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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00001336 ID=TCONS_00001336|Name=TCONS_00001336|organism=Clytia hemisphaerica|type=transcript|length=2965bpRun BLAST on NCBI protein sequence of TCONS_00001336-protein >TCONS_00001336-protein ID=TCONS_00001336-protein|Name=TCONS_00001336-protein|organism=Clytia hemisphaerica|type=polypeptide|length=494bp MASSSMASSIPESTSSVDSSSDNEEMRITQEQREYYTNQFKSLQPNEDDVRun BLAST on NCBI transcript from alignment at sc0000010:226374..238625+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00001336 ID=TCONS_00001336|Name=TCONS_00001336|organism=Clytia hemisphaerica|type=transcript|length=12252bp|location=Sequence derived from alignment at sc0000010:226374..238625+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000010:226374..238625+ >TCONS_00001336 ID=TCONS_00001336|Name=TCONS_00001336|organism=Clytia hemisphaerica|type=CDS|length=13338bp|location=Sequence derived from alignment at sc0000010:226374..238625+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00001336 vs. Swiss-Prot (Human)
Match: REPS2 (RalBP1-associated Eps domain-containing protein 2 OS=Homo sapiens GN=REPS2 PE=1 SV=2) HSP 1 Score: 111.309 bits (277), Expect = 5.639e-25 Identity = 53/92 (57.61%), Postives = 64/92 (69.57%), Query Frame = 3
Query: 1548 NEEMRITQEQREYYTNQFKSLQPNEDDVIKGPQARDFFLKSNLAMETLSKIWHLSDLDKDGALNLEEFQIAMHLVVLIKHGYELPMVLPPSL 1823
+E RIT+EQREYY NQF+SLQP+ I G A++FF KS L++ LS IW LSD D DGAL L EF A HL+V K+GY LP LPP+L
Sbjct: 273 DEPWRITEEQREYYVNQFRSLQPDPSSFISGSVAKNFFTKSKLSIPELSYIWELSDADCDGALTLPEFCAAFHLIVARKNGYPLPEGLPPTL 364 The following BLAST results are available for this feature:
BLAST of TCONS_00001336 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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