TCONS_00001271 (transcript) - C. hemisphaerica

Overview
NameTCONS_00001271
Unique NameTCONS_00001271
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length702

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00001271 ID=TCONS_00001271|Name=TCONS_00001271|organism=Clytia hemisphaerica|type=transcript|length=702bp
AGGCGATGTTGCTATTTGCCAAGTGATCTTCTCTGCTGTTGGTATTACAA
GTCACATGGCCCCACTAGAAGCGGTAGATAATATTGAGCATCTCCTCATC
AGTACATCAGAAAGTGGGGTATCCAATCATGATACTTACATTGAAGCATG
CAAAGAGTTTGATCGGTATCTGGTTGAACAAGGAATTGAGAAGCCAGTTG
TTCTACTATCTGATGGGCACAGTTCCAGATATGAttacgatgttcttaag
ttTCTTTTATCTCGAGACATTTGGCTATTTATATCTCCACCAGACACGAC
AGGAGTTACTCAATTGCTCGACCAGCTTAATAAGAACCTCCATTTAGAAT
ACAAAAACGCAAAGGATGAGCTCTTCAATGACATGCATTCACTAAACAAA
GAATCTTTCATGCTTATTCTATCGAGGATCTGGCATATGGGCAACTAGTG
AAACACTTAANATACAAAATATATACATTTAGAATACAAAAACGCTTCTA
TCGAGGATCTGGCATAAATGGGCAACTAGTGAAACACTTGTTAAGTGTTC
AAAACGCGCTGGCATCACTAAAACCTCATTAAATGTCAATTTTATGCAGG
AGGACAAGTTTGAAAGAGCACAAAACTTATTAGAGGAGGCTGGTTCATCA
AACTCAAATCCAACCCTTGCTGAATCATCCCCAGTCTCAATTGTATCACC
CA
Run BLAST on NCBI

protein sequence of TCONS_00001271-protein

>TCONS_00001271-protein ID=TCONS_00001271-protein|Name=TCONS_00001271-protein|organism=Clytia hemisphaerica|type=polypeptide|length=148bp
GDVAICQVIFSAVGITSHMAPLEAVDNIEHLLISTSESGVSNHDTYIEAC
KEFDRYLVEQGIEKPVVLLSDGHSSRYDYDVLKFLLSRDIWLFISPPDTT
GVTQLLDQLNKNLHLEYKNAKDELFNDMHSLNKESFMLILSRIWHMGN
Run BLAST on NCBI

transcript from alignment at sc0000007:9326..10027

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00001271 ID=TCONS_00001271|Name=TCONS_00001271|organism=Clytia hemisphaerica|type=transcript|length=702bp|location=Sequence derived from alignment at sc0000007:9326..10027 (Clytia hemisphaerica)
TGGGTGATACAATTGAGACTGGGGATGATTCAGCAAGGGTTGGATTTGAG
TTTGATGAACCAGCCTCCTCTAATAAGTTTTGTGCTCTTTCAAACTTGTC
CTCCTGCATAAAATTGACATTTAATGAGGTTTTAGTGATGCCAGCGCGTT
TTGAACACTTAACAAGTGTTTCACTAGTTGCCCATTTATGCCAGATCCTC
GATAGAAGCGTTTTTGTATTCTAAATGTATATATTTTGTATNTTAAGTGT
TTCACTAGTTGCCCATATGCCAGATCCTCGATAGAATAAGCATGAAAGAT
TCTTTGTTTAGTGAATGCATGTCATTGAAGAGCTCATCCTTTGCGTTTTT
GTATTCTAAATGGAGGTTCTTATTAAGCTGGTCGAGCAATTGAGTAACTC
CTGTCGTGTCTGGTGGAGATATAAATAGCCAAATGTCTCGAGATAAAAGA
aacttaagaacatcgtaaTCATATCTGGAACTGTGCCCATCAGATAGTAG
AACAACTGGCTTCTCAATTCCTTGTTCAACCAGATACCGATCAAACTCTT
TGCATGCTTCAATGTAAGTATCATGATTGGATACCCCACTTTCTGATGTA
CTGATGAGGAGATGCTCAATATTATCTACCGCTTCTAGTGGGGCCATGTG
ACTTGTAATACCAACAGCAGAGAAGATCACTTGGCAAATAGCAACATCGC
CT

Coding sequence (CDS) from alignment at sc0000007:9326..10027

>TCONS_00001271 ID=TCONS_00001271|Name=TCONS_00001271|organism=Clytia hemisphaerica|type=CDS|length=447bp|location=Sequence derived from alignment at sc0000007:9326..10027 (Clytia hemisphaerica)
CTAGTTGCCCATATGCCAGATCCTCGATAGAATAAGCATGAAAGATTCTT
TGTTTAGTGAATGCATGTCATTGAAGAGCTCATCCTTTGCGTTTTTGTAT
TCTAAATGGAGGTTCTTATTAAGCTGGTCGAGCAATTGAGTAACTCCTGT
CGTGTCTGGTGGAGATATAAATAGCCAAATGTCTCGAGATAAAAGAaact
taagaacatcgtaaTCATATCTGGAACTGTGCCCATCAGATAGTAGAACA
ACTGGCTTCTCAATTCCTTGTTCAACCAGATACCGATCAAACTCTTTGCA
TGCTTCAATGTAAGTATCATGATTGGATACCCCACTTTCTGATGTACTGA
TGAGGAGATGCTCAATATTATCTACCGCTTCTAGTGGGGCCATGTGACTT
GTAATACCAACAGCAGAGAAGATCACTTGGCAAATAGCAACATCGCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000675XLOC_000675Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001271-proteinTCONS_00001271-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001271-exon-sc0000007-1491911889:9326..10027TCONS_00001271-exon-sc0000007-1491911889:9326..10027Clytia hemisphaericaexon
TCONS_00001271-exon-sc0000007-1510915933:9326..10027TCONS_00001271-exon-sc0000007-1510915933:9326..10027Clytia hemisphaericaexon
TCONS_00001271-exon-sc0000007-1575043694:9326..10027TCONS_00001271-exon-sc0000007-1575043694:9326..10027Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000007supercontigsc0000007:9326..10027 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.572049	0.558108	1.79071	0.544707	0.106063	0.250699	0.6082	0.973473	0.552868	0.803261	1.04901	1.16842	0.108349	0.254324	0.411131	0.340552	0.654728	0	0.68754	0.278993	0.426685	0.515996	0.668842	0.405478	0.782726	0.339533	0.611335	0.801026	0.972547	0.274163
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00001271 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top