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TCONS_00001331 (transcript) - C. hemisphaerica

Overview
NameTCONS_00001331
Unique NameTCONS_00001331
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1636

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00001331 ID=TCONS_00001331|Name=TCONS_00001331|organism=Clytia hemisphaerica|type=transcript|length=1636bp
GTTTATACGCTTGATGATTGAAATctatgtttaaagattttttactgctg
aaagtttaaaaaggaagtTTTTTAGGGAAGGctgtttaaggctttttgag
gattttttaaaaaggtttttggGGATTTTGGAAACAAGCCTTAGAATTAT
TCAAAAATGTATGAAGCCTTCCCTATGtcgCAAGACGATCAAGATGATAT
ATATGATACACCAGAAACTGAAGAAATAGCTCGCCCACCACCTCTGCAAC
AGAAACCACAACGTCCAGGAGGGTACGCACGACAACCACAACACCAAACT
CCAATACCACAACACCAATCTCCAATACCACAACACCAATCTCCAATACC
ACAACACCAATCTCCAGCAGCACACCAAGATAACTTCAATATGAGCAATA
AACGCACACAAAACATTGATAAGCATCGTCAACAATCGTTCGCTAATAGT
CGAGCAATGTTCGAACAGAGATCAACTTCACCTCCACAACCAGCTATCAA
TCGATCAGCTAAACCACCTGTACAACAACGTCGAAGTGATTCTAACAATA
ACCCGCCCTTCGCTCCCAAACCCAATATTTCTAAGCGCCCAACGATTCCA
ACGCCAGCAGCGCAACAAAGGGTGGTACCGCCCCAACCGATCCAACTTCA
AGAACCTCAACATTATGAAATGGATAACCAAAGCGAAGACTCGGGCTGCC
ATGAGGACTTTTACATTGAGCCGCATCAAGCCAAAAATGCCGTCATACCC
CACGAAGAAGAAACGTATGAGGTCACAGACGGGCCAACCTCCCCGGTCGA
AATCATATCCTCAAAACCTAAAGGCATGCCTGGTCAGCAATTCATTACAC
AACTAAATCGAATGACCTTAGAAAGATCTGCTCCCTCACTTCCCGCCTCA
CAGAGCAAACCAATGGCTGGAAGACCTCTCGTACCGACCCCAGATCAAGA
AGAAACTTATGAAATCGCACCTGAGAACCCTCGTTCACCACCATTACCCG
GTAACCACCCTTCAGCCGCAAAAAGCCCCGGCATCCCATCTCGACCTTTC
GTTCAGAGCCGGCCACCAATGCCAGTACCATCACCACCACCACAGGAAGA
AGAAACCTATGAAGTGACGCCCGATCAAGCGCCCGCTTTACCACCCTCAC
ATCCTTCCTCGAGAAAATCTTCAAGTACTTCGTCTATAGGGGAATCACCG
AGAACGTCCATTAAAGACAGATTACCAAATCCTCGAGATAACATACAAGA
AGATTATGAGATGATAACTCATAGCCAAAGACCGCCTCCTCAACTTCCTA
TCTCTTCACGTCCATCTCCACCCCAACAAAGGCGCCCACCACCCTCGTTA
GAACCAAAAGcgCGCAACGAGAAACCGCAACGCCTTTTACCCTCGCCTTC
GCAAGAAATCAACATTCCACCCAGAACGCCAAAAATGTCACAACCACAAA
ACTCGATGCCTCCAAAGCTTATGGGAAGTCTACCTACATTCAGTCTAAGC
AACAGCTGGCTCGAAGATGTCAAGTGCGGACAAAGGAAAACCAGCCTCGA
TATGGGTGCCATAAGTCCGAAATTATTTCGTCGTATAAATGACCGTCGTT
CAAGCTTATCTGCCGATGAAATTCAAGTCAATCACT
Run BLAST on NCBI

transcript from alignment at sc0000010:142680..150624+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00001331 ID=TCONS_00001331|Name=TCONS_00001331|organism=Clytia hemisphaerica|type=transcript|length=7945bp|location=Sequence derived from alignment at sc0000010:142680..150624+ (Clytia hemisphaerica)
