TCONS_00001262 (transcript) - C. hemisphaerica

Overview
NameTCONS_00001262
Unique NameTCONS_00001262
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2769

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00001262 ID=TCONS_00001262|Name=TCONS_00001262|organism=Clytia hemisphaerica|type=transcript|length=2769bp
TTNGAacatatttttaactgaagttaagagagatttttcatgatttttat
ttgagagATTGGACTTATatactttctttctcatttttatacttaatatt
accaaaaatcagtaaaaaaataaaaatgtcaaatttgttgagttcccctt
taatCTCATGGGTGTTTAAAGTTGCACTTTATAAAAAGTTGTGTGATCTT
TAATCTGTTATCTGCTAATTAAGGATAAAGGAAATATCTTTTCTCTACAC
CACTGTAAATGGACTCCCTAAACACATTCGAAGATTAGTTTTCTTGGATT
TTCAGAACTAAGGAACGGGATCTTGGTATAAGTCATTTAGAACGGCTTTG
TTTACGTTGATTCCAAGCAtctcataaaaaagattttcaaatagaTCTCG
TGGATGATAGCGAAATGTGCATGCATCCAATGCAAACAATGTACATCGTT
TTTCATATTGTAATGTAAGCAGATGTAAGTAcacaataatatttttattt
atctatCACCTTTTTATAAAGGAATGTATCCTAAACAAAAACAGCTTTTT
TTCTCGCTTCTCTTTTTTCACTCGCTgtctaccatctttaattttgttTG
AGTTCTGTTGAATGTGGAAATCGTGTCTCCCGTATGCGTATTCCCGGAGC
TTTCAGATGGCGTGTGCTGCTTACATGAAAAAATTCGCAATCTTGTcgaa
aaatcgcaatttcttctattttttgaaattccagaTGACctatagatttt
caaataaagcagcatgtgatagattgtagcctaatcttaccctgggttta
ctaaaaaaacttGATTGAAAAGACGAACCAGTAGGAAATCTACACTGAAC
TCTCATCCCCAAtagaaaaacactgaaatttTGGTCATAGATTTTGAGtc
ataaacaatagaatttcaaatgCCCACCTATTATTAGCAAAAATTTTCTG
TTCTTTTGACTTTAAACTTCATTTTATCCCACTTGCTAATAAATTCTCat
cgggtcactgagacagggtaGTTTGAAACAAAGAATGAATAAATTATAAG
GTTAAATTCCATTTTCAATGGTAAATAATGTCACATATTTTATTCCAAAA
TAACAAATGATGGGCCTATACTTTTATGATAGAAAGCTTTTATAAAAAGA
TTGGAGTCTCGCTTTAGTAACAAAATTGAGCTAATGCCATGGGTgatatt
ttatttcatatttaccTGCATCTATTGATTGTTGATCTGCGTGGGAGAAC
GGAATCTCTACTTATTCCTAAAGTTCGTCCAACGTGTCTGACAATGTCTT
CCAGGGATACAACCGTTGATGTACATTGTGTCGTTTCTTTGTCACAAGTG
GGCTGCAGGAGTGTTTTGTTCAATAAACAACTTGATGCATGGAACAAGAG
TTGGATGTTTAGAATGAAGGCTTGGTCTACCGGGCCTTCTCTTTTTTCCA
TAAACTGCGAGATCTTCATCTGTAATAAAGTCTTCATTCTCCTCAAAGTC
GAAAAAACAATCCAAATCGTCATCAAGTCGAATTCCATCAGATTCCATAT
TATATTTGTTTCAACGCACGTAAAATTTAACAACGAGTATAGAACTACAA
ATAATAACACATTCGAAAATTAAAACTTAAACAACTACACCCCCTTCTAA
CAAACCCAATGAGACCCCTTCCCAGTgaaaaaaactggccaaataTCATC
CCCAGCGggaaagaagggggcgtttattaaatctTACATCAACCATAAAT
CTTCACATTTTTACATATAACCATTATAGTaaagttgtaattttttaatt
aagtttcagtaaaattaaaagttattttattgTTATCTTTAAATTTAATG
TCAACAAAGAGCAACCTTGTGCCTCATGGATATCTTTACATGCACTGGAA
CTGACCTTATACCTGCAAGGTCTCTTGTAATAGTCTGTTTTAGTGAGTTT
TTCGAAGAAACTGTGGGGAAATTTCTTTATATGAAAACAGACAATATACA
