TCONS_00001291 (transcript) - C. hemisphaerica

Overview
NameTCONS_00001291
Unique NameTCONS_00001291
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length273

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00001291 ID=TCONS_00001291|Name=TCONS_00001291|organism=Clytia hemisphaerica|type=transcript|length=273bp
ACAATTTTCCAGGACTTTTCAGTGTTTCATCACGAAACTTTCAGTGTTTC
ATTATTAATATATTTCTTtatgaaactaaaaataaaattttctttcttgc
ttTTGAATACAGGCATGAAGGATCCATATTTCAAAAGACGATATTTTTGC
CACCAGTGATCAAGGGTGTTGATGAAAACGTGATTAGTATTTTCCCACTG
CGATACTCTTCGATACTCATTTCTTgagatattgaaaaatatttcaggcc
tCCTTTTCAAAACGCAGTTACCA
Run BLAST on NCBI

transcript from alignment at sc0000007:813840..814112

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00001291 ID=TCONS_00001291|Name=TCONS_00001291|organism=Clytia hemisphaerica|type=transcript|length=273bp|location=Sequence derived from alignment at sc0000007:813840..814112 (Clytia hemisphaerica)
TGGTAACTGCGTTTTGAAAAGGaggcctgaaatatttttcaatatctcAA
GAAATGAGTATCGAAGAGTATCGCAGTGGGAAAATACTAATCACGTTTTC
ATCAACACCCTTGATCACTGGTGGCAAAAATATCGTCTTTTGAAATATGG
ATCCTTCATGCCTGTATTCAAaagcaagaaagaaaattttatttttagtt
tcataAAGAAATATATTAATAATGAAACACTGAAAGTTTCGTGATGAAAC
ACTGAAAAGTCCTGGAAAATTGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000695XLOC_000695Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001291-exon-sc0000007-1491911889:813840..814112TCONS_00001291-exon-sc0000007-1491911889:813840..814112Clytia hemisphaericaexon
TCONS_00001291-exon-sc0000007-1510915933:813840..814112TCONS_00001291-exon-sc0000007-1510915933:813840..814112Clytia hemisphaericaexon
TCONS_00001291-exon-sc0000007-1575043694:813840..814112TCONS_00001291-exon-sc0000007-1575043694:813840..814112Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000007supercontigsc0000007:813840..814112 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	1.28138	0	0	2.93088	1.73702	3.49273	7.19367	0.45786	0.567134	1.65142	0	2.5295	0.669041	0.308525	2.31766	0.815763	0.418065	6.67197	21.9751	0	1.53742	1.24596	1.39283	1.75007	2.03178	3.66733	0	0.926182	0.46251
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00001291 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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