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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00001281 ID=TCONS_00001281|Name=TCONS_00001281|organism=Clytia hemisphaerica|type=transcript|length=1218bp
TGTCAAATTAGTGTGGTCAGATAGTCAAAACATACTTAcagaaaatgaaa
ttacttGCAATATAGAGTTGTTAGATGAGATATAAGATTTGTTTGTCAAC
ACTCAAAGCATTTCAAAAAGACTGATATCCAACAAAGACTGATATTTCTT
GCTTTGTTTTCTCGATTTTTTCTAATTCTTCACCATGCATCGACACGATG
ACTTTCTGTAAGTAATTCTGTAATATAAACGACATTTTGTTAATGTTACC
CTAAATTCACGCCAATGACTCAACTGTGAGTGTAACATTTAGCAAAATTC
TTTAtaaactatttttttatttcagttacAAGATGGCATTGAACAAATCA
TTCGACGACACTGATTCAGGAGCACCCTCAAAACATGCTGACCTTAAACA
TCTTCAGGAAAACTATGACAAAATCACAGACACAAAACTCCCTGAAAATC
TACACCGTGGTGACATCACAACTGTCAACCGTTTCCTTGGTTACCATGAT
GCCATGATGGCTACCTGTGGGACTTTTCTAATTTTACCATTACGTAATCT
TAAAAATATGGTGAAAACTGACGAATATGAAGAGTTGAAAGCGAAACACA
AACTACCCCATGATCCGATCGTTGTCGAGGATTTAGCTGGTTATCTGGAC
GCAATGAAAACTGAATTTATCATGTTCTTCCTTGGTTTTCTCATTATATG
CACGATTTGGGAGACCAACATCATTCGAACGAACGTCATCAAAAGATTCG
ATGATTTCATGGTTATGCTTGGACTTTTCCAAATGGCAGCCATTGTGGTT
CTTCCTTTTTCAATTTCGTTGATGGGTCATTATCCAGAAGATGACGTAAC
GATCATTTCAACAATGGTGGTTTTGATGATTATATATGTTCTGGAATTGG
TGATGATTTTGTACGGATTCTATTGTCCTCGTTTGTTGAACATGGCAATG
AGAGATTGGACTAATAAAGAGGTTAGAGGTTTCATGCTAAGGATGTGCAT
TAAGCCAATTGCTGAAATAGTTTTGGTGGGCGTTGCAGGTGCTTTCAGCC
TTCTACAAAATCACGTGGCCTGGGGACTGCTAGCCTTGTTGATTATAGTA
CCGCTGATCCGTAAGTTCGTATATTTCTATCGACGTCGTCGTGCCGAAAA
GACCAAGGTTCAAAAATGTCGTTTCTACTATTTCTTCACGAAAGGACAGA
TCAGTAAAGAGAGAGTAG Run BLAST on NCBI protein sequence of TCONS_00001281-protein >TCONS_00001281-protein ID=TCONS_00001281-protein|Name=TCONS_00001281-protein|organism=Clytia hemisphaerica|type=polypeptide|length=295bp
MALNKSFDDTDSGAPSKHADLKHLQENYDKITDTKLPENLHRGDITTVNR
FLGYHDAMMATCGTFLILPLRNLKNMVKTDEYEELKAKHKLPHDPIVVED
LAGYLDAMKTEFIMFFLGFLIICTIWETNIIRTNVIKRFDDFMVMLGLFQ
MAAIVVLPFSISLMGHYPEDDVTIISTMVVLMIIYVLELVMILYGFYCPR
LLNMAMRDWTNKEVRGFMLRMCIKPIAEIVLVGVAGAFSLLQNHVAWGLL
ALLIIVPLIRKFVYFYRRRRAEKTKVQKCRFYYFFTKGQISKERV Run BLAST on NCBI transcript from alignment at sc0000007:659001..660218 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00001281 ID=TCONS_00001281|Name=TCONS_00001281|organism=Clytia hemisphaerica|type=transcript|length=1218bp|location=Sequence derived from alignment at sc0000007:659001..660218 (Clytia hemisphaerica)
CTACTCTCTCTTTACTGATCTGTCCTTTCGTGAAGAAATAGTAGAAACGA
CATTTTTGAACCTTGGTCTTTTCGGCACGACGACGTCGATAGAAATATAC
GAACTTACGGATCAGCGGTACTATAATCAACAAGGCTAGCAGTCCCCAGG
CCACGTGATTTTGTAGAAGGCTGAAAGCACCTGCAACGCCCACCAAAACT
ATTTCAGCAATTGGCTTAATGCACATCCTTAGCATGAAACCTCTAACCTC
TTTATTAGTCCAATCTCTCATTGCCATGTTCAACAAACGAGGACAATAGA
ATCCGTACAAAATCATCACCAATTCCAGAACATATATAATCATCAAAACC
ACCATTGTTGAAATGATCGTTACGTCATCTTCTGGATAATGACCCATCAA
CGAAATTGAAAAAGGAAGAACCACAATGGCTGCCATTTGGAAAAGTCCAA
GCATAACCATGAAATCATCGAATCTTTTGATGACGTTCGTTCGAATGATG