GTCTAATTCaggggttttgctttgtttttggtaggctggcgaatgaaaaa
ttaactctggcGATTTCTAGATTTTAGGCcggcgaattcttagcaagcgC
AGTTGGAACGTCAGCGGCGAACTGAACTTTTCGAACGGCGAATTGTAATT
CTTTTATGCCTTATGCCTTTTACCTGGCGAAATTCGCCGTTCGCCGGGCC
TAAATAAGACCCCTGCTAATTGGTAGCTGCAAATATTTATTGAACAATCA
GCCAGCTTACTAGCTTTTCCTTGCTGAAAATGGGTATGATGTTTTTTGTT
GTACTCGGTATGTAAAAGAAAAGCTAGAAATAGTTCTCTACACGTAACAG
AACACAATTTTCAGAAGATTGCTTTTTTGATAAAGTGGAAATGTTATGGT
aagtctttctttctttttcagtttcttttctttttttattgaattgaaaa
agtggccaaattataaaaaatatttctttttcttcccTCGTTCATTAATT
CTCATCTGTGGCATGTTTACCACCAACCAAGGTCTAGTAGAGATCATTTT
GTCTGCCCATTTTCACCTAGCTTGAAATTCATGCcgattttctctatttt
ttcttCGTAATTTTATTCTTAGGGGTCATCAAAGAAGAATCTCAGCATCA
ATTTACCCAGTAAAACGAAGTCATCATGTGTCGCGCTCATTTGGTTGTCT
ACGTTTTGCTCCTTCTGGCTTCGCTCTACCGAAGCACACACTCAGCTGGT
ACTACACCTGGTCNTAAAA
Run BLAST on NCBI

transcript from alignment at sc0000007:1309249..1313700-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00001262 ID=TCONS_00001262|Name=TCONS_00001262|organism=Clytia hemisphaerica|type=transcript|length=4452bp|location=Sequence derived from alignment at sc0000007:1309249..1313700- (Clytia hemisphaerica)
TTNGAACATATTTTTAACTGAAGTTAAGAGAGATTTTTCATGATTTTTAT
TTGAGAGATTGGACTTATATACTTTCTTTCTCATTTTTATACTTAATATT
ACCAAAAATCAGTAAAAAAATAAAAATGTCAAATTTGTTGAGTTCCCCTT
TAATCTCATGGGTGTTTAAAGTTGCACTTTATAAAAAGTTGTGTGATCTT
TAATCTGTTATCTGCTAATTAAGGATAAAGGAAATATCTTTTCTCTACAC
CACTGTAAATGGACTCCCTAAACACATTCGAAGATTAGTTTTCTTGGATT
TTCAGAACTAAGGAACGGGATCTTGGTATAAGTCATTTAGAACGGCTTTG
TTTACGTTGATTCCAAGCATCTCATAAAAAAGATTTTCAAATAGATCTCG
TGGATGATAGCGAAATGTGCATGCATCCAATGCAAACAATGTACATCGTT
TTTCATATTGTAATGTAAGCAGATGTAAGTACACAATAATATTTTTATTT
ATCTATCACCTTTTTATAAAGGAATGTATCCTAAACAAAAACAGCTTTTT
TTCTCGCTTCTCTTTTTTCACTCGCTGTCTACCATCTTTAATTTTGTTTG
AGTTCTGTTGAATGTGGAAATCGTGTCTCCCGTATGCGTATTCCCGGAGC
TTTCAGATGGCGTGTGCTGCTTACATGAAAAAATTCGCAATCTTGTCGAA
AAATCGCAATTTCTTCTATTTTTTGAAATTCCAGATGACCTATAGATTTT
CAAATAAAGCAGCATGTGATAGATTGTAGCCTAATCTTACCCTGGGTTTA
CTAAAAAAACTTGATTGAAAAGACGAACCAGTAGGAAATCTACACTGAAC
TCTCATCCCCAATAGAAAAACACTGAAATTTTGGTCATAGATTTTGAGTC
ATAAACAATAGAATTTCAAATGCCCACCTATTATTAGCAAAAATTTTCTG
TTCTTTTGACTTTAAACTTCATTTTATCCCACTTGCTAATAAATTCTCAT
CGGGTCACTGAGACAGGGTAGTTTGAAACAAAGAATGAATAAATTATAAG
GTTAAATTCCATTTTCAATGGTAAATAATGTCACATATTTTATTCCAAAA
TAACAAATGATGGGCCTATACTTTTATGATAGAAAGCTTTTATAAAAAGA
TTGGAGTCTCGCTTTAGTAACAAAATTGAGCTAATGCCATGGGTGATATT
