TCONS_00001275 (transcript) - C. hemisphaerica

Overview
NameTCONS_00001275
Unique NameTCONS_00001275
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length567

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00001275 ID=TCONS_00001275|Name=TCONS_00001275|organism=Clytia hemisphaerica|type=transcript|length=567bp
GGAGAAGTACCTAAAATTTGCGAAGATTtaactttttaagatttaagatt
tttttataagcagttGAACCGATGAGTTATGACGTAACACTAGAATTGCA
TCTCTCAGATCAAGATGCTAATCTTTGTAGATTTTAGGGAGTAACATTTT
TGCAATAGTTTACAAACGGTTGTAGGTTCAACTCCCAGCTGGGTAaaacc
aaagattcccaaaatggtacttgctgatgcctctctgcttgatgctcagc
aattaggagaaggatcaagggtaagtggagcaatccagggagaaagtgTT
GCGCCCTCCCTTACTTTCGGGTAAACTatagctatcaaaagaggagcctt
cgtgtcgcctccgactgcggtcgaaGACTTATTTACAACTTTCAAGCACA
AAAGATTTATCACCAGAGTCCTTACCAAGAAAAGAATCATGCCGAATCGT
AGAAATCGTAGAAATCTGAGTTACTCTGCAGGTTTAAAGAGCTATTTACT
ACACTGTAGCAGGGTGATTTTGGTAATACCTAAAGTAAATTTTGATAACT
AGTTTTTATattaaaat
Run BLAST on NCBI

transcript from alignment at sc0000007:126533..127099

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00001275 ID=TCONS_00001275|Name=TCONS_00001275|organism=Clytia hemisphaerica|type=transcript|length=567bp|location=Sequence derived from alignment at sc0000007:126533..127099 (Clytia hemisphaerica)
attttaatATAAAAACTAGTTATCAAAATTTACTTTAGGTATTACCAAAA
TCACCCTGCTACAGTGTAGTAAATAGCTCTTTAAACCTGCAGAGTAACTC
AGATTTCTACGATTTCTACGATTCGGCATGATTCTTTTCTTGGTAAGGAC
TCTGGTGATAAATCTTTTGTGCTTGAAAGTTGTAAATAAGTCttcgaccg
cagtcggaggcgacacgaaggctcctcttttgatagctatAGTTTACCCG
AAAGTAAGGGAGGGCGCAAcactttctccctggattgctccacttaccct
tgatccttctcctaattgctgagcatcaagcagagaggcatcagcaagta
ccattttgggaatctttggtttTACCCAGCTGGGAGTTGAACCTACAACC
GTTTGTAAACTATTGCAAAAATGTTACTCCCTAAAATCTACAAAGATTAG
CATCTTGATCTGAGAGATGCAATTCTAGTGTTACGTCATAACTCATCGGT
TCaactgcttataaaaaaatcttaaatcttaaaaagttaAATCTTCGCAA
ATTTTAGGTACTTCTCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000679XLOC_000679Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001275-exon-sc0000007-1491911889:126533..127099TCONS_00001275-exon-sc0000007-1491911889:126533..127099Clytia hemisphaericaexon
TCONS_00001275-exon-sc0000007-1510915933:126533..127099TCONS_00001275-exon-sc0000007-1510915933:126533..127099Clytia hemisphaericaexon
TCONS_00001275-exon-sc0000007-1575043694:126533..127099TCONS_00001275-exon-sc0000007-1575043694:126533..127099Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000007supercontigsc0000007:126533..127099 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.300638	0.0994275	0.928548	1.27545	0.267283	0	0.127408	0	0.0838838	0.328248	0.101149	0.284392	0	0.0694235	0.140494	0.0613506	0.0761578	0.128241	0.316036	0	0.192181	0.151046	0	0.103919	0	0.0949587	0.234628	0.290041	0	0.11288
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00001275 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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