GTTTATACGCTTGATGATTGAAATctatgtttaaagattttttactgctg aaagtttaaaaaggaagtTTTTTAGGGAAGGctgtttaaggctttttgag gattttttaaaaaggtttttggGGATTTTGGAAACAAGCCTTAGAATTAT TCAAAAATGTATGAAGCCTTCCCTATGGTAAGTGATATTTTGCTTTGAAT TCTTGAAATTATAATCTTAAATCTCTTTTTAGCAGGGGGGGTGTCGGTAC TAAAACccaagacatatatgagtactacaaggttttttgacgatttttga cataccctcacctaatttttgaaaaaggaattttagtacacatgtactga aatttatttttacattttagcaTAGTGACCACCTAAATAAGGCTTATTTT GGAATTCGGTTCGAAGAATGTGGGTCTttggactttcaacaaaatgccAA CTCTGGTTATTTAAGCTGTCAATGAACCTGATATATCTCTATCTATTCTA GATAAAGACTCAGAAACAGTCAAGACACTTTTGCCCTGCTCTACTTTAGT TATTGCAAAGATTGATGGGTTATTTTTCACCTCTAATTTACAGAggaacc tttttcctcagttgagataaaaatttcctattgaaatattaatggggata caaattctattgttccaaggttaaaaacccagtggggatatgattttgga gtgcaatttttacacatggaattttgagtggggatgaaatcaaagtcaat ttcccagtagggctgaaattcaagggtattctaccaccggggacaaaatt tttgcttaatttgtgacacagggacgtatttaaatcttatatagagagtt tttattttttcattttgcctaaaatgctcAGTNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNtagttaaatttcctaaaatttg gtgatttttagtactcatgtattaaaatttttcttaaatttcttgaagac ccccacctaatttgggattttagtacacatggtactaaaatgcttttagg ctttttttgtaataccaccacgtcactaaaagtcatgatgtctgaaattt tagtaccgacccccccccctctttttaGCTAAATTTATAGTTTTTCACAC AAAGACtataagctctagtttagacggccgactttctgccctgtctattc taattgttagagtaggcagaagtTGGGCAAAAAGTTGGCAGctaaagaca ttgcattgacgtcaaaagagggcgatgcattgactttagacggcccactt tatgcccactttgattcacaattagaatagacagggcaaaaagtgggctg tctaaactagagctaagctCGTCTGAAAGGGTAAAAGAAAATTGTCAATA CTTTGTATGTATTGTCAGTACCTGGTAACTTTCAGTTTCGGAAATTTTCA ATGTCATTATTAAGTATTCTACTCATTTTATCTTGAATTTGGTCACAACT TTCATTTAGTATTGGCGTCATAAATGAGGTATTATTTCCTTGAAAGTTTG TGAGAGATCTATGGGCCTGTGTCAAAAAATGTTGCCTTTGAAGTAGGTTT AAAGCATTTTGTACATTTACGACGAATCTTTGTTAAAAAACAATAGGccg caaaattaaacaccttttttgacaacaaataatatgcccataacttttga tctagagaagttgggattTTGAtgcaatacacttttttgctcagtttgaa gagttCTTACGTAGTATAGGTcttctttgattttgaagacccccaaaaat catgaattttctgacctttcaattttgtttggaaacgcaaaaaatcgaaa attatgcAAAAACTGCAGTTTTTCAAggttggtaacattcaaattccgaa tcagcaccctcaaattgaccaaaatcaatCATGAaaggacattttgaaaa aaagtgaaacgttttggtGGCACTGCACTGGCCTACAAGTTTCCATTTCA ATAGAGGGAAAGGTAATGATGTTTATCTCTAAGCAATTATAAATGAACGA TCTTAAAGCAGTAAATTGCTTTTATAAATGGTTTTGAAATTAGCTAACCG CGTCTTCTGAAATGATTTCTATTAACTTAAATTAAGTTTTGGCTCCTATG TCATATGATACGTTTCGTTTAAAAGAACATAGGCGGACAGTTTTATCATG