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TCONS_00001341 (transcript) - C. hemisphaerica

Overview
NameTCONS_00001341
Unique NameTCONS_00001341
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1526

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00001341 ID=TCONS_00001341|Name=TCONS_00001341|organism=Clytia hemisphaerica|type=transcript|length=1526bp
caagcaacaaatcataaacaacaaaaaatctGACAAAGAGGAAAAAAGGA
TTCTATTCTCGGAGAATCATGTTTAGAACTGTATTCTTAGGTATTCTGTG
CATTTACTGGTGTGAatgttcaaaacaaatttgGAACCATGCTGCTATTG
GTAAGGCGTACGCCTGGCAGCCTTTTTACGAAGTATCTCTTATGGATGAG
CGACAATGTTTTGGTCAATGCGTTTACAATGAAAAATGTCTCTCATTCGA
GGTTTATCAAACAGTTCCTCGAAAAGTCGAATGtcgattgtttgattttg
tGTACGAGTATTATACCAAATTCAAAGAGTTGGATATGAAAGTGGGGTCA
AAGATCTATTCGAAACCGTTAGAAAAAGTTTGTACGACATGTAAAAGTTG
TCTTGATTATTCAAAAAAAGGACACTTGAAAAATGGCGTTTACGAAGTAG
ATTTGTTAGGAACACGACGTGATGTTTATTGCTTCATGGAAGGCGAGGGC
GGAGGGTGGATGGCGTTTCAAAGGCGTTATGATGGTTCAGTTTCATTTGA
AGATAAAGAATGGGCAGAGTACAAAGATGGATTTGGAGATGGGTCAGGAG
AATATTGGTTAGGTCTTGAAACACTTCATCAGTTGACATCAACGCAATCA
TATGACTTATACGCGAGGGCGATGGATTTTTCCGGTGTTTGGGAGAGCAA
AAGATTCGCCGGTTTTACCATCGGCTCTGAGTTAATGGAGAGATACAAAT
TCGACTTCCAGTCTATCTACAGTGGAACTCAATACAGCAATCATAGTTTA
TTTGAAAGAGCGAAGGGCATGAAATTCAGCACTCCGACCCGTGACAACGA
TTTGTACACACCAATTCCAACTTGTGCTATTAGGTTTCCAGGAGGCAAGC
ATTATACTCTAAGGTCCCAAATAGTAGGAGGGGAGGGAGTCCGGATAAAA
GGGAAGGGTCCCGAAATTTCTTTTGAACCGCGAACCTAATTGGCGGGGCC
AGTCCTGATAAGAAGAAGGGGAGAATTTCATATATTAATAAagttttaat
aaacgggggaagGGGTGCGTTCTTTTCGAGACCTTAGGGTAGgtgaatat
tttgaatttgtgtCGAAAAAAGATATTTGCCGTAATTTGGATTACAAACG
GCCGTCTTTTAGGCTACGTCATGTTTTCCTTCCTACTAGCGCTGTTTATT
ACGAAGACTGGTACCTTATCGGctctttttacaccggcccttattggcgt
tatttttgggcttgtggcgtaataagggccggcgttaaaagggccaagat
tttgcaattttaacctaaaagcggagttaattttttatcattatttctca
attcaaaggattttaggtatgattggaagacaaaaattattatccattgt
tttactccaaaATCAGGCTGTGatgtaataagggccggcgtttaatgggc
cggcgttaaattagggccggcgtaaaaagggccgataaggtagtctTTTT
GATCGACTATTCGAGCTGTGTGAATC
Run BLAST on NCBI

