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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00001331 ID=TCONS_00001331|Name=TCONS_00001331|organism=Clytia hemisphaerica|type=transcript|length=1636bp GTTTATACGCTTGATGATTGAAATctatgtttaaagattttttactgctg aaagtttaaaaaggaagtTTTTTAGGGAAGGctgtttaaggctttttgag gattttttaaaaaggtttttggGGATTTTGGAAACAAGCCTTAGAATTAT TCAAAAATGTATGAAGCCTTCCCTATGtcgCAAGACGATCAAGATGATAT ATATGATACACCAGAAACTGAAGAAATAGCTCGCCCACCACCTCTGCAAC AGAAACCACAACGTCCAGGAGGGTACGCACGACAACCACAACACCAAACT CCAATACCACAACACCAATCTCCAATACCACAACACCAATCTCCAATACC ACAACACCAATCTCCAGCAGCACACCAAGATAACTTCAATATGAGCAATA AACGCACACAAAACATTGATAAGCATCGTCAACAATCGTTCGCTAATAGT CGAGCAATGTTCGAACAGAGATCAACTTCACCTCCACAACCAGCTATCAA TCGATCAGCTAAACCACCTGTACAACAACGTCGAAGTGATTCTAACAATA ACCCGCCCTTCGCTCCCAAACCCAATATTTCTAAGCGCCCAACGATTCCA ACGCCAGCAGCGCAACAAAGGGTGGTACCGCCCCAACCGATCCAACTTCA AGAACCTCAACATTATGAAATGGATAACCAAAGCGAAGACTCGGGCTGCC ATGAGGACTTTTACATTGAGCCGCATCAAGCCAAAAATGCCGTCATACCC CACGAAGAAGAAACGTATGAGGTCACAGACGGGCCAACCTCCCCGGTCGA AATCATATCCTCAAAACCTAAAGGCATGCCTGGTCAGCAATTCATTACAC AACTAAATCGAATGACCTTAGAAAGATCTGCTCCCTCACTTCCCGCCTCA CAGAGCAAACCAATGGCTGGAAGACCTCTCGTACCGACCCCAGATCAAGA AGAAACTTATGAAATCGCACCTGAGAACCCTCGTTCACCACCATTACCCG GTAACCACCCTTCAGCCGCAAAAAGCCCCGGCATCCCATCTCGACCTTTC GTTCAGAGCCGGCCACCAATGCCAGTACCATCACCACCACCACAGGAAGA AGAAACCTATGAAGTGACGCCCGATCAAGCGCCCGCTTTACCACCCTCAC ATCCTTCCTCGAGAAAATCTTCAAGTACTTCGTCTATAGGGGAATCACCG AGAACGTCCATTAAAGACAGATTACCAAATCCTCGAGATAACATACAAGA AGATTATGAGATGATAACTCATAGCCAAAGACCGCCTCCTCAACTTCCTA TCTCTTCACGTCCATCTCCACCCCAACAAAGGCGCCCACCACCCTCGTTA GAACCAAAAGcgCGCAACGAGAAACCGCAACGCCTTTTACCCTCGCCTTC GCAAGAAATCAACATTCCACCCAGAACGCCAAAAATGTCACAACCACAAA ACTCGATGCCTCCAAAGCTTATGGGAAGTCTACCTACATTCAGTCTAAGC AACAGCTGGCTCGAAGATGTCAAGTGCGGACAAAGGAAAACCAGCCTCGA TATGGGTGCCATAAGTCCGAAATTATTTCGTCGTATAAATGACCGTCGTT CAAGCTTATCTGCCGATGAAATTCAAGTCAATCACT Run BLAST on NCBI transcript from alignment at sc0000010:142680..150624+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00001331 ID=TCONS_00001331|Name=TCONS_00001331|organism=Clytia hemisphaerica|type=transcript|length=7945bp|location=Sequence derived from alignment at sc0000010:142680..150624+ (Clytia hemisphaerica) GTTTATACGCTTGATGATTGAAATctatgtttaaagattttttactgctg