AAATTTAAATTGATAGAGATATTGTTAAGTAATCTGGTCTATTGAAAACA ACTTTTTAGCGTTCATTATCTGTAGAAAATAGATTGTAATCAAAGTCACA GCTTaggttgtctgtacacagacccgatatctacggctaatttcaaaaat tcatttccgtagacaaacgtgagatacactctggtacagagtacagCTTA GGGATCTGGATATTACTTTTGCTTTTTGCGTTTTGTTCCTATTTCGAATT TAATCAGGTATAGATATTCTGTGATTGAAATATCTCAATTCTGCCCAATT TAGTAACTATTACTGCTACTTTAATCATATAGCTTTCGTGcttaatattt ttggaaaatagtttTGGAAGCCCTAGCGAATTTATTGTATTGTGTTAGCA TCTTGAAGACATGGTTTTATGGGATTTGATTGTCTCAATTCTGCTATAAT TTAGTAAAAAATTTACTTCAATATACTTCACTCGTATAGCTTTTGTGCTC AATGTTTTATGtaggaatacacgtttttttataagaacaaactatataag aacataaggcttcactggccaaaatgttaagagcaagttaagaacatttt aaggctttgtggactcaaaaccacccaatttcttaggaaaatagtcaaaa ttattcacaaaatggtcaaaataagaacatgttcagaacaattttaggct taaaactcaaaaagttcagaacattcaaggcttcaaaaaatttggatgtt tttataaaaaaaacgcgtAGTCCTGGTAACCCTAGCAAATTTACTTGTAT TTTCTCAATATCTTTACTttccttttctttatttttcatttatcacattt ttttttcagtcgCAAGACGATCAAGATGATATATATGATACACCAGAAAC TGAAGAAATAGGTTGGTGTATTTGTATTTAAAGTTCTTGACTAGCATAAT TGAATGTCCAAGTTATTTTGTGACCAGCCAAAAGTATAGTTTTttattct gtttgttttttttatacaaGTTCGTCAAAATTAGACGATATGTGGCGACT AGGACAGAAATAATTTGATATTGAACGAAAACAACTATGATGATCAGTTA ATcatggaaaaattttaaaccccaGATCAAAATATTATTCAGGAATATTA TTACAGTCTTGGTCAACTTAATGTATACACCGAATGTCAAAGTTTGAAAC AGTCCATTTTTCATACTTTCGATTCAACTTTTACAGCTCGCCCACCACCT CTGCAACAGAAACCACAACGTCCAGGAGGGTACGCACGACAACCACAACA CCAAACTCCAATACCACAACACCAATCTCCAATACCACAACACCAATCTC CAATACCACAACACCAATCTCCAGCAGCACACCAAGATAACTTCAATATG AGCAATAAACGCACACAAAACATTGATAAGCATCGTCAACAATCGTTCGC TAATAGTCGAGCAATGTTCGAACAGAGATCAACTTCACCTCCACAACCAG CTATCAATCGATCAGCTAAACCACCTGTACAACAACGTCGAAGTGATTCT AACAATAACCCGCCCTTCGCTCCCAAACCCAATATTTCTAAGCGCCCAAC GATTCCAACGCCAGCAGCGCAACAAAGGGTGGTACCGCCCCAACCGATCC AACTTCAAGAACCTCAACATTATGAAATGGATAACCAAAGCGAAGACTCG GGCTGCCATGAGGACTTTTACATTGAGCCGCATCAAGCCAAAAATGCCGT CATACCCCACGAAGAAGAAACGTATGAGGTCACAGACGGGCCAACCTCCC CGGTCGAAATCATATCCTCAAAACCTAAAGGCATGCCTGGTCAGCAATTC ATTACACAACTAAATCGAATGACCTTAGAAAGATCTGCTCCCTCACTTCC CGCCTCACAGAGCAAACCAATGGCTGGAAGACCTCTCGTACCGACCCCAG ATCAAGAAGAAACTTATGAAATCGCACCTGAGAACCCTCGTTCACCACCA TTACCCGGTAACCACCCTTCAGCCGCAAAAAGCCCCGGCATCCCATCTCG ACCTTTCGTTCAGAGCCGGCCACCAATGCCAGTACCATCACCACCACCAC AGGAAGAAGAAACCTATGAAGTGACGCCCGATCAAGCGCCCGCTTTACCA CCCTCACATCCTTCCTCGAGAAAATCTTCAAGTACTTCGTCTATAGGTaa gtaaaagagaaaaaaatttgccaGCCTGGTGATCTTTCTGGTTACTGTGA