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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00001341 ID=TCONS_00001341|Name=TCONS_00001341|organism=Clytia hemisphaerica|type=transcript|length=1526bp
caagcaacaaatcataaacaacaaaaaatctGACAAAGAGGAAAAAAGGA
TTCTATTCTCGGAGAATCATGTTTAGAACTGTATTCTTAGGTATTCTGTG
CATTTACTGGTGTGAatgttcaaaacaaatttgGAACCATGCTGCTATTG
GTAAGGCGTACGCCTGGCAGCCTTTTTACGAAGTATCTCTTATGGATGAG
CGACAATGTTTTGGTCAATGCGTTTACAATGAAAAATGTCTCTCATTCGA
GGTTTATCAAACAGTTCCTCGAAAAGTCGAATGtcgattgtttgattttg
tGTACGAGTATTATACCAAATTCAAAGAGTTGGATATGAAAGTGGGGTCA
AAGATCTATTCGAAACCGTTAGAAAAAGTTTGTACGACATGTAAAAGTTG
TCTTGATTATTCAAAAAAAGGACACTTGAAAAATGGCGTTTACGAAGTAG
ATTTGTTAGGAACACGACGTGATGTTTATTGCTTCATGGAAGGCGAGGGC
GGAGGGTGGATGGCGTTTCAAAGGCGTTATGATGGTTCAGTTTCATTTGA
AGATAAAGAATGGGCAGAGTACAAAGATGGATTTGGAGATGGGTCAGGAG
AATATTGGTTAGGTCTTGAAACACTTCATCAGTTGACATCAACGCAATCA
TATGACTTATACGCGAGGGCGATGGATTTTTCCGGTGTTTGGGAGAGCAA
AAGATTCGCCGGTTTTACCATCGGCTCTGAGTTAATGGAGAGATACAAAT
TCGACTTCCAGTCTATCTACAGTGGAACTCAATACAGCAATCATAGTTTA
TTTGAAAGAGCGAAGGGCATGAAATTCAGCACTCCGACCCGTGACAACGA
TTTGTACACACCAATTCCAACTTGTGCTATTAGGTTTCCAGGAGGCAAGC
ATTATACTCTAAGGTCCCAAATAGTAGGAGGGGAGGGAGTCCGGATAAAA
GGGAAGGGTCCCGAAATTTCTTTTGAACCGCGAACCTAATTGGCGGGGCC
AGTCCTGATAAGAAGAAGGGGAGAATTTCATATATTAATAAagttttaat
aaacgggggaagGGGTGCGTTCTTTTCGAGACCTTAGGGTAGgtgaatat
tttgaatttgtgtCGAAAAAAGATATTTGCCGTAATTTGGATTACAAACG
GCCGTCTTTTAGGCTACGTCATGTTTTCCTTCCTACTAGCGCTGTTTATT
ACGAAGACTGGTACCTTATCGGctctttttacaccggcccttattggcgt
tatttttgggcttgtggcgtaataagggccggcgttaaaagggccaagat
tttgcaattttaacctaaaagcggagttaattttttatcattatttctca
attcaaaggattttaggtatgattggaagacaaaaattattatccattgt
tttactccaaaATCAGGCTGTGatgtaataagggccggcgtttaatgggc
cggcgttaaattagggccggcgtaaaaagggccgataaggtagtctTTTT
GATCGACTATTCGAGCTGTGTGAATC Run BLAST on NCBI transcript from alignment at sc0000010:311634..313582+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00001341 ID=TCONS_00001341|Name=TCONS_00001341|organism=Clytia hemisphaerica|type=transcript|length=1949bp|location=Sequence derived from alignment at sc0000010:311634..313582+ (Clytia hemisphaerica)
caagcaacaaatcataaacaacaaaaaatctGACAAAGAGGAAAAAAGGA
TTCTATTCTCGGAGAATCATGTTTAGAACTGTATTCTTAGGTATTCTGTG
CATTTACTGGTGTGAatgttcaaaacaaatttgGAACCATGCTGCTATTG
GTAAGGCGTACGCCTGGCAGCCTTTTTACGAAGTATCTCTTATGGATGAG
CGACAATGTTTTGGTCAATGCGTTTACAATGAAAAATGTCTCTCATTCGA
GGTTTATCAAACAGTTCCTCGAAAAGTCGAATGtcgattgtttgattttg
tGTACGAGTATTATACCAAATTCAAAGAGTTGGATATGAAAGTGGGGTCA
AAGATCTATTCGAAACCGTTAGAAAAAGTTTGTACGACATGTAAAAGTTG
TCTTGATTATTCAAAAAAAGGACACTTGAAAAATGGCGTTTACGAAGTAG
ATTTGTTAGGAACACGACGTGATGTTTATTGCTTCATGGAAGGCGAGGGC
GGAGGGTGGATGGCGTTTCAAAGGCGTTATGATGGTTCAGTTTCATTTGA
AGATAAAGAATGGGCAGAGTACAAAGATGGATTTGGAGATGGGTCAGGTA
AGATATTTCTGAACAagcttttgtaatgaataacaGAAAATCAAACTAAA
AGAAAATCAAGACCAAACTTGATGTTCATTTTACATTCGCAGCATTTAAA
GAAGTactcgtttttttataagaacatccacaaattttgaagccttcgga
tgttctttactttttgagtttcaagcctaaaaatgttcttaatatgttct
taaatTCCCCATTTTGTGAGTGTGAGTGccaattttcttaagaaatcggg