aaagtttaaaaaggaagtTTTTTAGGGAAGGctgtttaaggctttttgag
gattttttaaaaaggtttttggGGATTTTGGAAACAAGCCTTAGAATTAT
TCAAAAATGTATGAAGCCTTCCCTATGGTAAGTGATATTTTGCTTTGAAT
TCTTGAAATTATAATCTTAAATCTCTTTTTAGCAGGGGGGGTGTCGGTAC
TAAAACccaagacatatatgagtactacaaggttttttgacgatttttga
cataccctcacctaatttttgaaaaaggaattttagtacacatgtactga
aatttatttttacattttagcaTAGTGACCACCTAAATAAGGCTTATTTT
GGAATTCGGTTCGAAGAATGTGGGTCTttggactttcaacaaaatgccAA
CTCTGGTTATTTAAGCTGTCAATGAACCTGATATATCTCTATCTATTCTA
GATAAAGACTCAGAAACAGTCAAGACACTTTTGCCCTGCTCTACTTTAGT
TATTGCAAAGATTGATGGGTTATTTTTCACCTCTAATTTACAGAggaacc
tttttcctcagttgagataaaaatttcctattgaaatattaatggggata
caaattctattgttccaaggttaaaaacccagtggggatatgattttgga
gtgcaatttttacacatggaattttgagtggggatgaaatcaaagtcaat
ttcccagtagggctgaaattcaagggtattctaccaccggggacaaaatt
tttgcttaatttgtgacacagggacgtatttaaatcttatatagagagtt
tttattttttcattttgcctaaaatgctcAGTNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNtagttaaatttcctaaaatttg
gtgatttttagtactcatgtattaaaatttttcttaaatttcttgaagac
ccccacctaatttgggattttagtacacatggtactaaaatgcttttagg
ctttttttgtaataccaccacgtcactaaaagtcatgatgtctgaaattt
tagtaccgacccccccccctctttttaGCTAAATTTATAGTTTTTCACAC
AAAGACtataagctctagtttagacggccgactttctgccctgtctattc
taattgttagagtaggcagaagtTGGGCAAAAAGTTGGCAGctaaagaca
ttgcattgacgtcaaaagagggcgatgcattgactttagacggcccactt
tatgcccactttgattcacaattagaatagacagggcaaaaagtgggctg
tctaaactagagctaagctCGTCTGAAAGGGTAAAAGAAAATTGTCAATA
CTTTGTATGTATTGTCAGTACCTGGTAACTTTCAGTTTCGGAAATTTTCA
ATGTCATTATTAAGTATTCTACTCATTTTATCTTGAATTTGGTCACAACT
TTCATTTAGTATTGGCGTCATAAATGAGGTATTATTTCCTTGAAAGTTTG
TGAGAGATCTATGGGCCTGTGTCAAAAAATGTTGCCTTTGAAGTAGGTTT
AAAGCATTTTGTACATTTACGACGAATCTTTGTTAAAAAACAATAGGccg
caaaattaaacaccttttttgacaacaaataatatgcccataacttttga
tctagagaagttgggattTTGAtgcaatacacttttttgctcagtttgaa
gagttCTTACGTAGTATAGGTcttctttgattttgaagacccccaaaaat
catgaattttctgacctttcaattttgtttggaaacgcaaaaaatcgaaa
attatgcAAAAACTGCAGTTTTTCAAggttggtaacattcaaattccgaa
tcagcaccctcaaattgaccaaaatcaatCATGAaaggacattttgaaaa
aaagtgaaacgttttggtGGCACTGCACTGGCCTACAAGTTTCCATTTCA
ATAGAGGGAAAGGTAATGATGTTTATCTCTAAGCAATTATAAATGAACGA
TCTTAAAGCAGTAAATTGCTTTTATAAATGGTTTTGAAATTAGCTAACCG
CGTCTTCTGAAATGATTTCTATTAACTTAAATTAAGTTTTGGCTCCTATG
TCATATGATACGTTTCGTTTAAAAGAACATAGGCGGACAGTTTTATCATG
AAATTTAAATTGATAGAGATATTGTTAAGTAATCTGGTCTATTGAAAACA
