TCONS_00001277 (transcript) - C. hemisphaerica

Overview
NameTCONS_00001277
Unique NameTCONS_00001277
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2120

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00001277 ID=TCONS_00001277|Name=TCONS_00001277|organism=Clytia hemisphaerica|type=transcript|length=2120bp
GTGATATGATGGTGTTTCTATAAGCATCTCTTGTGACAACCATCAATTAT
TACCCGATCGGATATCATAAATAAAGATTTAAGAAATATCTTTGATTAAT
GAGATATCATTAAAACCGTTGCTTCACTCCTATGAACAAAATATACCTCG
TTGGCGATCAAGCCGCAAACAAAATACATAAACATATTTTAAGCTCTTAA
TGTTGTTATAATTACAGCATCGCAATCTCTTTCATTAAGCATTAAGTCAA
TGAGATTTGTAGTGTCCATTTAAGGAGTGCACTTCACTTActatgttgaa
acaacgtttaaGCAGGTCATTTCCTGGATTAAAGACAGTGTTGTACTGCA
AACAAGCCAATTGCTAACTCACTATATATAGCATACTTCGTTCTACTTAT
TACAGGTTTTTTAATAAACATCACGacccttgtttgtttgttttgacaaG
ACATCTATGCAATACATTCTATTTCCTTCGCTAAATATTAGTTCAGTGTC
ACAATCTATTTCCCACCCGGATGAGTTTCCATTGTGGTATTTTACGGACC
GGAATGTTCCGAAGACCATTTCTTTCTTCCTTTCTTTGATTTGTCTTGAA
ATTGATGAAGAGTCTTTTGTAATGATCCGATACAACATTCACAGTTGCCA
CGAAGTATGGCTTTCAGTTTATTGATCACCAGCATGGTTTGGTTGTAGTC
GATTCCATGAAGCTCGAGCAGGTTGATCTCAGGGTTAAAGTGATTCGGAA
CAAAGTGACTTTCTAATTTCTGTCGTAAATTCTGAAAGAAGTTGTCCATC
ATTGCATCCTGGTCTGACTCACCGAAACGCTGCCCGCCACTAAAGTTCAT
ATCAAGCCATCGGTTCATATGGTGAATGGTCTCCAAGTAAACGTGAAGCA
CAATGTCACGTGATAGAagtttcatgacgtcatcagtagTGATCATCAGC
AAAGCGCCATAAAATGATTCCATGGTCATTTTGGTGGGGAAGGTTGTCAT
GGTGACAAGTTCTTGCTCATGGTATGACGAAGACCATTGCAAGGAGGGAT
GGATTCGGGTCGATGTGTGTTTAGGTTGTGCGATCAAATGTGTGATGTTG
TCACCGAAATACTGTTTCGCGTATGGTTTGCAATGCTCTTGGAGTTTGAT
GGTCGGTCTTAACTTGATAATGAGCTCCTTTTTCTTACTCTTTAGTTCAT
TTTCAAAGAACAAATGCAAATTGCACACTTCTTCCAATCCGATAGAATGA
AGGTTCATTTCTTCCATCCGTTCTTTCCATTCACAACTTTTCGAATATTC
TTTCAAAACCTTCGACATGGTCATATGTAAAAGAACGTTGACCGCTTTGG
CGTTGAGATAGTTGACGCCCTCGAGTTTTGAGATCTCGTCCCGCCACAAT
TCTTCGCTCTCTGCTTCCAACCCAATGGAGGTCACTGATACTCCACCGCG
GTGTATATACATCGAAGGGTTTTCTTCACCTAACTTGATCTCCCAAAATA
CAGTAAAAGTCGTCAAGCCTGTACATTTAGTGTAGATTTTGCCGAATCGT
TCATCTTTATTTCGTAAAATACGAGCTATATCGCTTAATATGGTTCTGAC
TAGTTTCGTATTCTTCAACTCCATACGACTGTAGAAGCAAACCCCTTGTC
TCGATTGCCTGAAGATCTGTCGCAAGCAATCTTGTCGTTTGAAATGAACA
TTGCTGGAACTATTCGTCATCTTCGTGGTAAGctcatcaaaaatcaaaac
acaaaGACACACTTTCCTTTGAACAGCTCGCTTTAAAATTGCAAGAAATC
ACTGATGTACTATCATTTTGTATCGCAGATTTTCGATTCATTGAATTTTG
GATAGGTTTACATAATTGATGGTTTAGGTGTATACTGTAAATGGATTTTT
GATTTGCGTTTGATTTTGCGCCTCCTTTCAATAGAGCATTCAATCGAAtc
gtctttttcttttcttcttccatCGGATAAAGATGAAGAAATTTGTTTGC
ACAATGATGACGCATTGTCAagcttttcttcttttcctttccGTTTCCAA
GGAAACAGTTATTTTCCCATCGTCCGCTCTTTCTTCTATATTATGGTTAC
TGTGATGACCTAGCTCTGAT
Run BLAST on NCBI