ACATCACAGTTTGGTTTTTTCTGAAATTNAATTTGCCAACCTGGTGATCT TTCTGGTTACTGTGAACATCACAGTTtggttttttctgaaatttaacCTT GTGAGGACGGACAATTTTATCGCGTATGTCTCATCACATTTCTGATCATA TAATGGAGAGCACGTATCCTCGTGTTATGTTCTAGCAGGTTACATCTTTA TATATGTGAAAAAGTAAGAATTTCTCTCcgactatattcactcaggagat ttgggtggcagagcagcatatgcatttcgtccttattgaGACTCATCCAT CAGATATATATCTATCAGTGAATTGAGTTTCCTTCAAAAGAACTCCTATC TTGTGATTTGATTGATTAAGCCTTCATCAAAAATATCCTGGATAATAATT GTGGCGTGCAACTTAGTGTCCGGTATCACAGCCTGCAGTTTCATTTCTCG TCTAATTTGGaactagcctagttaactaagcctgtattcacaaggctagg ataCACCGCTAATGGCAATATAGcattttcggcgctttaaagatttttta tatttacggattttatgtttgccttggaatactggtAATTCAGTTACAag ttaccatcagatttatcctagtgactgaatcaaaccaGTTTAGATTTCTA GGCTTATTTGGAGCTAGGTGGTAATAATATCTAAGCAGGTCATAAACTAT TCGATTCATTCTACCATCATCTATCTTCTAATACCTACAGGGGAATCACC GAGAACGTCCATTAAAGACAGATTACCAAATCCTCGAGATAACATACAAG AAGATTATGAGATGATAACTCATAGCCAAAGACCGCCTCCTCAACTTCCT ATCTCTTCACGTCCATCTCCACCCCAACAAAGGCGCCCACCACCCTCGTT AGAACCAAAAGGTAATGATCATTCTTCTCgttgaatttctttttgtacTT GCAGGTGTGTAGCAACTTATTCACATTCTTTACCAAGTAGGATGTTTAGG ACATTCATTATATTCCAGATTTTTCCacgaaaaagttgattttgtattgg aaatccaggagttacaaaaaacattttacctTAGAAATCCGCtatcgtcc accccctgtatgctGTTTCTCAACAGCATTTCttcaactcaaaatttcag aaaaaaaacttttatccaCTGACATTggaattatttttctaaaatttaaa gtGAATTTTCGTGAGGGGTATTGAAACTCTAGAAACTATGATCATTAATA TTTTGGGGAATGAAAAATAGGATTCTGTTGATATGTTGATTCTTTGTATA CAAAGAGAAAACACAAGTTGACATGCATGATAtcgttaatatttttttgt tgctttttaagGTCAAGAACCTGTATTACCTCGTAAgcataaatatttat atttcattattttgtaaGCTAAGTCGAGTCTTCATGGTCCCTTACttata aagattttgttttaaaaaaaaactacgaACGAGGGGGGGggatttaaaac tttctgatagTTGGTCTTTTATTTTAGCTAGAAAACTTGAGCTTTTGGAA GCCGAAGATAGTGATCTGATGACCCCTGATGCTGTATTGTGCTCCAAAGA ACTTAATATTTCCTTTTCAGCCaaacatattttcaatatatccttcaaaa tatttttcatttcagcgCGCAACGAGAAACCGCAACGCCTTTTACCCTCG CCTTCGCAAGAAATCAACATTCCACCCAGAACGCCAAAAAGTAAGTCAAC TCGTTATATGCACCATAGCAATGTCTTTCACGGACCCaacatctgattgg ttgaaattgacgtattgactgaatttaccaatcagctattggttccgtga tgtaatatcagaagacattgcaatggtgcatgtAATGAATAGGGTGTGTT TATAATTGATTGGTATTTTAAAGACAGGGATATCAATACGCTAACGAAGT TTTTTCTCTGTTGCCATCTTCTGCTCGAGAGAAAGATTCAAAGAAATTGT GTTTTATCTTTGAGACTTTCTGATCTGAAGGTACCAAACTTCACACTACT GATTGTATTATATGCTGCAATTAAAACCATTGTATAACAAAAACCCTCGA CACAAGATTACCTACGAACCAGATTTTGCCAATTCTTTGGGGCGCACATG GTttatacccagctggcacacaacgttgtttcaacgttcatctaacgtta tatggacgctgtgaacgttagataaacgtcgaaaaaacgttatgtgccag