGTTGAGGGACTGCTTCTGTAACT
GGAGCCTCTGCTTGAAGGGCTGCTTCTGCGGCTGGAGCTTTTGGTTGTGG
GGCTGCTTCTGCTGCTGGAGCTTCCGGTTGTGGAGCTGCTTCAGCGACAG
AAGCCTCTGCTTGTGGGACTGGAGCTTCTTGTTGTAGGGCTACTTCTGCG
GCTGGGACTTCTGGTTGCGGCGCTGCCTGTGCGGCTGGAGCTACTTCAAC
TTCGGGAGTCTCCTGCTTTGGTGTCTCTGAAGCAGAAGTTGATACTTCTT
GAGTAGTTTGTTCGTTGGATTCTAAAAAAGAGAGACATTAAAAAAATGAC
GTCTTTTACAAGATACCATATTACTCCTAATTTTTTCACCCTAGAAGGAT
TGATGTTTTTCAATGGTCATGCATACTAAAACAGATTAAAAAACAGAtag
ttgattttactttttaattCTATATTCTGCAACCTGTTTCTTtcttattc
aataaaataggTGTTGTTTTTTTAATCTCAAGGTAATATTATTCTCCAAA
CTTACCTGAAGTCATCTTTAAATCGAAAATTTAATTCTTCTAGaaagaaa
attctcaaaaaaatatcaaagaagcACTTGTGTCGTCAAAGCTCAAATCA
AAAGGGGAAGGTTGATGGCATAAATGTTtcttttacttcaaatttttttc
ataccaAGCCTCGAAGAAGGAGTGTCAATTCCTACCGATTCCGTAACACC
GTTGTTTACTTTACCATATAAGATCACCGCACTTCTTCACTGTTGATATA
TTTTTGATGGCACGTAAACTTTATACGAAATATGTAAAATATTAA
Run BLAST on NCBI

transcript from alignment at sc0000010:409898..412860+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00001343 ID=TCONS_00001343|Name=TCONS_00001343|organism=Clytia hemisphaerica|type=transcript|length=2963bp|location=Sequence derived from alignment at sc0000010:409898..412860+ (Clytia hemisphaerica)
ACtgtttcttcacttttttgatttgatgaaaattaggcattaaatatttt
tatgacaGAGAAAAGTCACAATTGATATTCTTAAATAAATAATCTATTTA
ACAATAATTACAAAGAATGTGCGAAATAGAAAAACTACTTTTTTACCATG
ACCAAAGCCGAAAAACTTGTTATTCAAATAAACAATACCTCTTCAGGAAA
AAGATCCAAGGTTTTTCTCAGTCAGGTAACTGATTCAAAAATAAATCCCT
TATAAATGTCATTCATTATCGATTCGACTATTTTTCCCAATAAAGTGTAA
CTGTTGCTCACTTTATCGTCTTTGGATGGCTTCTTATTGTATGATTTCTC
ACAGATTCTCCATTTATCAAGAAATTATATTCTTCAACTCTATGAGCTGT
CAACGTTATTTGTATTGGAACTGAATTCACAATAACCAATGTTGCTTAGT
AATCCTTGCCAGCATCAAGGAGGAACCTTAGGTCGATGCGGTGAATTCAA
AAGTATTGATGAGGAGcgtttttgaattttctctttTCCACCGATATCCA
AGCAGCCTTCCAAAGAATATACAAGCAATCAAATGATACCCCCGTACCTC
ATACATCAATATATTCATTCAAAAGAAGTTTAAAAGTCATTAAGAAAACA
AATACGGTTTAAGGTTATATGGAAAAACGGCTAAGGCACTAAGGGGTATT
CATTTAATCATACTCATACATCATACTATAAACACACACAAAGTCATGCG
ACTGGCTCTGAAGGTTGGGATACTTCTGCAGCTGGAGCTTCCGGTTGAGG
GGCTGCTTCTACGGCTGGANTTCCAAAGAATATACAAGGAATCAAATGAT
ACCCCCGTACCTCATACATCAATATATTCATTCAAAAGAAGTTTAAAAGT
CATTAAGAAAACAAATACGGTTTAAGGTTATATGGAAAAACGGCTAAGGC
ACTAAGGGGTATTCATTTAATCATACTCATACATCATACTATAAACACAC
ACAAAGTCATGCGACTGGCTCTGAAGGTTGGGATACTTCTGCAGCTGGAG
CTTCCGGTTGGGGGGCTGCTTCTACGGCTGGAGCTTCTGGCTGTTGAGCA
GGAGTTTCTGGTTGTGGGGCTGCTTCTGCGGCTGGGGCCTCTGCTTGTGG
GATGGCTTCAGCGACAGGAGCCTCTGATTGTGGGACTGGAGATTCTGGTT
GTGGGGCTACTTCTGCAGCAGGAGCCTCCGGTTGTGGGGCTGCTTCTGCG
ACTGGAACTTCTGGAACTGGAGCCTCTGGTTGTGGGGCTGCTTCTGCAAC
TGGAGCTTCTGGTTGAGAGACTCCTTCTGCAACTGGAGCCTCTGGTTGTG
GGGCTGCTTCTGCAACTGGTACTTCTAGTTGAGGGACTCCTTCTGCAACT
GGAGCCTCTGGTTGTTGGGCTGCTTCTGCGACTGGAGCCTCTGGTTGTGG
GGCTGCTTCAACAACTGGAGCCTGTGCTTGTGGACCTGCTTCTGCAATGG
GAGCCTCTGGCTGTGGGGCTGCTTCAGCAACAAGAGCTTCTGCTTGTGGG
ACTTGAGCTTCTGGTTGAGGGACTGCTTCTGCAACTGGAGCTTCTGCTTC
