TCONS_00001246 (transcript) - C. hemisphaerica

Overview
NameTCONS_00001246
Unique NameTCONS_00001246
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1547

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00001246 ID=TCONS_00001246|Name=TCONS_00001246|organism=Clytia hemisphaerica|type=transcript|length=1547bp
GAATTcttaaaggcaaaaagtagttgagttCCAGCTTTTGGACTAACAGA
CATCAGACtactaaaaaaaaatattttagggtTAAGACATTGTTTGGCAG
CTTTTTCAAGACTACTTTGCAGCAGTCGGGCAACATCAATGTAAATTTCC
ACTTTCTAATGTAGTAACTAATAAAAGAAAGATATAAATTGTATGTCCTG
GTTGTTACGAGGTGCAATGGCTGTTCCAACAGTACTTCCTACAGCAAAAC
ATACTGCAACTgtAATCTTTCTGCATGGATTGGGTGATACAGGtCATGGT
TGGCTTGCAGGGTTAGATGAAATAAAACTCCCCTATGTCAAGTATATCTG
TCCAAATGCACCCATCAACAAAGTTTCACTGAATTTCGGAATGCAAATGC
CATCATGGTTTGATATCAAAAGTTTGGATTTCAAAGGGGAAGAAGATGAG
CCAGGGCTAAAGAAATCTACTGATATAGTGTTCACTTTAATCAATGAAGA
AATGAAGAGTGGAATTTCAAGTGATCGAATCATTGTTGGTGGATTCAGTC
AAGGAGGATCGGTAGCCTTTCATACATTACAAACATCAGAACATAAACTG
GCAGGATGCATTGGTCTTAGCACCTGGATGTCTATGCATGATAAATTTGA
AAAGATAACAAAACCGGTCAACAAAGATACACCTGTATTTCAAGGACACG
GAAACGCTGATCCGGTGGTGAAATATACGTACGGCCAAATGACGGAAAGT
GTACTCAAGAAATATTATacaaaaaccaaatttcaaaCTTACGGAGGACT
GGGGCATAGTTCTTCACCACAGGAAATGAGCGACGTTCAAGACTTCATCG
AAAAATGTTTACCCAAAATTTAAAGAATAATTTTTGCAATGACATTGTTA
CGCACGAACACACTTCAAACGATGCTGCATGGCAGTAAATATAGACTCTG
TTTGAGACGGTTAAATTAAGCAACTGGAAATGTGAGATACAACTTGAACA
TACTGTATCTGCTTTCAAACAGAGTTATGgaacttttcatttcatcaggg
atagattttgaaatatCGATTTTTCGTTTTAATTGAAATGGATGCAAAta
tcatttcattttttgtaagaTATATAAATTATAcgaatcaattttttgtt
tgatATATGAACCTCTCGACGAATAGAGAATACTTTTACAATTAATTTCg
cttatttttggacctacctcagggtaccccggtggaggttctataaatta
acccatgtccgttcgttcgtccgtccgtccgtccgtctgtctgcTACCAG
Ctctttctcaggattggctcattagttttttgcacaatgatgcaaaatgg
caatgcccggaacgtgacggagcccgatttttgagggaaaatttatttgg
gcaaatttgggccaaaaactacctaaaaatagggttttttggactttgtg
caaatcttgtcattacttttttctgattttttgtataaagatggagggca
agattctctaaagaatggctgaagtggtttttcccggaaaactCTTA
Run BLAST on NCBI