protein sequence of TCONS_00001277-protein

>TCONS_00001277-protein ID=TCONS_00001277-protein|Name=TCONS_00001277-protein|organism=Clytia hemisphaerica|type=polypeptide|length=392bp
MTNSSSNVHFKRQDCLRQIFRQSRQGVCFYSRMELKNTKLVRTILSDIAR
ILRNKDERFGKIYTKCTGLTTFTVFWEIKLGEENPSMYIHRGGVSVTSIG
LEAESEELWRDEISKLEGVNYLNAKAVNVLLHMTMSKVLKEYSKSCEWKE
RMEEMNLHSIGLEEVCNLHLFFENELKSKKKELIIKLRPTIKLQEHCKPY
AKQYFGDNITHLIAQPKHTSTRIHPSLQWSSSYHEQELVTMTTFPTKMTM
ESFYGALLMITTDDVMKLLSRDIVLHVYLETIHHMNRWLDMNFSGGQRFG
ESDQDAMMDNFFQNLRQKLESHFVPNHFNPEINLLELHGIDYNQTMLVIN
KLKAILRGNCECCIGSLQKTLHQFQDKSKKGRKKWSSEHSGP
Run BLAST on NCBI

transcript from alignment at sc0000007:262102..264221

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00001277 ID=TCONS_00001277|Name=TCONS_00001277|organism=Clytia hemisphaerica|type=transcript|length=2120bp|location=Sequence derived from alignment at sc0000007:262102..264221 (Clytia hemisphaerica)
ATCAGAGCTAGGTCATCACAGTAACCATAATATAGAAGAAAGAGCGGACG ATGGGAAAATAACTGTTTCCTTGGAAACggaaaggaaaagaagaaaagct TGACAATGCGTCATCATTGTGCAAACAAATTTCTTCATCTTTATCCGatg gaagaagaaaagaaaaagacgaTTCGATTGAATGCTCTATTGAAAGGAGG CGCAAAATCAAACGCAAATCAAAAATCCATTTACAGTATACACCTAAACC ATCAATTATGTAAACCTATCCAAAATTCAATGAATCGAAAATCTGCGATA CAAAATGATAGTACATCAGTGATTTCTTGCAATTTTAAAGCGAGCTGTTC AAAGGAAAGTGTGTCtttgtgttttgatttttgatgagCTTACCACGAAG ATGACGAATAGTTCCAGCAATGTTCATTTCAAACGACAAGATTGCTTGCG ACAGATCTTCAGGCAATCGAGACAAGGGGTTTGCTTCTACAGTCGTATGG AGTTGAAGAATACGAAACTAGTCAGAACCATATTAAGCGATATAGCTCGT ATTTTACGAAATAAAGATGAACGATTCGGCAAAATCTACACTAAATGTAC AGGCTTGACGACTTTTACTGTATTTTGGGAGATCAAGTTAGGTGAAGAAA ACCCTTCGATGTATATACACCGCGGTGGAGTATCAGTGACCTCCATTGGG TTGGAAGCAGAGAGCGAAGAATTGTGGCGGGACGAGATCTCAAAACTCGA GGGCGTCAACTATCTCAACGCCAAAGCGGTCAACGTTCTTTTACATATGA CCATGTCGAAGGTTTTGAAAGAATATTCGAAAAGTTGTGAATGGAAAGAA CGGATGGAAGAAATGAACCTTCATTCTATCGGATTGGAAGAAGTGTGCAA TTTGCATTTGTTCTTTGAAAATGAACTAAAGAGTAAGAAAAAGGAGCTCA TTATCAAGTTAAGACCGACCATCAAACTCCAAGAGCATTGCAAACCATAC GCGAAACAGTATTTCGGTGACAACATCACACATTTGATCGCACAACCTAA ACACACATCGACCCGAATCCATCCCTCCTTGCAATGGTCTTCGTCATACC ATGAGCAAGAACTTGTCACCATGACAACCTTCCCCACCAAAATGACCATG GAATCATTTTATGGCGCTTTGCTGATGATCActactgatgacgtcatgaa actTCTATCACGTGACATTGTGCTTCACGTTTACTTGGAGACCATTCACC ATATGAACCGATGGCTTGATATGAACTTTAGTGGCGGGCAGCGTTTCGGT GAGTCAGACCAGGATGCAATGATGGACAACTTCTTTCAGAATTTACGACA GAAATTAGAAAGTCACTTTGTTCCGAATCACTTTAACCCTGAGATCAACC TGCTCGAGCTTCATGGAATCGACTACAACCAAACCATGCTGGTGATCAAT AAACTGAAAGCCATACTTCGTGGCAACTGTGAATGTTGTATCGGATCATT ACAAAAGACTCTTCATCAATTTCAAGACAAATCAAAGAAAGGAAGAAAGA AATGGTCTTCGGAACATTCCGGTCCGTAAAATACCACAATGGAAACTCAT CCGGGTGGGAAATAGATTGTGACACTGAACTAATATTTAGCGAAGGAAAT AGAATGTATTGCATAGATGTCttgtcaaaacaaacaaacaagggtCGTGA TGTTTATTAAAAAACCTGTAATAAGTAGAACGAAGTATGCTATATATAGT GAGTTAGCAATTGGCTTGTTTGCAGTACAACACTGTCTTTAATCCAGGAA ATGACCTGCttaaacgttgtttcaacatagTAAGTGAAGTGCACTCCTTA AATGGACACTACAAATCTCATTGACTTAATGCTTAATGAAAGAGATTGCG ATGCTGTAATTATAACAACATTAAGAGCTTAAAATATGTTTATGTATTTT GTTTGCGGCTTGATCGCCAACGAGGTATATTTTGTTCATAGGAGTGAAGC AACGGTTTTAATGATATCTCATTAATCAAAGATATTTCTTAAATCTTTAT TTATGATATCCGATCGGGTAATAATTGATGGTTGTCACAAGAGATGCTTA TAGAAACACCATCATATCAC

