Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00001277 ID=TCONS_00001277|Name=TCONS_00001277|organism=Clytia hemisphaerica|type=transcript|length=2120bp
GTGATATGATGGTGTTTCTATAAGCATCTCTTGTGACAACCATCAATTAT
TACCCGATCGGATATCATAAATAAAGATTTAAGAAATATCTTTGATTAAT
GAGATATCATTAAAACCGTTGCTTCACTCCTATGAACAAAATATACCTCG
TTGGCGATCAAGCCGCAAACAAAATACATAAACATATTTTAAGCTCTTAA
TGTTGTTATAATTACAGCATCGCAATCTCTTTCATTAAGCATTAAGTCAA
TGAGATTTGTAGTGTCCATTTAAGGAGTGCACTTCACTTActatgttgaa
acaacgtttaaGCAGGTCATTTCCTGGATTAAAGACAGTGTTGTACTGCA
AACAAGCCAATTGCTAACTCACTATATATAGCATACTTCGTTCTACTTAT
TACAGGTTTTTTAATAAACATCACGacccttgtttgtttgttttgacaaG
ACATCTATGCAATACATTCTATTTCCTTCGCTAAATATTAGTTCAGTGTC
ACAATCTATTTCCCACCCGGATGAGTTTCCATTGTGGTATTTTACGGACC
GGAATGTTCCGAAGACCATTTCTTTCTTCCTTTCTTTGATTTGTCTTGAA
ATTGATGAAGAGTCTTTTGTAATGATCCGATACAACATTCACAGTTGCCA
CGAAGTATGGCTTTCAGTTTATTGATCACCAGCATGGTTTGGTTGTAGTC
GATTCCATGAAGCTCGAGCAGGTTGATCTCAGGGTTAAAGTGATTCGGAA
CAAAGTGACTTTCTAATTTCTGTCGTAAATTCTGAAAGAAGTTGTCCATC
ATTGCATCCTGGTCTGACTCACCGAAACGCTGCCCGCCACTAAAGTTCAT
ATCAAGCCATCGGTTCATATGGTGAATGGTCTCCAAGTAAACGTGAAGCA
CAATGTCACGTGATAGAagtttcatgacgtcatcagtagTGATCATCAGC
AAAGCGCCATAAAATGATTCCATGGTCATTTTGGTGGGGAAGGTTGTCAT
GGTGACAAGTTCTTGCTCATGGTATGACGAAGACCATTGCAAGGAGGGAT
GGATTCGGGTCGATGTGTGTTTAGGTTGTGCGATCAAATGTGTGATGTTG
TCACCGAAATACTGTTTCGCGTATGGTTTGCAATGCTCTTGGAGTTTGAT
GGTCGGTCTTAACTTGATAATGAGCTCCTTTTTCTTACTCTTTAGTTCAT
TTTCAAAGAACAAATGCAAATTGCACACTTCTTCCAATCCGATAGAATGA
AGGTTCATTTCTTCCATCCGTTCTTTCCATTCACAACTTTTCGAATATTC
TTTCAAAACCTTCGACATGGTCATATGTAAAAGAACGTTGACCGCTTTGG
CGTTGAGATAGTTGACGCCCTCGAGTTTTGAGATCTCGTCCCGCCACAAT
TCTTCGCTCTCTGCTTCCAACCCAATGGAGGTCACTGATACTCCACCGCG
GTGTATATACATCGAAGGGTTTTCTTCACCTAACTTGATCTCCCAAAATA
CAGTAAAAGTCGTCAAGCCTGTACATTTAGTGTAGATTTTGCCGAATCGT
TCATCTTTATTTCGTAAAATACGAGCTATATCGCTTAATATGGTTCTGAC
TAGTTTCGTATTCTTCAACTCCATACGACTGTAGAAGCAAACCCCTTGTC
TCGATTGCCTGAAGATCTGTCGCAAGCAATCTTGTCGTTTGAAATGAACA
TTGCTGGAACTATTCGTCATCTTCGTGGTAAGctcatcaaaaatcaaaac
acaaaGACACACTTTCCTTTGAACAGCTCGCTTTAAAATTGCAAGAAATC
ACTGATGTACTATCATTTTGTATCGCAGATTTTCGATTCATTGAATTTTG
GATAGGTTTACATAATTGATGGTTTAGGTGTATACTGTAAATGGATTTTT
GATTTGCGTTTGATTTTGCGCCTCCTTTCAATAGAGCATTCAATCGAAtc
gtctttttcttttcttcttccatCGGATAAAGATGAAGAAATTTGTTTGC
ACAATGATGACGCATTGTCAagcttttcttcttttcctttccGTTTCCAA
GGAAACAGTTATTTTCCCATCGTCCGCTCTTTCTTCTATATTATGGTTAC
TGTGATGACCTAGCTCTGAT Run BLAST on NCBI protein sequence of TCONS_00001277-protein >TCONS_00001277-protein ID=TCONS_00001277-protein|Name=TCONS_00001277-protein|organism=Clytia hemisphaerica|type=polypeptide|length=392bp