ACTTTTTAGCGTTCATTATCTGTAGAAAATAGATTGTAATCAAAGTCACA
GCTTaggttgtctgtacacagacccgatatctacggctaatttcaaaaat
tcatttccgtagacaaacgtgagatacactctggtacagagtacagCTTA
GGGATCTGGATATTACTTTTGCTTTTTGCGTTTTGTTCCTATTTCGAATT
TAATCAGGTATAGATATTCTGTGATTGAAATATCTCAATTCTGCCCAATT
TAGTAACTATTACTGCTACTTTAATCATATAGCTTTCGTGcttaatattt
ttggaaaatagtttTGGAAGCCCTAGCGAATTTATTGTATTGTGTTAGCA
TCTTGAAGACATGGTTTTATGGGATTTGATTGTCTCAATTCTGCTATAAT
TTAGTAAAAAATTTACTTCAATATACTTCACTCGTATAGCTTTTGTGCTC
AATGTTTTATGtaggaatacacgtttttttataagaacaaactatataag
aacataaggcttcactggccaaaatgttaagagcaagttaagaacatttt
aaggctttgtggactcaaaaccacccaatttcttaggaaaatagtcaaaa
ttattcacaaaatggtcaaaataagaacatgttcagaacaattttaggct
taaaactcaaaaagttcagaacattcaaggcttcaaaaaatttggatgtt
tttataaaaaaaacgcgtAGTCCTGGTAACCCTAGCAAATTTACTTGTAT
TTTCTCAATATCTTTACTttccttttctttatttttcatttatcacattt
ttttttcagtcgCAAGACGATCAAGATGATATATATGATACACCAGAAAC
TGAAGAAATAGGTTGGTGTATTTGTATTTAAAGTTCTTGACTAGCATAAT
TGAATGTCCAAGTTATTTTGTGACCAGCCAAAAGTATAGTTTTttattct
gtttgttttttttatacaaGTTCGTCAAAATTAGACGATATGTGGCGACT
AGGACAGAAATAATTTGATATTGAACGAAAACAACTATGATGATCAGTTA
ATcatggaaaaattttaaaccccaGATCAAAATATTATTCAGGAATATTA
TTACAGTCTTGGTCAACTTAATGTATACACCGAATGTCAAAGTTTGAAAC
AGTCCATTTTTCATACTTTCGATTCAACTTTTACAGCTCGCCCACCACCT
CTGCAACAGAAACCACAACGTCCAGGAGGGTACGCACGACAACCACAACA
CCAAACTCCAATACCACAACACCAATCTCCAATACCACAACACCAATCTC
CAATACCACAACACCAATCTCCAGCAGCACACCAAGATAACTTCAATATG
AGCAATAAACGCACACAAAACATTGATAAGCATCGTCAACAATCGTTCGC
TAATAGTCGAGCAATGTTCGAACAGAGATCAACTTCACCTCCACAACCAG
CTATCAATCGATCAGCTAAACCACCTGTACAACAACGTCGAAGTGATTCT
AACAATAACCCGCCCTTCGCTCCCAAACCCAATATTTCTAAGCGCCCAAC
GATTCCAACGCCAGCAGCGCAACAAAGGGTGGTACCGCCCCAACCGATCC
AACTTCAAGAACCTCAACATTATGAAATGGATAACCAAAGCGAAGACTCG
GGCTGCCATGAGGACTTTTACATTGAGCCGCATCAAGCCAAAAATGCCGT
CATACCCCACGAAGAAGAAACGTATGAGGTCACAGACGGGCCAACCTCCC
CGGTCGAAATCATATCCTCAAAACCTAAAGGCATGCCTGGTCAGCAATTC
ATTACACAACTAAATCGAATGACCTTAGAAAGATCTGCTCCCTCACTTCC
CGCCTCACAGAGCAAACCAATGGCTGGAAGACCTCTCGTACCGACCCCAG
ATCAAGAAGAAACTTATGAAATCGCACCTGAGAACCCTCGTTCACCACCA
TTACCCGGTAACCACCCTTCAGCCGCAAAAAGCCCCGGCATCCCATCTCG
ACCTTTCGTTCAGAGCCGGCCACCAATGCCAGTACCATCACCACCACCAC
AGGAAGAAGAAACCTATGAAGTGACGCCCGATCAAGCGCCCGCTTTACCA
CCCTCACATCCTTCCTCGAGAAAATCTTCAAGTACTTCGTCTATAGGTaa
gtaaaagagaaaaaaatttgccaGCCTGGTGATCTTTCTGGTTACTGTGA
ACATCACAGTTTGGTTTTTTCTGAAATTNAATTTGCCAACCTGGTGATCT