ctggatAGTAAATACTCTTGAATGATAAGTGAGGGTAATAAATTGTTGGC AATAGATAAATTGGAACATCATGTCTTGTTTCTTTTTCCATACAGTGTCA CAACCACAAAACTCGATGCCTCCAAAGCTTATGGGAAGGTAAGCAAAATA CTGGGTTTTTGAAACTTTGCGTTTGTTCATGGTTCCTTTAGGTACGACAT TTACATAGTTCAGGTGGAAAGCTTTCACGTAACTTTTCGCGAGGttgaaa attcgcgaaaattattAAATAAGTTTTCGTAAAATAAAAGGAGTATGGAA GTCTCTAAGCCATAACGACGTATAATTTGCTGAGATCACCatgtttgaat gaaaaagactttgtagtattattttttgaaaaatacggAGTTAAAAGACA GACCATGtcgtgattttctaaaaaagataatTTGTATGTCTTAAACGTAA AACTTTTGAGATAGATGATGAGTGGCCTAAATAATTATTGTCACGAAGTA GAGCCTTTGCTGAGTACTTTTTCTGTCTCGTTTTTGATGCTCTAAGGATG GTTACTTCCTCGACTTAATGACTATTACTGGGACTTAAACGTCCTTAGAG ATTTTGGAAATTTGGTCTATCAGAATGTTCCTCGTTCTTTTTTACCCTAA TTGAGTCCGGCTGTCCGGTGCGTTTTCTTTTTAATCGTTTTctttcactg acctttatatatccctggaccaagttactcaagcaaaatattatgatcgg agtttttttgaaattggtacccgtgGAGAGGGCGCTAGATCTAGTTTTGC TTGTACATTAATGATGTATCATCGTTTGTCGTAAGGCAAAGTctcaaaca ctacaatggcttctttgagggtaccaactttcaaaaacttcgatcaaagg tGGCGGATATTGCTTGGttcagggatatataaaggtcagtgttttCTATA CAAAAAAATGTAAGGTATCATTTTTATGCAATGAGATCTGCAATATCCAT CTGTGTCTCTTACCCCCGTGACTTACTACCATTGCAGTCTACCTACATTC AGTCTAAGCAACAGCTGGCTCGAAGATGTCAAGTGCGGACAAAGGAAAAC CAGCCTCGATATGGGTGCCATAAGTCCGAAATTATTTCGTCGTATAAATG ACCGTCGTTCAAGCTTATCTGCCGATGAAATTCAAGTCAATCACT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000718XLOC_000718Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001331-exon-sc0000010-1491911889:142680..142856TCONS_00001331-exon-sc0000010-1491911889:142680..142856Clytia hemisphaericaexon
TCONS_00001331-exon-sc0000010-1510915933:142680..142856TCONS_00001331-exon-sc0000010-1510915933:142680..142856Clytia hemisphaericaexon
TCONS_00001331-exon-sc0000010-1575043694:142680..142856TCONS_00001331-exon-sc0000010-1575043694:142680..142856Clytia hemisphaericaexon
TCONS_00001331-exon-sc0000010-1491911889:145789..145840TCONS_00001331-exon-sc0000010-1491911889:145789..145840Clytia hemisphaericaexon
TCONS_00001331-exon-sc0000010-1510915933:145789..145840TCONS_00001331-exon-sc0000010-1510915933:145789..145840Clytia hemisphaericaexon
TCONS_00001331-exon-sc0000010-1575043694:145789..145840TCONS_00001331-exon-sc0000010-1575043694:145789..145840Clytia hemisphaericaexon
TCONS_00001331-exon-sc0000010-1491911889:146166..147125TCONS_00001331-exon-sc0000010-1491911889:146166..147125Clytia hemisphaericaexon