protein sequence of TCONS_00001246-protein

>TCONS_00001246-protein ID=TCONS_00001246-protein|Name=TCONS_00001246-protein|organism=Clytia hemisphaerica|type=polypeptide|length=226bp
MSWLLRGAMAVPTVLPTAKHTATVIFLHGLGDTGHGWLAGLDEIKLPYVK
YICPNAPINKVSLNFGMQMPSWFDIKSLDFKGEEDEPGLKKSTDIVFTLI
NEEMKSGISSDRIIVGGFSQGGSVAFHTLQTSEHKLAGCIGLSTWMSMHD
KFEKITKPVNKDTPVFQGHGNADPVVKYTYGQMTESVLKKYYTKTKFQTY
GGLGHSSSPQEMSDVQDFIEKCLPKI
Run BLAST on NCBI

transcript from alignment at sc0000007:1271240..1276275-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00001246 ID=TCONS_00001246|Name=TCONS_00001246|organism=Clytia hemisphaerica|type=transcript|length=5036bp|location=Sequence derived from alignment at sc0000007:1271240..1276275- (Clytia hemisphaerica)
GAATTCTTAAAGGCAAAAAGTAGTTGAGTTCCAGCTTTTGGACTAACAGA
CATCAGACTACTAAAAAAAAATATTTTAGGGTTAAGACATTGTTTGGCAG
CTTTTTCAAGACTACTTTGCAGCAGTCGGGCAACATCAATGTAAATTTCC
ACTTTCTAATGTAGTAACTAATAAAAGAAAGATATAAATTGTATGTCCTG
GTTGTTACGAGGTGCAATGGCTGTTCCAACAGTACTTCCTACAGCAAAAC
ATACTGCAACTGTAAGTAATTTGTTCCGTATATTTTTTTGTTTAGCGAAA
TATGAAGTGAAGGAGTCTCTGACCCCCAAGCTCAAAACTCTTTTTATAAG
TTTAATGGTATCTAATAGGAACATCCTTGCAATTGAAAATTCAGCCTGGT
AAAACTAGAGTAGATAGAAATCATTGATTTTAAACAGTTTTCACACTATG
CTTTTATTTTTAATGAAGATGATGAGATTTGGTTTCTTATGAAACTTTCA
ATATTTTTCAGGTAATCTTTCTGCATGGATTGGGTGATACAGGGTAAGCC
ATGCCATTCTTAAGAAGTTTTAGCTACAGTCTAGGATAAATGTGAAATGT
TGAGGTTTCATGAATTATGTGTTACAAAATTTAGAATTGCAGGCGATTCA
TTATCATTGGCATTTTATTTCTTTTCAGTCATGGTTGGCTTGCAGGGTTA
GATGAAATAAAACTCCCCTATGTCAAGTATATCTGTCCAAATGCGTAAGA
TGACTTTTTTTTAAATATTTTGTTATTTTTACAGACATTTCCTTAAAAGG
TGGAATTTTAGGCACATGACTGCACCTGATAGTAATTGGTTTGAACTAAT
TTCCACATCCAAAAATGAAAATAAGAGGCATCCAGTGCTAATCTCCTCAT
CAATACAAAAAGGAGATTAGGCATTGGGACGAGGTTGGATGTCTTCCACA
AGATTAAATATGAATGAAAATTTGAAAAGCTTTGTCCGCAAAATATTGTA
AACAAAGCTCCAAATAATGTTAAAAACTATTTTTTAAATGTCAGTTAGGC
TTAAAAGAAGTGCTAAAATGATGCCTATTTCAACATTCAACGTGTAAAGT
TTGGTAAAATCTTTTGATATAAAACAATAGCACCCAAAATTCTGCAAAAC
