TCONS_00001292 (transcript) - C. hemisphaerica

Overview
NameTCONS_00001292
Unique NameTCONS_00001292
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length993

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00001292 ID=TCONS_00001292|Name=TCONS_00001292|organism=Clytia hemisphaerica|type=transcript|length=993bp
AGCATCTCATTTATATCTAATCACAACTCAGTAGAGAGAAGACGTCTCAT
AAGAAAGACAAACAGTCAATCAAAACTAACTATTTCAATTTTGTACAGAA
ATACACTCAAAGAAAATGATTGGAAACTCATTGATGAAGACCGTCGCCAT
CTTGGTTTTATTGTCATGCTTAATGGAGCGAACTGGAGCAAAACCCTCTG
CTATGAAGTTTCTGAAGTTTAAGTGTAACTACAAATGTATGACAGATTTC
GATATGTGTGTATCATTGATTACCACTATGCCGATGTATGTCATCTGCTA
TCGCGCTCAAGGAATATGCAAACGAAGCTGCAAACGAGATTTCGGGAAGA
AGACTAAACGCTCCGTCGGAGACTATCACGCACCTGAAACAACGGTATCA
CCAACATTAAGACACGCCAAGAAGTTGGCGCATCAAAAGGTTCATAAATG
AAGAGATTATGTTACATAAGATGGTTAAGGAGAGTTGATTAtggtgaaaa
gttgaaaaaacacTTTGTTTAACAAGTAATTCATTCATAGTGACAATAAT
TCAtacaaaaatgacattttgtCGTCTGCCTTATCATCATAAGAGCGAAA
TAGTGAGTTCAACAAGGGTCATACACGACAATAAGACATTGAAAAAGGTG
CTTAGCTTCCTCTATTTATTTTCGGAAGGAGACAGTAACTAGGATGTTTA
ATTCCTTTAGCAAGATAAACTTAAAAATGGAATGACATTGTCAAATTGAT
TTATGTGTATTTTCACAAAATAGTAACGTCTATTGAAAAAGACATTCACA
GCATTGATGAATGGACGAAGAAAGTTTCCAAAGGGGATATATTTGCAGAT
TAGATTTAACACTTTATTATTACTGTAGATAATTTGTACATATTTGTTGA
TAGAAGCtattacaaaatttatttatttataatttttttaaatatactat
TTTCAGTTTAAATTTCTCGTttcatattttgtaaaaattggca
Run BLAST on NCBI

protein sequence of TCONS_00001292-protein

>TCONS_00001292-protein ID=TCONS_00001292-protein|Name=TCONS_00001292-protein|organism=Clytia hemisphaerica|type=polypeptide|length=111bp
MIGNSLMKTVAILVLLSCLMERTGAKPSAMKFLKFKCNYKCMTDFDMCVS
LITTMPMYVICYRAQGICKRSCKRDFGKKTKRSVGDYHAPETTVSPTLRH
AKKLAHQKVHK
Run BLAST on NCBI

transcript from alignment at sc0000007:827694..828686

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00001292 ID=TCONS_00001292|Name=TCONS_00001292|organism=Clytia hemisphaerica|type=transcript|length=993bp|location=Sequence derived from alignment at sc0000007:827694..828686 (Clytia hemisphaerica)
tgccaatttttacaaaatatgaaACGAGAAATTTAAACTGAAAatagtat
atttaaaaaaattataaataaataaattttgtaataGCTTCTATCAACAA
ATATGTACAAATTATCTACAGTAATAATAAAGTGTTAAATCTAATCTGCA
AATATATCCCCTTTGGAAACTTTCTTCGTCCATTCATCAATGCTGTGAAT
GTCTTTTTCAATAGACGTTACTATTTTGTGAAAATACACATAAATCAATT
TGACAATGTCATTCCATTTTTAAGTTTATCTTGCTAAAGGAATTAAACAT
CCTAGTTACTGTCTCCTTCCGAAAATAAATAGAGGAAGCTAAGCACCTTT
TTCAATGTCTTATTGTCGTGTATGACCCTTGTTGAACTCACTATTTCGCT
CTTATGATGATAAGGCAGACGacaaaatgtcatttttgtaTGAATTATTG
TCACTATGAATGAATTACTTGTTAAACAAAgtgttttttcaacttttcac
caTAATCAACTCTCCTTAACCATCTTATGTAACATAATCTCTTCATTTAT
GAACCTTTTGATGCGCCAACTTCTTGGCGTGTCTTAATGTTGGTGATACC
GTTGTTTCAGGTGCGTGATAGTCTCCGACGGAGCGTTTAGTCTTCTTCCC
GAAATCTCGTTTGCAGCTTCGTTTGCATATTCCTTGAGCGCGATAGCAGA
TGACATACATCGGCATAGTGGTAATCAATGATACACACATATCGAAATCT
GTCATACATTTGTAGTTACACTTAAACTTCAGAAACTTCATAGCAGAGGG
TTTTGCTCCAGTTCGCTCCATTAAGCATGACAATAAAACCAAGATGGCGA
CGGTCTTCATCAATGAGTTTCCAATCATTTTCTTTGAGTGTATTTCTGTA
CAAAATTGAAATAGTTAGTTTTGATTGACTGTTTGTCTTTCTTATGAGAC
GTCTTCTCTCTACTGAGTTGTGATTAGATATAAATGAGATGCT

Coding sequence (CDS) from alignment at sc0000007:827694..828686

>TCONS_00001292 ID=TCONS_00001292|Name=TCONS_00001292|organism=Clytia hemisphaerica|type=CDS|length=336bp|location=Sequence derived from alignment at sc0000007:827694..828686 (Clytia hemisphaerica)
TCATTTATGAACCTTTTGATGCGCCAACTTCTTGGCGTGTCTTAATGTTG
GTGATACCGTTGTTTCAGGTGCGTGATAGTCTCCGACGGAGCGTTTAGTC
TTCTTCCCGAAATCTCGTTTGCAGCTTCGTTTGCATATTCCTTGAGCGCG
ATAGCAGATGACATACATCGGCATAGTGGTAATCAATGATACACACATAT
CGAAATCTGTCATACATTTGTAGTTACACTTAAACTTCAGAAACTTCATA
GCAGAGGGTTTTGCTCCAGTTCGCTCCATTAAGCATGACAATAAAACCAA
GATGGCGACGGTCTTCATCAATGAGTTTCCAATCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000696XLOC_000696Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001292-proteinTCONS_00001292-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001292-exon-sc0000007-1491911889:827694..828686TCONS_00001292-exon-sc0000007-1491911889:827694..828686Clytia hemisphaericaexon
TCONS_00001292-exon-sc0000007-1510915933:827694..828686TCONS_00001292-exon-sc0000007-1510915933:827694..828686Clytia hemisphaericaexon
TCONS_00001292-exon-sc0000007-1575043694:827694..828686TCONS_00001292-exon-sc0000007-1575043694:827694..828686Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000007supercontigsc0000007:827694..828686 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.044128	0.204948	0.651655	2.25793	1.35024	2.32716	2.01526	0.533864	4.20383	2.70495	0.27124	12.55	12.752	8.83932	9.89958	9.57973	20.4387	23.5229	24.7157	7.39416	7.55468	6.17435	9.24557	7.33638	7.19796	71.1711	43.5735	116.576	100.196
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00001292 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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