TCONS_00001331-exon-sc0000010-1510915933:146166..147125TCONS_00001331-exon-sc0000010-1510915933:146166..147125Clytia hemisphaericaexon
TCONS_00001331-exon-sc0000010-1575043694:146166..147125TCONS_00001331-exon-sc0000010-1575043694:146166..147125Clytia hemisphaericaexon
TCONS_00001331-exon-sc0000010-1491911889:147920..148090TCONS_00001331-exon-sc0000010-1491911889:147920..148090Clytia hemisphaericaexon
TCONS_00001331-exon-sc0000010-1510915933:147920..148090TCONS_00001331-exon-sc0000010-1510915933:147920..148090Clytia hemisphaericaexon
TCONS_00001331-exon-sc0000010-1575043694:147920..148090TCONS_00001331-exon-sc0000010-1575043694:147920..148090Clytia hemisphaericaexon
TCONS_00001331-exon-sc0000010-1491911889:148845..148919TCONS_00001331-exon-sc0000010-1491911889:148845..148919Clytia hemisphaericaexon
TCONS_00001331-exon-sc0000010-1510915933:148845..148919TCONS_00001331-exon-sc0000010-1510915933:148845..148919Clytia hemisphaericaexon
TCONS_00001331-exon-sc0000010-1575043694:148845..148919TCONS_00001331-exon-sc0000010-1575043694:148845..148919Clytia hemisphaericaexon
TCONS_00001331-exon-sc0000010-1491911889:149525..149567TCONS_00001331-exon-sc0000010-1491911889:149525..149567Clytia hemisphaericaexon
TCONS_00001331-exon-sc0000010-1510915933:149525..149567TCONS_00001331-exon-sc0000010-1510915933:149525..149567Clytia hemisphaericaexon
TCONS_00001331-exon-sc0000010-1575043694:149525..149567TCONS_00001331-exon-sc0000010-1575043694:149525..149567Clytia hemisphaericaexon
TCONS_00001331-exon-sc0000010-1491911889:150467..150624TCONS_00001331-exon-sc0000010-1491911889:150467..150624Clytia hemisphaericaexon
TCONS_00001331-exon-sc0000010-1510915933:150467..150624TCONS_00001331-exon-sc0000010-1510915933:150467..150624Clytia hemisphaericaexon
TCONS_00001331-exon-sc0000010-1575043694:150467..150624TCONS_00001331-exon-sc0000010-1575043694:150467..150624Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000010supercontigsc0000010:142680..150624 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0 0 0 0 0 0.864487 0 3.61477e-10 0 0.0063676 6.51292e-09 0 7.23141e-05 4.5554e-07 0 0 0 0 1.16501e-05 0 0 0 0.0157462 0 2.46401 0 0 0 0 5.54329e-05
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00001331 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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