Coding sequence (CDS) from alignment at sc0000007:262102..264221

>TCONS_00001277 ID=TCONS_00001277|Name=TCONS_00001277|organism=Clytia hemisphaerica|type=CDS|length=1179bp|location=Sequence derived from alignment at sc0000007:262102..264221 (Clytia hemisphaerica)
ATGACGAATAGTTCCAGCAATGTTCATTTCAAACGACAAGATTGCTTGCG
ACAGATCTTCAGGCAATCGAGACAAGGGGTTTGCTTCTACAGTCGTATGG
AGTTGAAGAATACGAAACTAGTCAGAACCATATTAAGCGATATAGCTCGT
ATTTTACGAAATAAAGATGAACGATTCGGCAAAATCTACACTAAATGTAC
AGGCTTGACGACTTTTACTGTATTTTGGGAGATCAAGTTAGGTGAAGAAA
ACCCTTCGATGTATATACACCGCGGTGGAGTATCAGTGACCTCCATTGGG
TTGGAAGCAGAGAGCGAAGAATTGTGGCGGGACGAGATCTCAAAACTCGA
GGGCGTCAACTATCTCAACGCCAAAGCGGTCAACGTTCTTTTACATATGA
CCATGTCGAAGGTTTTGAAAGAATATTCGAAAAGTTGTGAATGGAAAGAA
CGGATGGAAGAAATGAACCTTCATTCTATCGGATTGGAAGAAGTGTGCAA
TTTGCATTTGTTCTTTGAAAATGAACTAAAGAGTAAGAAAAAGGAGCTCA
TTATCAAGTTAAGACCGACCATCAAACTCCAAGAGCATTGCAAACCATAC
GCGAAACAGTATTTCGGTGACAACATCACACATTTGATCGCACAACCTAA
ACACACATCGACCCGAATCCATCCCTCCTTGCAATGGTCTTCGTCATACC
ATGAGCAAGAACTTGTCACCATGACAACCTTCCCCACCAAAATGACCATG
GAATCATTTTATGGCGCTTTGCTGATGATCActactgatgacgtcatgaa
actTCTATCACGTGACATTGTGCTTCACGTTTACTTGGAGACCATTCACC
ATATGAACCGATGGCTTGATATGAACTTTAGTGGCGGGCAGCGTTTCGGT
GAGTCAGACCAGGATGCAATGATGGACAACTTCTTTCAGAATTTACGACA
GAAATTAGAAAGTCACTTTGTTCCGAATCACTTTAACCCTGAGATCAACC
TGCTCGAGCTTCATGGAATCGACTACAACCAAACCATGCTGGTGATCAAT
AAACTGAAAGCCATACTTCGTGGCAACTGTGAATGTTGTATCGGATCATT
ACAAAAGACTCTTCATCAATTTCAAGACAAATCAAAGAAAGGAAGAAAGA
AATGGTCTTCGGAACATTCCGGTCCGTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000681XLOC_000681Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001277-proteinTCONS_00001277-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001277-exon-sc0000007-1491911889:262102..264221TCONS_00001277-exon-sc0000007-1491911889:262102..264221Clytia hemisphaericaexon
TCONS_00001277-exon-sc0000007-1510915933:262102..264221TCONS_00001277-exon-sc0000007-1510915933:262102..264221Clytia hemisphaericaexon
TCONS_00001277-exon-sc0000007-1575043694:262102..264221TCONS_00001277-exon-sc0000007-1575043694:262102..264221Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000007supercontigsc0000007:262102..264221 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.018565 0.0181038 0.0210203 0.0411301 0.751079 0.534161 0.262551 0.156416 0.328532 0.135647 0.677119 0.729488 3.46951 3.28256 1.69723 2.11553 0.627151 1.08563 0.513111 1.09452 0.771838 0.656643 0.74502 0.561217 0.81723 1.06735 0.509126 0.190174 0.247269 0.146958
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00001277 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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