TTCTGGTTACTGTGAACATCACAGTTtggttttttctgaaatttaacCTT
GTGAGGACGGACAATTTTATCGCGTATGTCTCATCACATTTCTGATCATA
TAATGGAGAGCACGTATCCTCGTGTTATGTTCTAGCAGGTTACATCTTTA
TATATGTGAAAAAGTAAGAATTTCTCTCcgactatattcactcaggagat
ttgggtggcagagcagcatatgcatttcgtccttattgaGACTCATCCAT
CAGATATATATCTATCAGTGAATTGAGTTTCCTTCAAAAGAACTCCTATC
TTGTGATTTGATTGATTAAGCCTTCATCAAAAATATCCTGGATAATAATT
GTGGCGTGCAACTTAGTGTCCGGTATCACAGCCTGCAGTTTCATTTCTCG
TCTAATTTGGaactagcctagttaactaagcctgtattcacaaggctagg
ataCACCGCTAATGGCAATATAGcattttcggcgctttaaagatttttta
tatttacggattttatgtttgccttggaatactggtAATTCAGTTACAag
ttaccatcagatttatcctagtgactgaatcaaaccaGTTTAGATTTCTA
GGCTTATTTGGAGCTAGGTGGTAATAATATCTAAGCAGGTCATAAACTAT
TCGATTCATTCTACCATCATCTATCTTCTAATACCTACAGGGGAATCACC
GAGAACGTCCATTAAAGACAGATTACCAAATCCTCGAGATAACATACAAG
AAGATTATGAGATGATAACTCATAGCCAAAGACCGCCTCCTCAACTTCCT
ATCTCTTCACGTCCATCTCCACCCCAACAAAGGCGCCCACCACCCTCGTT
AGAACCAAAAGGTAATGATCATTCTTCTCgttgaatttctttttgtacTT
GCAGGTGTGTAGCAACTTATTCACATTCTTTACCAAGTAGGATGTTTAGG
ACATTCATTATATTCCAGATTTTTCCacgaaaaagttgattttgtattgg
aaatccaggagttacaaaaaacattttacctTAGAAATCCGCtatcgtcc
accccctgtatgctGTTTCTCAACAGCATTTCttcaactcaaaatttcag
aaaaaaaacttttatccaCTGACATTggaattatttttctaaaatttaaa
gtGAATTTTCGTGAGGGGTATTGAAACTCTAGAAACTATGATCATTAATA
TTTTGGGGAATGAAAAATAGGATTCTGTTGATATGTTGATTCTTTGTATA
CAAAGAGAAAACACAAGTTGACATGCATGATAtcgttaatatttttttgt
tgctttttaagGTCAAGAACCTGTATTACCTCGTAAgcataaatatttat
atttcattattttgtaaGCTAAGTCGAGTCTTCATGGTCCCTTACttata
aagattttgttttaaaaaaaaactacgaACGAGGGGGGGggatttaaaac
tttctgatagTTGGTCTTTTATTTTAGCTAGAAAACTTGAGCTTTTGGAA
GCCGAAGATAGTGATCTGATGACCCCTGATGCTGTATTGTGCTCCAAAGA
ACTTAATATTTCCTTTTCAGCCaaacatattttcaatatatccttcaaaa
tatttttcatttcagcgCGCAACGAGAAACCGCAACGCCTTTTACCCTCG
CCTTCGCAAGAAATCAACATTCCACCCAGAACGCCAAAAAGTAAGTCAAC
TCGTTATATGCACCATAGCAATGTCTTTCACGGACCCaacatctgattgg
ttgaaattgacgtattgactgaatttaccaatcagctattggttccgtga
tgtaatatcagaagacattgcaatggtgcatgtAATGAATAGGGTGTGTT
TATAATTGATTGGTATTTTAAAGACAGGGATATCAATACGCTAACGAAGT
TTTTTCTCTGTTGCCATCTTCTGCTCGAGAGAAAGATTCAAAGAAATTGT
GTTTTATCTTTGAGACTTTCTGATCTGAAGGTACCAAACTTCACACTACT
GATTGTATTATATGCTGCAATTAAAACCATTGTATAACAAAAACCCTCGA
CACAAGATTACCTACGAACCAGATTTTGCCAATTCTTTGGGGCGCACATG
GTttatacccagctggcacacaacgttgtttcaacgttcatctaacgtta
tatggacgctgtgaacgttagataaacgtcgaaaaaacgttatgtgccag