TTGGTCTCCCAAATCGTGCATATAATGAGAAAACCAAGGAAGAACATGAT
AAATTCAGTTTTCATTGCGTCCAGATAACCAGCTAAATCCTCGACAACGA
TCGGATCATGGGGTAGTTTGTGTTTCGCTTTCAACTCTTCATATTCGTCA
GTTTTCACCATATTTTTAAGATTACGTAATGGTAAAATTAGAAAAGTCCC
ACAGGTAGCCATCATGGCATCATGGTAACCAAGGAAACGGTTGACAGTTG
TGATGTCACCACGGTGTAGATTTTCAGGGAGTTTTGTGTCTGTGATTTTG
TCATAGTTTTCCTGAAGATGTTTAAGGTCAGCATGTTTTGAGGGTGCTCC
TGAATCAGTGTCGTCGAATGATTTGTTCAATGCCATCTTgtaactgaaat
aaaaaaatagtttaTAAAGAATTTTGCTAAATGTTACACTCACAGTTGAG
TCATTGGCGTGAATTTAGGGTAACATTAACAAAATGTCGTTTATATTACA
GAATTACTTACAGAAAGTCATCGTGTCGATGCATGGTGAAGAATTAGAAA
AAATCGAGAAAACAAAGCAAGAAATATCAGTCTTTGTTGGATATCAGTCT
TTTTGAAATGCTTTGAGTGTTGACAAACAAATCTTATATCTCATCTAACA
ACTCTATATTGCaagtaatttcattttctgTAAGTATGTTTTGACTATCT
GACCACACTAATTTGACA Coding sequence (CDS) from alignment at sc0000007:659001..660218 >TCONS_00001281 ID=TCONS_00001281|Name=TCONS_00001281|organism=Clytia hemisphaerica|type=CDS|length=885bp|location=Sequence derived from alignment at sc0000007:659001..660218 (Clytia hemisphaerica)
TACTCTCTCTTTACTGATCTGTCCTTTCGTGAAGAAATAGTAGAAACGAC
ATTTTTGAACCTTGGTCTTTTCGGCACGACGACGTCGATAGAAATATACG
AACTTACGGATCAGCGGTACTATAATCAACAAGGCTAGCAGTCCCCAGGC
CACGTGATTTTGTAGAAGGCTGAAAGCACCTGCAACGCCCACCAAAACTA
TTTCAGCAATTGGCTTAATGCACATCCTTAGCATGAAACCTCTAACCTCT
TTATTAGTCCAATCTCTCATTGCCATGTTCAACAAACGAGGACAATAGAA
TCCGTACAAAATCATCACCAATTCCAGAACATATATAATCATCAAAACCA
CCATTGTTGAAATGATCGTTACGTCATCTTCTGGATAATGACCCATCAAC
GAAATTGAAAAAGGAAGAACCACAATGGCTGCCATTTGGAAAAGTCCAAG
CATAACCATGAAATCATCGAATCTTTTGATGACGTTCGTTCGAATGATGT
TGGTCTCCCAAATCGTGCATATAATGAGAAAACCAAGGAAGAACATGATA
AATTCAGTTTTCATTGCGTCCAGATAACCAGCTAAATCCTCGACAACGAT
CGGATCATGGGGTAGTTTGTGTTTCGCTTTCAACTCTTCATATTCGTCAG
TTTTCACCATATTTTTAAGATTACGTAATGGTAAAATTAGAAAAGTCCCA
CAGGTAGCCATCATGGCATCATGGTAACCAAGGAAACGGTTGACAGTTGT
GATGTCACCACGGTGTAGATTTTCAGGGAGTTTTGTGTCTGTGATTTTGT
CATAGTTTTCCTGAAGATGTTTAAGGTCAGCATGTTTTGAGGGTGCTCCT
GAATCAGTGTCGTCGAATGATTTGTTCAATGCCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00001281-exon-sc0000007-1491911889:659001..660218 | TCONS_00001281-exon-sc0000007-1491911889:659001..660218 | Clytia hemisphaerica | exon |
| TCONS_00001281-exon-sc0000007-1510915933:659001..660218 | TCONS_00001281-exon-sc0000007-1510915933:659001..660218 | Clytia hemisphaerica | exon |
| TCONS_00001281-exon-sc0000007-1575043694:659001..660218 | TCONS_00001281-exon-sc0000007-1575043694:659001..660218 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000007 | supercontig | sc0000007:659001..660218 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR010617 | TMEM175 |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005267 | potassium channel activity |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0005267 |
potassium channel activity |
Blast
The following BLAST results are available for this feature:
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