GAGCTTAATTGTAAAATGTAATCCCCGCAAGATTTTATCCCATCAAAGAA
GTCTGAGTTTTTTTAATATATTTTATTTGAAATCGAAAAAAAAAATTTAT
TTTTCCATATTTAGACCCATCAACAAAGTTTCACTGAATTTCGGAATGCA
AATGCCATCATGGTAAGAGCTAATATATGGGAACTGTCCAGATATCTTGT
AAAAGTGGAACATTAGAAGTTTTTAAACGACCATTAAGGTTCCATTAAAA
AATTCAGATTTTATTTAGATAGAGAAAGTGCAATGTTTGCCTTTCATTTC
TTTACAGTTTTCTTTCAGTNNNATCTTTTGTTTTAATAAATCAAATTAGA
GTATTTTTATATCTATATGGACTTTCATTTTTCTGGTATGCAAGAGGTCA
ATTTTGAAGGAACTCGCTTATCTTTTTTTGATCATATATCCAGATAATGG
TTGTAGATCGATTTTAGTATGTAATATTAGCTGGTTCCAGTTTAAAAGAG
ATTGGTACTTAATCGATTTCAATCCANNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTACGAGTCGGATA
TTGAACTTTGTTACAGTATGTGGCAAAGTTGGAATATCCAGGTTAATGAA
AAGAGGAGCAGATTCTGCATTAAAATCTGAAAAAGTCAAGATGATTCAGT
AAACTCTCGTCCCTTTGTTTTTCCAATTAAAAATCTGTTTTAATTTGACT
TCTAGGTTTGATATCAAAAGTTTGGATTTCAAAGGGGAAGAAGATGAGCC
AGGGCTAAAGAAATCTACTGATATAGGTGGGCAATCGAAAATACAATTGA
ATGTAAAAATAAAGAATGTTAAAATGATGTTAAAAAGTTACTCGTTTTAG
ATTGAAATGCCTTGCTTCACCTTCCCATATTACTTGAAATGTGCGTCATG
GCTGAAAAATGAAATCGATGGGAACCGTCATGTATTTATAAGCGAAGATA
TTGAAATTAGTTCCTTCTTTACCTCAATATCCCAGAAGGGCTTCTAATTC
TTACTGAATTTTCTTTCAGTGTTCACTTTAATCAATGAAGAAATGAAGAG
TGGAATTTCAAGTGATCGAATCATTGTTGGTAAGAACTCCATTCCTAACG
AGATCAAGTTTATTGCGGAATTTTCTGGCGATTTTCCATGGCCATCTAAT
AGATTTTATCGGAGTTTTTGATTTTTCTAAAAAAGCAATGCATTGTGGGA
TGTTTCGGGAGTATTACAATAGAAATCTCTTAGGAATTTCTCGAGGGAAT
TCGATTGTTATTCTCCCGAAACAATCCCACAATGCATCGCTTTTTTAGAA
AAATCAAAAACTCCAATAAGATCCTTCTTTGATTTGAAACCTTTTTCGAA
AATTTACTACCAAACAGAAGAAAAAAAATGAAGAACAATTAAGAGTTGTT
TTTTTAGANGAAAAATCAAATACTCCAATAAGATCCTTCTTTGATTTGAA
ACCTTTTTCGAAAATTTACTACCAAACAGAAGAAAAAAAATGAAGAACAA
TTAAGGTCTTTTTGACGTTTGGTTGAGCTGTTCAAACCACGTGTTTTATC
ATTTTTATTTGCACGAAACTTTCTCCAAATTTTATTTAAAGGTGGATTCA
GTCAAGGAGGATCGGTAGCCTTTCATACATTACAAACATCAGAACATAAA
CTGGCAGGATGCATTGGTCTTAGCACCTGGATGTCTATGCATGATAAATT
TGAAAAGGTTAGTGGGTTTTTTCAGTAAGATTATTAAAAAGGAATTTCGC
TGCTGAAATTCTCTGAAAAAATAAGGAATATCCAGGCTATGAGCTAACTT
AAGGTTCTTATCAAAAGTGTATATCATAATAAAAACCCAATTTTCTTCAA