TTATTTCATATTTACCTGCATCTATTGATTGTTGATCTGCGTGGGAGAAC
GGAATCTCTACTTATTCCTAAAGTTCGTCCAACGTGTCTGACAATGTCTT
CCAGGGATACAACCGTTGATGTACATTGTGTCGTTTCTTTGTCACAAGTG
GGCTGCAGGAGTGTTTTGTTCAATAAACAACTTGATGCATGGAACAAGAG
TTGGATGTTTAGAATGAAGGCTTGGTCTACCGGGCCTTCTCTTTTTTCCA
TAAACTGCGAGATCTTCATCTGTAATAAAGTCTTCATTCTCCTCAAAGTC
GAAAAAACAATCCAAATCGTCATCAAGTCGAATTCCATCAGATTCCATAT
TATATTTGTTTCAACGCACGTAAAATTTAACAACGAGTATAGAACTACAA
ATAATAACACATTCGAAAATTAAAACTTAAACAACTACACCCCCTTCTAA
CAAACCCAATGAGACCCCTTCCCAGTGAAAAAAACTGGCCAAATATCATC
CCCAGCGGGAAAGAAGGGGGCGTTTATTAAATCTTACATCAACCATAAAT
CTTCACATTTTTACATATAACCATTATAGTAAAGTTGTAATTTTTTAATT
AAGTTTCAGTAAAATTAAAAGTTATTTTATTGTTATCTTTAAATTTAATG
TCAACAAAGAGCAACCTTGTGCCTCATGGATATCTTTACATGCACTGGAA
CTGACCTTATACCTGCAAGGTCTCTTGTAATAGTCTGTTTTAGTGAGTTT
TTCGAAGAAACTGTGGGGAAATTTCTTTATATGAAAACAGACAATATACA
GTCTAATTCAGGGGTTTTGCTTTGTTTTTGGTAGGCTGGCGAATGAAAAA
TTAACTCTGGCGATTTCTAGATTTTAGGCCGGCGAATTCTTAGCAAGCGC
AGTTGGAACGTCAGCGGCGAACTGAACTTTTCGAACGGCGAATTGTAATT
CTTTTATGCCTTATGCCTTTTACCTGGCGAAATTCGCCGTTCGCCGGGCC
TAAATAAGACCCCTGCTAATTGGTAGCTGCAAATATTTATTGAACAATCA
GCCAGCTTACTAGCTTTTCCTTGCTGAAAATGGGTATGATGTTTTTTGTT
GTACTCGGTATGTAAAAGAAAAGCTAGAAATAGTTCTCTACACGTAACAG
AACACAATTTTCAGAAGATTGCTTTTTTGATAAAGTGGAAATGTTATGGT
AAGTCTTTCTTTCTTTTTCAGTTTCTTTTCTTTTTTTATTGAATTGAAAA
AGTGGCCAAATTATAAAAAATATTTCTTTTTCTTCCCTCGTTCATTAATT
CTCATCTGTGGCATGTTTACCACCAACCAAGGTCTAGTAGAGATCATTTT
GTCTGCCCATTTTCACCTAGCTTGAAATTCATGCCGATTTTCTCTATTTT
TTCTTCGTAATTTTATTCTTAGGGGTCATCAAAGAAGAATCTCAGCATCA
ATTTACCCAGTAAAACGGTGAGTGATTTGTTTTTGTCATTGATATGTTCG
ATTGAAAATCTTTTCAATGAATAAAAGAAGGAAGGGGTTCAAACTGATCA
ATTTCAGTCTTTTGTATCAAAAAATCAATTTCAAAACTGGATTGTGTTCG
TTTGAGCATGCAAGTGCCCTTTCTTCTCGTGTTTTTCTTTCTATCTAGCT
TCTGATATCTGTTTTGGTGAAGTTGTCCTTTTCATGGCTTGTATTCAAAC
TCTTTTATATCACACTTGTTGTATAATTTTGGATTATTTCAATCGTCTCT
TTTACTCTCAAAAAACGTTCTTTCATAAAATTACTCTCAAGCGGTTTCTT
TAGAGTAAATCTCAACGATGCTATAAAAGATCGTTTACTTAAGATTATCT
CCCGATTAAGACTCGAGTCCATACTTTAATTTTCTCTGATGTCTTGCGAT
ATTCTTATCAAAGTCTAAATTCCTACTAGATTCCAAATNTTTTGTTGTCA
AGTGTGACTAGCTAGGCTGGTTATGATTCAGTGATAAAAAGGAGAGTTTA
GGAATTTGTTATTGGCTGTTACTGTGGTTTTGTTGTCGACTTGATAATGT
TCTCTCCTAGAGGTGAGACAAGGTTAACAAATTCAAAACAGAATGGGATA
ATATTTTCTCAGATCCCAATACAGATCTAGTATGAAAATAATGATCCTCT
TTTTTACATAATGATATATCTTGGTTTGCCCTCTGACATTTAAAGTCTGC
TCCTCATCCTCTCTTCTTCATTTCTCTACAACAGTCGATGGCTGTAAATA
CAAAAAACTTAACTTTTGGACTTTTTGCCAAAACGTGACATAACAAACGG
ATATTTCATCCTTTTTTTACCTGTTTTACCTACTTGAATTAAAAATTTTG