ctggatAGTAAATACTCTTGAATGATAAGTGAGGGTAATAAATTGTTGGC
AATAGATAAATTGGAACATCATGTCTTGTTTCTTTTTCCATACAGTGTCA
CAACCACAAAACTCGATGCCTCCAAAGCTTATGGGAAGGTAAGCAAAATA
CTGGGTTTTTGAAACTTTGCGTTTGTTCATGGTTCCTTTAGGTACGACAT
TTACATAGTTCAGGTGGAAAGCTTTCACGTAACTTTTCGCGAGGttgaaa
attcgcgaaaattattAAATAAGTTTTCGTAAAATAAAAGGAGTATGGAA
GTCTCTAAGCCATAACGACGTATAATTTGCTGAGATCACCatgtttgaat
gaaaaagactttgtagtattattttttgaaaaatacggAGTTAAAAGACA
GACCATGtcgtgattttctaaaaaagataatTTGTATGTCTTAAACGTAA
AACTTTTGAGATAGATGATGAGTGGCCTAAATAATTATTGTCACGAAGTA
GAGCCTTTGCTGAGTACTTTTTCTGTCTCGTTTTTGATGCTCTAAGGATG
GTTACTTCCTCGACTTAATGACTATTACTGGGACTTAAACGTCCTTAGAG
ATTTTGGAAATTTGGTCTATCAGAATGTTCCTCGTTCTTTTTTACCCTAA
TTGAGTCCGGCTGTCCGGTGCGTTTTCTTTTTAATCGTTTTctttcactg
acctttatatatccctggaccaagttactcaagcaaaatattatgatcgg
agtttttttgaaattggtacccgtgGAGAGGGCGCTAGATCTAGTTTTGC
TTGTACATTAATGATGTATCATCGTTTGTCGTAAGGCAAAGTctcaaaca
ctacaatggcttctttgagggtaccaactttcaaaaacttcgatcaaagg
tGGCGGATATTGCTTGGttcagggatatataaaggtcagtgttttCTATA
CAAAAAAATGTAAGGTATCATTTTTATGCAATGAGATCTGCAATATCCAT
CTGTGTCTCTTACCCCCGTGACTTACTACCATTGCAGTCTACCTACATTC
AGTCTAAGCAACAGCTGGCTCGAAGATGTCAAGTGCGGACAAAGGAAAAC
CAGCCTCGATATGGGTGCCATAAGTCCGAAATTATTTCGTCGTATAAATG
ACCGTCGTTCAAGCTTATCTGCCGATGAAATTCAAGTCAATCACT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00001331-exon-sc0000010-1491911889:142680..142856 | TCONS_00001331-exon-sc0000010-1491911889:142680..142856 | Clytia hemisphaerica | exon |
TCONS_00001331-exon-sc0000010-1510915933:142680..142856 | TCONS_00001331-exon-sc0000010-1510915933:142680..142856 | Clytia hemisphaerica | exon |
TCONS_00001331-exon-sc0000010-1575043694:142680..142856 | TCONS_00001331-exon-sc0000010-1575043694:142680..142856 | Clytia hemisphaerica | exon |
TCONS_00001331-exon-sc0000010-1491911889:145789..145840 | TCONS_00001331-exon-sc0000010-1491911889:145789..145840 | Clytia hemisphaerica | exon |
TCONS_00001331-exon-sc0000010-1510915933:145789..145840 | TCONS_00001331-exon-sc0000010-1510915933:145789..145840 | Clytia hemisphaerica | exon |
TCONS_00001331-exon-sc0000010-1575043694:145789..145840 | TCONS_00001331-exon-sc0000010-1575043694:145789..145840 | Clytia hemisphaerica | exon |
TCONS_00001331-exon-sc0000010-1491911889:146166..147125 | TCONS_00001331-exon-sc0000010-1491911889:146166..147125 | Clytia hemisphaerica | exon |