tgttgtccacaaagccttaacatattttcaacttgttcttaacattttag
ccatcgaagccttatgttcttgtatagtttgtttttattttgaaaacgtG
TAGGATAAAGGAAACCTAAATACTCATAGTGCAGAGTTAAAGTTTTCTTC
TTATTTCATCAAATTCACAGGAGAATATTGGTTAGGTCTTGAAACACTTC
ATCAGTTGACATCAACGCAATCATATGACTTATACGCGAGGGCGATGGAT
TTTTCCGGTGTTTGGGAGAGCAAAAGATTCGCCGGTTTTACCATCGGCTC
TGAGTTAATGGAGAGATACAAATTCGACTTCCAGTCTATCTACAGTGGAA
CTCAATACAGCAATCATAGTTTATTTGAAAGAGCGAAGGGCATGAAATTC
AGCACTCCGACCCGTGACAACGATTTGTACACACCAATTCCAACTTGTGC
TATTAGGTTTCCAGGAGGCAAGCATTATACTCTAAGGTCCCAAATAGTAG
GAGGGGAGGGAGTCCGGATAAAAGGGAAGGGTCCCGAAATTTCTTTTGAA
CCGCGAACCTAATTGGCGGGGCCAGTCCTGATAAGAAGAAGGGGAGAATT
TCATATATTAATAAagttttaataaacgggggaagGGGTGCGTTCTTTTC
GAGACCTTAGGGTAGgtgaatattttgaatttgtgtCGAAAAAAGATATT
TGCCGTAATTTGGATTACAAACGGCCGTCTTTTAGGCTACGTCATGTTTT
CCTTCCTACTAGCGCTGTTTATTACGAAGACTGGTACCTTATCGGctctt
tttacaccggcccttattggcgttatttttgggcttgtggcgtaataagg
gccggcgttaaaagggccaagattttgcaattttaacctaaaagcggagt
taattttttatcattatttctcaattcaaaggattttaggtatgattgga
agacaaaaattattatccattgttttactccaaaATCAGGCTGTGatgta
ataagggccggcgtttaatgggccggcgttaaattagggccggcgtaaaa
agggccgataaggtagtctTTTTGATCGACTATTCGAGCTGTGTGAATC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00001341-exon-sc0000010-1491911889:311634..312230 | TCONS_00001341-exon-sc0000010-1491911889:311634..312230 | Clytia hemisphaerica | exon |
| TCONS_00001341-exon-sc0000010-1510915933:311634..312230 | TCONS_00001341-exon-sc0000010-1510915933:311634..312230 | Clytia hemisphaerica | exon |
| TCONS_00001341-exon-sc0000010-1575043694:311634..312230 | TCONS_00001341-exon-sc0000010-1575043694:311634..312230 | Clytia hemisphaerica | exon |
| TCONS_00001341-exon-sc0000010-1491911889:312654..313582 | TCONS_00001341-exon-sc0000010-1491911889:312654..313582 | Clytia hemisphaerica | exon |
| TCONS_00001341-exon-sc0000010-1510915933:312654..313582 | TCONS_00001341-exon-sc0000010-1510915933:312654..313582 | Clytia hemisphaerica | exon |
| TCONS_00001341-exon-sc0000010-1575043694:312654..313582 | TCONS_00001341-exon-sc0000010-1575043694:312654..313582 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000010 | supercontig | sc0000010:311634..313582 + |
Blast
BLAST of TCONS_00001341 vs. Swiss-Prot (Human)
Match: FCN2 (Ficolin-2 OS=Homo sapiens GN=FCN2 PE=1 SV=2) HSP 1 Score: 95.9005 bits (237), Expect = 1.014e-21 Identity = 59/171 (34.50%), Postives = 88/171 (51.46%), Query Frame = 3
Query: 384 TTCKSCLDYSKKGHLKNGVYEVDLLGTRR-DVYCFMEGEGGGWMAFQRRYDGSVSFEDKEWAEYKDGFGDGSGEYWLGLETLHQLTSTQSYDLYARAMDFSGVWESKRFAGFTIGSELMERYKFDFQSIYSGTQYSNHSLFERAKGMKFSTPTRDNDLYTPIPTCAIRFPG 893
T ++C D +GH +G + + L R V C M+ +GGGW FQRR DGSV F ++WA YK GFG GE+WLG + +H LT+ + +L +DF ++ ++ F + E E+Y + G+ + + FST +DNDL T CA+ F G
Sbjct: 100 TGPRTCKDLLDRGHFLSGWHTIYLPDCRPLTVLCDMDTDGGGWTVFQRRVDGSVDFY-RDWATYKQGFGSRLGEFWLGNDNIHALTAQGTSELRVDLVDFEDNYQFAKYRSFKVADE-AEKYNLVLGAFVEGSAGDSLTFHNN---QSFSTKDQDNDLNT--GNCAVMFQG 263
The following BLAST results are available for this feature:
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