CAGGGCTGCTTCTGCGGCTGGAGCTTCTGATTGTGGGGCTGTTTCTGCGA
CTGGAGCCTCTGGTTGTGGGGCTGCTTCAACAACTGGAGCCTCTGCTTGT
GGAACTGCTTCTGCGATGGGAGCCTCTGGTTGAGGGGCTGCTTCAGCGAC
AGGAGCTTCTGATTGTGGGGCTGCTTCTGCGACTGGAGCCTCTGGTTGTG
GGGCTGCTTCTGCGACTGGAGCCTCTGGTTGTGGGGCTGCTTCAACAACT
GGAGCATCTGCTTGTGGAACTGCTTCTGCGATGGCAGCCTCTGGTTGTGG
GGCTGCTTCAGCGACAGGAGCTTCTGGTTGTGGGGCTGCTTCAGCGACAG
GAGCCCCTGCTTGTGGAGCTAGAGCTTCTGGTTGTGGGACTGCTTCTGCG
ACTGGAGCTTCTGGTTGAGGGACTGCTTCTGCGACTGGAGCTTCTGGTTG
AGGGACTGCTTCTGCGACTGGAGCCTCTGGTTGCGGGACTGCTTCTGTGA
CTGGGGCTTCTGGTTGAGGGGCTGCTTCTGCGACTGGAGCTTCTGGTTGA
GGGACTGCTTCTGTAACTGGAGCCTCTGCTTGAAGGGCTGCTTCTGCGGC
TGGAGCTTTTGGTTGTGGGGCTGCTTCTGCTGCTGGAGCTTCCGGTTGTG
GAGCTGCTTCAGCGACAGAAGCCTCTGCTTGTGGGACTGGAGCTTCTTGT
TGTAGGGCTACTTCTGCGGCTGGGACTTCTGGTTGCGGCGCTGCCTGTGC
GGCTGGAGCTACTTCAACTTCGGGAGTCTCCTGCTTTGGTGTCTCTGAAG
CAGAAGTTGATACTTCTTGAGTAGTTTGTTCGTTGGATTCTAAAAAAGAG
AGACATTAAAAAAATGACGTCTTTTACAAGATACCATATTACTCCTAATT
TTTTCACCCTAGAAGGATTGATGTTTTTCAATGGTCATGCATACTAAAAC
AGATTAAAAAACAGAtagttgattttactttttaattCTATATTCTGCAA
CCTGTTTCTTtcttattcaataaaataggTGTTGTTTTTTTAATCTCAAG
GTAATATTATTCTCCAAACTTACCTGAAGTCATCTTTAAATCGAAAATTT
AATTCTTCTAGaaagaaaattctcaaaaaaatatcaaagaagcACTTGTG
TCGTCAAAGCTCAAATCAAAAGGGGAAGGTTGATGGCATAAATGTTtctt
ttacttcaaatttttttcataccaAGCCTCGAAGAAGGAGTGTCAATTCC
TACCGATTCCGTAACACCGTTGTTTACTTTACCATATAAGATCACCGCAC
TTCTTCACTGTTGATATATTTTTGATGGCACGTAAACTTTATACGAAATA
TGTAAAATATTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000724XLOC_000724Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001343-exon-sc0000010-1491911889:409898..410698TCONS_00001343-exon-sc0000010-1491911889:409898..410698Clytia hemisphaericaexon
TCONS_00001343-exon-sc0000010-1510915933:409898..410698TCONS_00001343-exon-sc0000010-1510915933:409898..410698Clytia hemisphaericaexon
TCONS_00001343-exon-sc0000010-1575043694:409898..410698TCONS_00001343-exon-sc0000010-1575043694:409898..410698Clytia hemisphaericaexon
TCONS_00001343-exon-sc0000010-1491911889:411217..412860TCONS_00001343-exon-sc0000010-1491911889:411217..412860Clytia hemisphaericaexon
TCONS_00001343-exon-sc0000010-1510915933:411217..412860TCONS_00001343-exon-sc0000010-1510915933:411217..412860Clytia hemisphaericaexon
TCONS_00001343-exon-sc0000010-1575043694:411217..412860TCONS_00001343-exon-sc0000010-1575043694:411217..412860Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000010supercontigsc0000010:409898..412860 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0475998	0	0.017965	0	0	0	0	0	0.16008	0.062131	0	0.0669571	0	0.043835	0.0991054	0.0676807	86.6295	109.373	0	0	107.502	120.626	0.192321	0.381815	0.127634	0.269175	0	0	0	0.0179425
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00001343 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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