AAATACAGGAACTGAAATACAAAAGAATATTTTCCTTTGAGAATACGGAT
GAATAGAAATATTTTGGGACATTGCCTCTGAACAGGACAAATAGCATATC
ACTAAGGCTCAGTGACTCTTACTATACAAAAGTATCTCAAATTGAACTTA
TTTTTAAATTAAACATGGACCAAATTTTTAGATCTTCAAATACCGTATTA
CTTTGCCCCCGGGTGTCTAAGAAGTGTCACTAGTCAAGATAAGAAATTAG
TCAAAATTAGTTTAAATGTCGAAAGAATGCAATCGTTAACATATCTCTTT
TTTTTCCCGCGTTCATTCGACGAAGTTAGACGGTACTTTACTATTATTTT
CAGATAACAAAACCGGTCAACAAAGATACACCTGTATTTCAAGGACACGG
TAATATATTGTCAATAGTTTAGCATAGTCGGGGTACTTGACCAAAGCATA
TCAATTCTCGATATTTTATATCATCGTCAGTAATTATTTAGTTCTTAAAC
TCAACTAGAGTTTGGTTGGTGTTTTTTTTAATTGTACATCATTAAATGTC
TTGTGTGTTAATGATTTTGTGCCAAGTTCTTGTGGTGTCATTCTAACTTC
TTATCCCCCCATTCAATTCATTCTTCAGTAGCCGAGGGGGCCCGCATTTT
ATCAGACATTCAGAAAAAATTTGACTGATTTTCGAAATGCCAAGGGAAAA
CCACTTGTTCTTGACACAAGTCAATCTCTTCTTCACCGTTTATCTTCTCT
TCTCGCCCTTCTTATGTCCTCTCAGGAAACGCTGATCCGGTGGTGAAATA
TACGTACGGCCAAATGACGGAAAGTGTACTCAAGAAATATTATACAAAAA
CCAAATTTCAAACTTACGGAGGACTGGGGCATAGTTCTTCACCACAGGTC
AGTATAAGATTCGATTCGAATAACATTTGTACGTACTGAACGAAGAGCTT
AATTTTGACAGTTTTAATAGATGGTTAAATGTTTTTCTTAAATCGCCCAA
CTCTTGTATGTCTTAAAAAATTCATGTTAGATTATTGATTTCTTTTGGTT
TGTTTCTTTAGGAAATGAGCGACGTTCAAGACTTCATCGAAAAATGTTTA
CCCAAAATTTAAAGAATAATTTTTGCAATGACATTGTTACGCACGAACAC
ACTTCAAACGATGCTGCATGGCAGTAAATATAGACTCTGTTTGAGACGGT
TAAATTAAGCAACTGGAAATGTGAGATACAACTTGAACATACTGTATCTG
CTTTCAAACAGAGTTATGGAACTTTTCATTTCATCAGGGATAGATTTTGA
AATATCGATTTTTCGTTTTAATTGAAATGGATGCAAATATCATTTCATTT
TTTGTAAGATATATAAATTATACGAATCAATTTTTTGTTTGATATATGAA
CCTCTCGACGAATAGAGAATACTTTTACAATTAATTTCGCTTATTTTTGG
ACCTACCTCAGGGTACCCCGGTGGAGGTTCTATAAATTAACCCATGTCCG
TTCGTTCGTCCGTCCGTCCGTCCGTCTGTCTGCTACCAGCTCTTTCTCAG
GATTGGCTCATTAGTTTTTTGCACAATGATGCAAAATGGCAATGCCCGGA
ACGTGACGGAGCCCGATTTTTGAGGGAAAATTTATTTGGGCAAATTTGGG
CCAAAAACTACCTAAAAATAGGGTTTTTTGGACTTTGTGCAAATCTTGTC
ATTACTTTTTTCTGATTTTTTGTATAAAGATGGAGGGCAAGATTCTCTAA
AGAATGGCTGAAGTGGTTTTTCCCGGAAAACTCTTA

Coding sequence (CDS) from alignment at sc0000007:1271240..1276275-