MTNSSSNVHFKRQDCLRQIFRQSRQGVCFYSRMELKNTKLVRTILSDIAR
ILRNKDERFGKIYTKCTGLTTFTVFWEIKLGEENPSMYIHRGGVSVTSIG
LEAESEELWRDEISKLEGVNYLNAKAVNVLLHMTMSKVLKEYSKSCEWKE
RMEEMNLHSIGLEEVCNLHLFFENELKSKKKELIIKLRPTIKLQEHCKPY
AKQYFGDNITHLIAQPKHTSTRIHPSLQWSSSYHEQELVTMTTFPTKMTM
ESFYGALLMITTDDVMKLLSRDIVLHVYLETIHHMNRWLDMNFSGGQRFG
ESDQDAMMDNFFQNLRQKLESHFVPNHFNPEINLLELHGIDYNQTMLVIN
KLKAILRGNCECCIGSLQKTLHQFQDKSKKGRKKWSSEHSGP Run BLAST on NCBI transcript from alignment at sc0000007:262102..264221 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00001277 ID=TCONS_00001277|Name=TCONS_00001277|organism=Clytia hemisphaerica|type=transcript|length=2120bp|location=Sequence derived from alignment at sc0000007:262102..264221 (Clytia hemisphaerica)
ATCAGAGCTAGGTCATCACAGTAACCATAATATAGAAGAAAGAGCGGACG
ATGGGAAAATAACTGTTTCCTTGGAAACggaaaggaaaagaagaaaagct
TGACAATGCGTCATCATTGTGCAAACAAATTTCTTCATCTTTATCCGatg
gaagaagaaaagaaaaagacgaTTCGATTGAATGCTCTATTGAAAGGAGG
CGCAAAATCAAACGCAAATCAAAAATCCATTTACAGTATACACCTAAACC
ATCAATTATGTAAACCTATCCAAAATTCAATGAATCGAAAATCTGCGATA
CAAAATGATAGTACATCAGTGATTTCTTGCAATTTTAAAGCGAGCTGTTC
AAAGGAAAGTGTGTCtttgtgttttgatttttgatgagCTTACCACGAAG
ATGACGAATAGTTCCAGCAATGTTCATTTCAAACGACAAGATTGCTTGCG
ACAGATCTTCAGGCAATCGAGACAAGGGGTTTGCTTCTACAGTCGTATGG
AGTTGAAGAATACGAAACTAGTCAGAACCATATTAAGCGATATAGCTCGT
ATTTTACGAAATAAAGATGAACGATTCGGCAAAATCTACACTAAATGTAC
AGGCTTGACGACTTTTACTGTATTTTGGGAGATCAAGTTAGGTGAAGAAA
ACCCTTCGATGTATATACACCGCGGTGGAGTATCAGTGACCTCCATTGGG
TTGGAAGCAGAGAGCGAAGAATTGTGGCGGGACGAGATCTCAAAACTCGA
GGGCGTCAACTATCTCAACGCCAAAGCGGTCAACGTTCTTTTACATATGA
CCATGTCGAAGGTTTTGAAAGAATATTCGAAAAGTTGTGAATGGAAAGAA
CGGATGGAAGAAATGAACCTTCATTCTATCGGATTGGAAGAAGTGTGCAA
TTTGCATTTGTTCTTTGAAAATGAACTAAAGAGTAAGAAAAAGGAGCTCA
TTATCAAGTTAAGACCGACCATCAAACTCCAAGAGCATTGCAAACCATAC
GCGAAACAGTATTTCGGTGACAACATCACACATTTGATCGCACAACCTAA
ACACACATCGACCCGAATCCATCCCTCCTTGCAATGGTCTTCGTCATACC
ATGAGCAAGAACTTGTCACCATGACAACCTTCCCCACCAAAATGACCATG
GAATCATTTTATGGCGCTTTGCTGATGATCActactgatgacgtcatgaa
actTCTATCACGTGACATTGTGCTTCACGTTTACTTGGAGACCATTCACC
ATATGAACCGATGGCTTGATATGAACTTTAGTGGCGGGCAGCGTTTCGGT
GAGTCAGACCAGGATGCAATGATGGACAACTTCTTTCAGAATTTACGACA
GAAATTAGAAAGTCACTTTGTTCCGAATCACTTTAACCCTGAGATCAACC
TGCTCGAGCTTCATGGAATCGACTACAACCAAACCATGCTGGTGATCAAT
AAACTGAAAGCCATACTTCGTGGCAACTGTGAATGTTGTATCGGATCATT
ACAAAAGACTCTTCATCAATTTCAAGACAAATCAAAGAAAGGAAGAAAGA
AATGGTCTTCGGAACATTCCGGTCCGTAAAATACCACAATGGAAACTCAT
CCGGGTGGGAAATAGATTGTGACACTGAACTAATATTTAGCGAAGGAAAT
AGAATGTATTGCATAGATGTCttgtcaaaacaaacaaacaagggtCGTGA
TGTTTATTAAAAAACCTGTAATAAGTAGAACGAAGTATGCTATATATAGT