TCONS_00001331-exon-sc0000010-1510915933:146166..147125 | TCONS_00001331-exon-sc0000010-1510915933:146166..147125 | Clytia hemisphaerica | exon |
TCONS_00001331-exon-sc0000010-1575043694:146166..147125 | TCONS_00001331-exon-sc0000010-1575043694:146166..147125 | Clytia hemisphaerica | exon |
TCONS_00001331-exon-sc0000010-1491911889:147920..148090 | TCONS_00001331-exon-sc0000010-1491911889:147920..148090 | Clytia hemisphaerica | exon |
TCONS_00001331-exon-sc0000010-1510915933:147920..148090 | TCONS_00001331-exon-sc0000010-1510915933:147920..148090 | Clytia hemisphaerica | exon |
TCONS_00001331-exon-sc0000010-1575043694:147920..148090 | TCONS_00001331-exon-sc0000010-1575043694:147920..148090 | Clytia hemisphaerica | exon |
TCONS_00001331-exon-sc0000010-1491911889:148845..148919 | TCONS_00001331-exon-sc0000010-1491911889:148845..148919 | Clytia hemisphaerica | exon |
TCONS_00001331-exon-sc0000010-1510915933:148845..148919 | TCONS_00001331-exon-sc0000010-1510915933:148845..148919 | Clytia hemisphaerica | exon |
TCONS_00001331-exon-sc0000010-1575043694:148845..148919 | TCONS_00001331-exon-sc0000010-1575043694:148845..148919 | Clytia hemisphaerica | exon |
TCONS_00001331-exon-sc0000010-1491911889:149525..149567 | TCONS_00001331-exon-sc0000010-1491911889:149525..149567 | Clytia hemisphaerica | exon |
TCONS_00001331-exon-sc0000010-1510915933:149525..149567 | TCONS_00001331-exon-sc0000010-1510915933:149525..149567 | Clytia hemisphaerica | exon |
TCONS_00001331-exon-sc0000010-1575043694:149525..149567 | TCONS_00001331-exon-sc0000010-1575043694:149525..149567 | Clytia hemisphaerica | exon |
TCONS_00001331-exon-sc0000010-1491911889:150467..150624 | TCONS_00001331-exon-sc0000010-1491911889:150467..150624 | Clytia hemisphaerica | exon |
TCONS_00001331-exon-sc0000010-1510915933:150467..150624 | TCONS_00001331-exon-sc0000010-1510915933:150467..150624 | Clytia hemisphaerica | exon |
TCONS_00001331-exon-sc0000010-1575043694:150467..150624 | TCONS_00001331-exon-sc0000010-1575043694:150467..150624 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
sc0000010 | supercontig | sc0000010:142680..150624 + |
Blast
The following BLAST results are available for this feature:
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