>TCONS_00001246 ID=TCONS_00001246|Name=TCONS_00001246|organism=Clytia hemisphaerica|type=CDS|length=6810bp|location=Sequence derived from alignment at sc0000007:1271240..1276275- (Clytia hemisphaerica)
GAAATGAGCGACGTTCAAGACTTCATCGAAAAATGTTTACCCAAAATTTA
AGAAACGCTGATCCGGTGGTGAAATATACGTACGGCCAAATGACGGAAAG
TGTACTCAAGAAATATTATACAAAAACCAAATTTCAAACTTACGGAGGAC
TGGGGCATAGTTCTTCACCACAGATAACAAAACCGGTCAACAAAGATACA
CCTGTATTTCAAGGACACGGTGGATTCAGTCAAGGAGGATCGGTAGCCTT
TCATACATTACAAACATCAGAACATAAACTGGCAGGATGCATTGGTCTTA
GCACCTGGATGTCTATGCATGATAAATTTGAAAAGTGTTCACTTTAATCA
ATGAAGAAATGAAGAGTGGAATTTCAAGTGATCGAATCATTGTTGGTTTG
ATATCAAAAGTTTGGATTTCAAAGGGGAAGAAGATGAGCCAGGGCTAAAG
AAATCTACTGATATAGACCCATCAACAAAGTTTCACTGAATTTCGGAATG
CAAATGCCATCATGTCATGGTTGGCTTGCAGGGTTAGATGAAATAAAACT
CCCCTATGTCAAGTATATCTGTCCAAATGCGTAATCTTTCTGCATGGATT
GGGTGATACAGGATGTCCTGGTTGTTACGAGGTGCAATGGCTGTTCCAAC
AGTACTTCCTACAGCAAAACATACTGCAACTGAAATGAGCGACGTTCAAG
ACTTCATCGAAAAATGTTTACCCAAAATTTAAGAAACGCTGATCCGGTGG
TGAAATATACGTACGGCCAAATGACGGAAAGTGTACTCAAGAAATATTAT
ACAAAAACCAAATTTCAAACTTACGGAGGACTGGGGCATAGTTCTTCACC
ACAGATAACAAAACCGGTCAACAAAGATACACCTGTATTTCAAGGACACG
GTGGATTCAGTCAAGGAGGATCGGTAGCCTTTCATACATTACAAACATCA
GAACATAAACTGGCAGGATGCATTGGTCTTAGCACCTGGATGTCTATGCA
TGATAAATTTGAAAAGTGTTCACTTTAATCAATGAAGAAATGAAGAGTGG
AATTTCAAGTGATCGAATCATTGTTGGTTTGATATCAAAAGTTTGGATTT
CAAAGGGGAAGAAGATGAGCCAGGGCTAAAGAAATCTACTGATATAGACC
CATCAACAAAGTTTCACTGAATTTCGGAATGCAAATGCCATCATGTCATG
GTTGGCTTGCAGGGTTAGATGAAATAAAACTCCCCTATGTCAAGTATATC
TGTCCAAATGCGTAATCTTTCTGCATGGATTGGGTGATACAGGATGTCCT
GGTTGTTACGAGGTGCAATGGCTGTTCCAACAGTACTTCCTACAGCAAAA
CATACTGCAACTGAAATGAGCGACGTTCAAGACTTCATCGAAAAATGTTT
ACCCAAAATTTAAGAAACGCTGATCCGGTGGTGAAATATACGTACGGCCA
AATGACGGAAAGTGTACTCAAGAAATATTATACAAAAACCAAATTTCAAA
CTTACGGAGGACTGGGGCATAGTTCTTCACCACAGATAACAAAACCGGTC
AACAAAGATACACCTGTATTTCAAGGACACGGTGGATTCAGTCAAGGAGG
ATCGGTAGCCTTTCATACATTACAAACATCAGAACATAAACTGGCAGGAT
GCATTGGTCTTAGCACCTGGATGTCTATGCATGATAAATTTGAAAAGTGT