GAAATTAAGAATTTTGAACTGTTTGAATTTCNTGGTTTCTCATATCGAGT
TTTCAAACCTTTTTAGATGCCGTGTGTCTCAAGATTAAAAAAATGAGGAA
ACACTAGTCAATGTTGGTCGAATTATCAGGGATTGGAGTTATTCGTTTTT
ACTTCGTTTCAACTTTTAGTCGTTGTGCAATTGCTATTTATGTAGCCTTT
ATAGATTGTGACAAATTCAATTTTTACTATGATCTGAAATAAGAACTGAT
TAGCCACTAAGAAATATCTTTCAAGCTTAAAATGAAGTTCCCAATAGTTT
TTGCTGGTTTATTCGGCCAGACGCTTACATCCAGGAAAGTTTGTTTTGTT
TTTTTGCCTCGGGTTAGGAATTAAAAGTTTGCTATTTGCCATTGGCGACG
TCCACTAGCCTGCTATGGTTCTCTTTTTAGTCATTTCTAATTTTTATCGT
GTTTTTTTTTTCATTTGATCTTCTGAGAGTATTGGAACGGTATAGGGATG
TCAATTGAATCCACCTGAGTGCTTTCCAACTTGATCAAGTTACATTTTNG
CGCAATGACAATCATTTCATTTTTGGATTTTTATTTTGATGAATTTTTCA
AAAACAAAAGATCATATTCCAAACCAGAGGGAAATATGAGACGATGGAAT
TTAGGTCGTGTTATCTGTTCAACAGGGTCGACCGTTTCTTTTTTCTCCGC
ATTAAAAAAATCTTGTTTTTATAGTCAGTTCACTTGTAGTGGTTTTTGAA
GTGTATCGGAGAAACATGAATATTCTCCTTCTTTCCTTCTATCATAGTAG
AAGTCATCATGTGTCGCGCTCATTTGGTTGTCTACGTTTTGCTCCTTCTG
GCTTCGCTCTACCGAAGCACACACTCAGCTGGTACTACACCTGGTCNTAA
AA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000670XLOC_000670Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001262-exon-sc0000007-1575043694:1311034..1313700TCONS_00001262-exon-sc0000007-1575043694:1311034..1313700Clytia hemisphaericaexon
TCONS_00001262-exon-sc0000007-1575043694:1309249..1309350TCONS_00001262-exon-sc0000007-1575043694:1309249..1309350Clytia hemisphaericaexon
TCONS_00001262-exon-sc0000007-1510915933:1311034..1313700TCONS_00001262-exon-sc0000007-1510915933:1311034..1313700Clytia hemisphaericaexon
TCONS_00001262-exon-sc0000007-1510915933:1309249..1309350TCONS_00001262-exon-sc0000007-1510915933:1309249..1309350Clytia hemisphaericaexon
TCONS_00001262-exon-sc0000007-1491911889:1311034..1313700TCONS_00001262-exon-sc0000007-1491911889:1311034..1313700Clytia hemisphaericaexon
TCONS_00001262-exon-sc0000007-1491911889:1309249..1309350TCONS_00001262-exon-sc0000007-1491911889:1309249..1309350Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000007supercontigsc0000007:1309249..1313700 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.00155618	1.71713	1.26841	0.948923	9.25572e-07	0.441187	0.918552	0.381236	0.690405	5.34344e-07	2.18119	0.0156567	0	0	0.147665	0.199232	0.193428	0	0.183724	0.241762	0	0.3739	0.26841	0	1.36077e-06	1.51543	0.943357	0	0	0.155022
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00001262 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top