transcript from alignment at sc0000010:311634..313582+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00001341 ID=TCONS_00001341|Name=TCONS_00001341|organism=Clytia hemisphaerica|type=transcript|length=1949bp|location=Sequence derived from alignment at sc0000010:311634..313582+ (Clytia hemisphaerica)
caagcaacaaatcataaacaacaaaaaatctGACAAAGAGGAAAAAAGGA TTCTATTCTCGGAGAATCATGTTTAGAACTGTATTCTTAGGTATTCTGTG CATTTACTGGTGTGAatgttcaaaacaaatttgGAACCATGCTGCTATTG GTAAGGCGTACGCCTGGCAGCCTTTTTACGAAGTATCTCTTATGGATGAG CGACAATGTTTTGGTCAATGCGTTTACAATGAAAAATGTCTCTCATTCGA GGTTTATCAAACAGTTCCTCGAAAAGTCGAATGtcgattgtttgattttg tGTACGAGTATTATACCAAATTCAAAGAGTTGGATATGAAAGTGGGGTCA AAGATCTATTCGAAACCGTTAGAAAAAGTTTGTACGACATGTAAAAGTTG TCTTGATTATTCAAAAAAAGGACACTTGAAAAATGGCGTTTACGAAGTAG ATTTGTTAGGAACACGACGTGATGTTTATTGCTTCATGGAAGGCGAGGGC GGAGGGTGGATGGCGTTTCAAAGGCGTTATGATGGTTCAGTTTCATTTGA AGATAAAGAATGGGCAGAGTACAAAGATGGATTTGGAGATGGGTCAGGTA AGATATTTCTGAACAagcttttgtaatgaataacaGAAAATCAAACTAAA AGAAAATCAAGACCAAACTTGATGTTCATTTTACATTCGCAGCATTTAAA GAAGTactcgtttttttataagaacatccacaaattttgaagccttcgga tgttctttactttttgagtttcaagcctaaaaatgttcttaatatgttct taaatTCCCCATTTTGTGAGTGTGAGTGccaattttcttaagaaatcggg tgttgtccacaaagccttaacatattttcaacttgttcttaacattttag ccatcgaagccttatgttcttgtatagtttgtttttattttgaaaacgtG TAGGATAAAGGAAACCTAAATACTCATAGTGCAGAGTTAAAGTTTTCTTC TTATTTCATCAAATTCACAGGAGAATATTGGTTAGGTCTTGAAACACTTC ATCAGTTGACATCAACGCAATCATATGACTTATACGCGAGGGCGATGGAT TTTTCCGGTGTTTGGGAGAGCAAAAGATTCGCCGGTTTTACCATCGGCTC TGAGTTAATGGAGAGATACAAATTCGACTTCCAGTCTATCTACAGTGGAA CTCAATACAGCAATCATAGTTTATTTGAAAGAGCGAAGGGCATGAAATTC AGCACTCCGACCCGTGACAACGATTTGTACACACCAATTCCAACTTGTGC TATTAGGTTTCCAGGAGGCAAGCATTATACTCTAAGGTCCCAAATAGTAG GAGGGGAGGGAGTCCGGATAAAAGGGAAGGGTCCCGAAATTTCTTTTGAA CCGCGAACCTAATTGGCGGGGCCAGTCCTGATAAGAAGAAGGGGAGAATT TCATATATTAATAAagttttaataaacgggggaagGGGTGCGTTCTTTTC GAGACCTTAGGGTAGgtgaatattttgaatttgtgtCGAAAAAAGATATT TGCCGTAATTTGGATTACAAACGGCCGTCTTTTAGGCTACGTCATGTTTT CCTTCCTACTAGCGCTGTTTATTACGAAGACTGGTACCTTATCGGctctt tttacaccggcccttattggcgttatttttgggcttgtggcgtaataagg gccggcgttaaaagggccaagattttgcaattttaacctaaaagcggagt taattttttatcattatttctcaattcaaaggattttaggtatgattgga agacaaaaattattatccattgttttactccaaaATCAGGCTGTGatgta ataagggccggcgtttaatgggccggcgttaaattagggccggcgtaaaa agggccgataaggtagtctTTTTGATCGACTATTCGAGCTGTGTGAATC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000723XLOC_000723Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001341-exon-sc0000010-1491911889:311634..312230TCONS_00001341-exon-sc0000010-1491911889:311634..312230Clytia hemisphaericaexon
TCONS_00001341-exon-sc0000010-1510915933:311634..312230TCONS_00001341-exon-sc0000010-1510915933:311634..312230Clytia hemisphaericaexon
TCONS_00001341-exon-sc0000010-1575043694:311634..312230TCONS_00001341-exon-sc0000010-1575043694:311634..312230Clytia hemisphaericaexon
TCONS_00001341-exon-sc0000010-1491911889:312654..313582TCONS_00001341-exon-sc0000010-1491911889:312654..313582Clytia hemisphaericaexon
TCONS_00001341-exon-sc0000010-1510915933:312654..313582TCONS_00001341-exon-sc0000010-1510915933:312654..313582Clytia hemisphaericaexon
TCONS_00001341-exon-sc0000010-1575043694:312654..313582TCONS_00001341-exon-sc0000010-1575043694:312654..313582Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000010supercontigsc0000010:311634..313582 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.293675 0.227651 0.327601 0.467391 0.437723 0.0721264 1.08303 1.64638 0.819517 0.402625 1.66465 0.911217 1.40256 0.986014 0.435133 0.574711 0.148536 0.639933 1.41196 1.73487 0.471017 0.813039 0.341226 0.465841 2.01519 1.28284 0.204546 0.158825 0.697785 0.495831
Blast
BLAST of TCONS_00001341 vs. Swiss-Prot (Human)
Match: FCN2 (Ficolin-2 OS=Homo sapiens GN=FCN2 PE=1 SV=2)

HSP 1 Score: 95.9005 bits (237), Expect = 1.014e-21
Identity = 59/171 (34.50%), Postives = 88/171 (51.46%), Query Frame = 3
Query:  384 TTCKSCLDYSKKGHLKNGVYEVDLLGTRR-DVYCFMEGEGGGWMAFQRRYDGSVSFEDKEWAEYKDGFGDGSGEYWLGLETLHQLTSTQSYDLYARAMDFSGVWESKRFAGFTIGSELMERYKFDFQSIYSGTQYSNHSLFERAKGMKFSTPTRDNDLYTPIPTCAIRFPG 893
            T  ++C D   +GH  +G + + L   R   V C M+ +GGGW  FQRR DGSV F  ++WA YK GFG   GE+WLG + +H LT+  + +L    +DF   ++  ++  F +  E  E+Y     +   G+   + +         FST  +DNDL T    CA+ F G
Sbjct:  100 TGPRTCKDLLDRGHFLSGWHTIYLPDCRPLTVLCDMDTDGGGWTVFQRRVDGSVDFY-RDWATYKQGFGSRLGEFWLGNDNIHALTAQGTSELRVDLVDFEDNYQFAKYRSFKVADE-AEKYNLVLGAFVEGSAGDSLTFHNN---QSFSTKDQDNDLNT--GNCAVMFQG 263          
The following BLAST results are available for this feature:
BLAST of TCONS_00001341 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
FCN21.014e-2134.50Ficolin-2 OS=Homo sapiens GN=FCN2 PE=1 SV=2[more]
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