Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00001278 ID=TCONS_00001278|Name=TCONS_00001278|organism=Clytia hemisphaerica|type=transcript|length=1733bp
TGTTATGGCCATGAAAATAGAAAACGTCTCATATATGAATTTTAAGATCA
TCTttcattttaacattttattttacaacGTATTTATAGTCTTACAAATA
TATACAGTCCTTAGtgatttaaaaactttaaaatattaTCTACATAGGTT
GCAACAACTCTGCATTGACTCTGTCTTTACCATGATGATCAGAAGCCAAG
AAAATGAAACTATCTTCAGAGGTGATTGGGCCTGTTAACCAAAATCAAAC
GAAGTATTCAGCTATAGTCTTTTCACTATCCTTTGTTTTGGTCATTGTAG
CGTCCTGGTTATTATTGTTCGAGTCAGTCGTATTCAAATTAATTTCGCGC
AAATCGACATCACTTGGTACTCGTATTTTGATATAACCACCTTTACATTT
GTTGATTTCGTTCTGTAAATTATCTATGTCTAACTCTCCCGATTCGTTGA
GTGAAATATCGATGGTTTTCACGCGACTACATTGTTCGATATCCGTGAAT
TTGTATAGCTTGCGTTCATCTCGTGTGTTGTATTTCAAATTCCATTCTTC
GACTTCGTTCAAAATCTTCTGCAAGTCGTTCAAAGGGTTCTCTTCCCTCT
TCTCAACTAAAACGTTATTTGCGAAGATAGGTTCAGTATTTTCGTGTTCA
TATTTGTTCCTCATGTTGACCGACGTGTTTGTTCAGTGTCACCCCTCAAC
GAATgattaaaatttgaatgttCTCTTTTCTGCTTGTTTAAATACCTTTT
AGTTCGTTCTAATTACTCGATCATTAACAGTAATTATGCTATGTGTCGTC
ACTCTTCCCTTGTCAGCAACAAAGTAGCAAATGAACTTCTCCTCTTAATT
TTCCTCGATGTCAAACGTTGAACGAATCCTTCCAGTGAGGAAACTTTGTT
ATGGATGGAACCGCAAAACTCGACACTACTTCCGTCTTATGGCTCACAAG
TAAAGGAGTGGATTTTTCTTTCACCTCTCTCACTCACTCACGCTTGGTGA
GTGTATTTACGATGGATGAAACTCTCCGTCCTGTCGCCTGATTATGAATA
AGACTGTTCAGTTCAATTGAGATCGTTCAATAATAGAGATGCCTGCCTCT
TTTGATGGCttctttcttttattcaatactGCTGTTTGTGttgtaatgaa
atcttttttttgaatATGTGAAAGATCTAAATCAAAACAGATTTCATTTG
ATAAGACGATTATtatcaaaagttgaaagaaaGGCGCGTGATGCATCCAA
CCCAGTTCTCANTCTAAATCAAAACAGATTTCATTTGATAAGACGATTAT
tatcaaaagttgaaagaaaGGCGCGTGATGCATCCAACCCAATTCTcata
atgatgacgtcaccataAGAGTGTCATACATCCATCATTTTATTTTCTAC
TTCTTTACTTTCTGCTTTTTCTCATTTCTGCAACAGAAGCGATTCATTTC
GTAATTTTTTTCTTACCAGCTCTAAGTCAAGGAAGTTCAAACCTGTATGC
TTAGTTTTCATGCTATGTACTGCAATAAAAGAGAATGAAGAAAACTAGCC
TGATCACACTCAGACAATGAAAACACAATTTTTCAGAGCACCTGATCTAG
CGCCAGACAGACTANAATTTTTCAGAGCACCTGATCTAGCGACAGACAGA
CTGACCATTGTGACCATACAACTAATGAGCAATTACTAGTGTCGACAGAC
ACCTTGCAAACCGTCGACTTTCTTTTCGTCACA Run BLAST on NCBI protein sequence of TCONS_00001278-protein >TCONS_00001278-protein ID=TCONS_00001278-protein|Name=TCONS_00001278-protein|organism=Clytia hemisphaerica|type=polypeptide|length=139bp
MRNKYEHENTEPIFANNVLVEKREENPLNDLQKILNEVEEWNLKYNTRDE
RKLYKFTDIEQCSRVKTIDISLNESGELDIDNLQNEINKCKGGYIKIRVP
SDVDLREINLNTTDSNNNNQDATMTKTKDSEKTIAEYFV Run BLAST on NCBI transcript from alignment at sc0000007:264677..266409 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00001278 ID=TCONS_00001278|Name=TCONS_00001278|organism=Clytia hemisphaerica|type=transcript|length=1733bp|location=Sequence derived from alignment at sc0000007:264677..266409 (Clytia hemisphaerica)
TGTGACGAAAAGAAAGTCGACGGTTTGCAAGGTGTCTGTCGACACTAGTA
ATTGCTCATTAGTTGTATGGTCACAATGGTCAGTCTGTCTGTCGCTAGAT
CAGGTGCTCTGAAAAATTNTAGTCTGTCTGGCGCTAGATCAGGTGCTCTG
AAAAATTGTGTTTTCATTGTCTGAGTGTGATCAGGCTAGTTTTCTTCATT
CTCTTTTATTGCAGTACATAGCATGAAAACTAAGCATACAGGTTTGAACT
TCCTTGACTTAGAGCTGGTAAGAAAAAAATTACGAAATGAATCGCTTCTG