GAGTTAGCAATTGGCTTGTTTGCAGTACAACACTGTCTTTAATCCAGGAA
ATGACCTGCttaaacgttgtttcaacatagTAAGTGAAGTGCACTCCTTA
AATGGACACTACAAATCTCATTGACTTAATGCTTAATGAAAGAGATTGCG
ATGCTGTAATTATAACAACATTAAGAGCTTAAAATATGTTTATGTATTTT
GTTTGCGGCTTGATCGCCAACGAGGTATATTTTGTTCATAGGAGTGAAGC
AACGGTTTTAATGATATCTCATTAATCAAAGATATTTCTTAAATCTTTAT
TTATGATATCCGATCGGGTAATAATTGATGGTTGTCACAAGAGATGCTTA
TAGAAACACCATCATATCAC Coding sequence (CDS) from alignment at sc0000007:262102..264221 >TCONS_00001277 ID=TCONS_00001277|Name=TCONS_00001277|organism=Clytia hemisphaerica|type=CDS|length=1179bp|location=Sequence derived from alignment at sc0000007:262102..264221 (Clytia hemisphaerica)
ATGACGAATAGTTCCAGCAATGTTCATTTCAAACGACAAGATTGCTTGCG
ACAGATCTTCAGGCAATCGAGACAAGGGGTTTGCTTCTACAGTCGTATGG
AGTTGAAGAATACGAAACTAGTCAGAACCATATTAAGCGATATAGCTCGT
ATTTTACGAAATAAAGATGAACGATTCGGCAAAATCTACACTAAATGTAC
AGGCTTGACGACTTTTACTGTATTTTGGGAGATCAAGTTAGGTGAAGAAA
ACCCTTCGATGTATATACACCGCGGTGGAGTATCAGTGACCTCCATTGGG
TTGGAAGCAGAGAGCGAAGAATTGTGGCGGGACGAGATCTCAAAACTCGA
GGGCGTCAACTATCTCAACGCCAAAGCGGTCAACGTTCTTTTACATATGA
CCATGTCGAAGGTTTTGAAAGAATATTCGAAAAGTTGTGAATGGAAAGAA
CGGATGGAAGAAATGAACCTTCATTCTATCGGATTGGAAGAAGTGTGCAA
TTTGCATTTGTTCTTTGAAAATGAACTAAAGAGTAAGAAAAAGGAGCTCA
TTATCAAGTTAAGACCGACCATCAAACTCCAAGAGCATTGCAAACCATAC
GCGAAACAGTATTTCGGTGACAACATCACACATTTGATCGCACAACCTAA
ACACACATCGACCCGAATCCATCCCTCCTTGCAATGGTCTTCGTCATACC
ATGAGCAAGAACTTGTCACCATGACAACCTTCCCCACCAAAATGACCATG
GAATCATTTTATGGCGCTTTGCTGATGATCActactgatgacgtcatgaa
actTCTATCACGTGACATTGTGCTTCACGTTTACTTGGAGACCATTCACC
ATATGAACCGATGGCTTGATATGAACTTTAGTGGCGGGCAGCGTTTCGGT
GAGTCAGACCAGGATGCAATGATGGACAACTTCTTTCAGAATTTACGACA
GAAATTAGAAAGTCACTTTGTTCCGAATCACTTTAACCCTGAGATCAACC
TGCTCGAGCTTCATGGAATCGACTACAACCAAACCATGCTGGTGATCAAT
AAACTGAAAGCCATACTTCGTGGCAACTGTGAATGTTGTATCGGATCATT
ACAAAAGACTCTTCATCAATTTCAAGACAAATCAAAGAAAGGAAGAAAGA
AATGGTCTTCGGAACATTCCGGTCCGTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00001277-exon-sc0000007-1491911889:262102..264221 | TCONS_00001277-exon-sc0000007-1491911889:262102..264221 | Clytia hemisphaerica | exon |
| TCONS_00001277-exon-sc0000007-1510915933:262102..264221 | TCONS_00001277-exon-sc0000007-1510915933:262102..264221 | Clytia hemisphaerica | exon |
| TCONS_00001277-exon-sc0000007-1575043694:262102..264221 | TCONS_00001277-exon-sc0000007-1575043694:262102..264221 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000007 | supercontig | sc0000007:262102..264221 . |
Blast
The following BLAST results are available for this feature:
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