TTGCAGAAATGAGAAAAAGCAGAAAGTAAAGAAGTAGAAAATAAAATGAT
GGATGTATGACACTCTtatggtgacgtcatcattatgAGAATTGGGTTGG
ATGCATCACGCGCCtttctttcaacttttgataATAATCGTCTTATCAAA
TGAAATCTGTTTTGATTTAGANTGAGAACTGGGTTGGATGCATCACGCGC
CtttctttcaacttttgataATAATCGTCTTATCAAATGAAATCTGTTTT
GATTTAGATCTTTCACATattcaaaaaaaagatttcattacaaCACAAAC
AGCagtattgaataaaagaaagaaGCCATCAAAAGAGGCAGGCATCTCTA
TTATTGAACGATCTCAATTGAACTGAACAGTCTTATTCATAATCAGGCGA
CAGGACGGAGAGTTTCATCCATCGTAAATACACTCACCAAGCGTGAGTGA
GTGAGAGAGGTGAAAGAAAAATCCACTCCTTTACTTGTGAGCCATAAGAC
GGAAGTAGTGTCGAGTTTTGCGGTTCCATCCATAACAAAGTTTCCTCACT
GGAAGGATTCGTTCAACGTTTGACATCGAGGAAAATTAAGAGGAGAAGTT
CATTTGCTACTTTGTTGCTGACAAGGGAAGAGTGACGACACATAGCATAA
TTACTGTTAATGATCGAGTAATTAGAACGAACTAAAAGGTATTTAAACAA
GCAGAAAAGAGaacattcaaattttaatcATTCGTTGAGGGGTGACACTG
AACAAACACGTCGGTCAACATGAGGAACAAATATGAACACGAAAATACTG
AACCTATCTTCGCAAATAACGTTTTAGTTGAGAAGAGGGAAGAGAACCCT
TTGAACGACTTGCAGAAGATTTTGAACGAAGTCGAAGAATGGAATTTGAA
ATACAACACACGAGATGAACGCAAGCTATACAAATTCACGGATATCGAAC
AATGTAGTCGCGTGAAAACCATCGATATTTCACTCAACGAATCGGGAGAG
TTAGACATAGATAATTTACAGAACGAAATCAACAAATGTAAAGGTGGTTA
TATCAAAATACGAGTACCAAGTGATGTCGATTTGCGCGAAATTAATTTGA
ATACGACTGACTCGAACAATAATAACCAGGACGCTACAATGACCAAAACA
AAGGATAGTGAAAAGACTATAGCTGAATACTTCGTTTGATTTTGGTTAAC
AGGCCCAATCACCTCTGAAGATAGTTTCATTTTCTTGGCTTCTGATCATC
ATGGTAAAGACAGAGTCAATGCAGAGTTGTTGCAACCTATGTAGAtaata
ttttaaagtttttaaatcaCTAAGGACTGTATATATTTGTAAGACTATAA
ATACgttgtaaaataaaatgttaaaatgaaAGATGATCTTAAAATTCATA
TATGAGACGTTTTCTATTTTCATGGCCATAACA Coding sequence (CDS) from alignment at sc0000007:264677..266409 >TCONS_00001278 ID=TCONS_00001278|Name=TCONS_00001278|organism=Clytia hemisphaerica|type=CDS|length=420bp|location=Sequence derived from alignment at sc0000007:264677..266409 (Clytia hemisphaerica)
ATGAGGAACAAATATGAACACGAAAATACTGAACCTATCTTCGCAAATAA
CGTTTTAGTTGAGAAGAGGGAAGAGAACCCTTTGAACGACTTGCAGAAGA
TTTTGAACGAAGTCGAAGAATGGAATTTGAAATACAACACACGAGATGAA
CGCAAGCTATACAAATTCACGGATATCGAACAATGTAGTCGCGTGAAAAC
CATCGATATTTCACTCAACGAATCGGGAGAGTTAGACATAGATAATTTAC
AGAACGAAATCAACAAATGTAAAGGTGGTTATATCAAAATACGAGTACCA
AGTGATGTCGATTTGCGCGAAATTAATTTGAATACGACTGACTCGAACAA
TAATAACCAGGACGCTACAATGACCAAAACAAAGGATAGTGAAAAGACTA
TAGCTGAATACTTCGTTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00001278-exon-sc0000007-1491911889:264677..266409 | TCONS_00001278-exon-sc0000007-1491911889:264677..266409 | Clytia hemisphaerica | exon |
| TCONS_00001278-exon-sc0000007-1510915933:264677..266409 | TCONS_00001278-exon-sc0000007-1510915933:264677..266409 | Clytia hemisphaerica | exon |
| TCONS_00001278-exon-sc0000007-1575043694:264677..266409 | TCONS_00001278-exon-sc0000007-1575043694:264677..266409 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000007 | supercontig | sc0000007:264677..266409 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR032675 | L_dom-like |
Blast
The following BLAST results are available for this feature:
|