TCACTTTAATCAATGAAGAAATGAAGAGTGGAATTTCAAGTGATCGAATC
ATTGTTGGTTTGATATCAAAAGTTTGGATTTCAAAGGGGAAGAAGATGAG
CCAGGGCTAAAGAAATCTACTGATATAGACCCATCAACAAAGTTTCACTG
AATTTCGGAATGCAAATGCCATCATGTCATGGTTGGCTTGCAGGGTTAGA
TGAAATAAAACTCCCCTATGTCAAGTATATCTGTCCAAATGCGTAATCTT
TCTGCATGGATTGGGTGATACAGGATGTCCTGGTTGTTACGAGGTGCAAT
GGCTGTTCCAACAGTACTTCCTACAGCAAAACATACTGCAACTGAAATGA
GCGACGTTCAAGACTTCATCGAAAAATGTTTACCCAAAATTTAAGAAACG
CTGATCCGGTGGTGAAATATACGTACGGCCAAATGACGGAAAGTGTACTC
AAGAAATATTATACAAAAACCAAATTTCAAACTTACGGAGGACTGGGGCA
TAGTTCTTCACCACAGATAACAAAACCGGTCAACAAAGATACACCTGTAT
TTCAAGGACACGGTGGATTCAGTCAAGGAGGATCGGTAGCCTTTCATACA
TTACAAACATCAGAACATAAACTGGCAGGATGCATTGGTCTTAGCACCTG
GATGTCTATGCATGATAAATTTGAAAAGTGTTCACTTTAATCAATGAAGA
AATGAAGAGTGGAATTTCAAGTGATCGAATCATTGTTGGTTTGATATCAA
AAGTTTGGATTTCAAAGGGGAAGAAGATGAGCCAGGGCTAAAGAAATCTA
CTGATATAGACCCATCAACAAAGTTTCACTGAATTTCGGAATGCAAATGC
CATCATGTCATGGTTGGCTTGCAGGGTTAGATGAAATAAAACTCCCCTAT
GTCAAGTATATCTGTCCAAATGCGTAATCTTTCTGCATGGATTGGGTGAT
ACAGGATGTCCTGGTTGTTACGAGGTGCAATGGCTGTTCCAACAGTACTT
CCTACAGCAAAACATACTGCAACTGAAATGAGCGACGTTCAAGACTTCAT
CGAAAAATGTTTACCCAAAATTTAAGAAACGCTGATCCGGTGGTGAAATA
TACGTACGGCCAAATGACGGAAAGTGTACTCAAGAAATATTATACAAAAA
CCAAATTTCAAACTTACGGAGGACTGGGGCATAGTTCTTCACCACAGATA
ACAAAACCGGTCAACAAAGATACACCTGTATTTCAAGGACACGGTGGATT
CAGTCAAGGAGGATCGGTAGCCTTTCATACATTACAAACATCAGAACATA
AACTGGCAGGATGCATTGGTCTTAGCACCTGGATGTCTATGCATGATAAA
TTTGAAAAGTGTTCACTTTAATCAATGAAGAAATGAAGAGTGGAATTTCA
AGTGATCGAATCATTGTTGGTTTGATATCAAAAGTTTGGATTTCAAAGGG
GAAGAAGATGAGCCAGGGCTAAAGAAATCTACTGATATAGACCCATCAAC
AAAGTTTCACTGAATTTCGGAATGCAAATGCCATCATGTCATGGTTGGCT
TGCAGGGTTAGATGAAATAAAACTCCCCTATGTCAAGTATATCTGTCCAA
ATGCGTAATCTTTCTGCATGGATTGGGTGATACAGGATGTCCTGGTTGTT
ACGAGGTGCAATGGCTGTTCCAACAGTACTTCCTACAGCAAAACATACTG
CAACTGAAATGAGCGACGTTCAAGACTTCATCGAAAAATGTTTACCCAAA
ATTTAAGAAACGCTGATCCGGTGGTGAAATATACGTACGGCCAAATGACG
GAAAGTGTACTCAAGAAATATTATACAAAAACCAAATTTCAAACTTACGG
AGGACTGGGGCATAGTTCTTCACCACAGATAACAAAACCGGTCAACAAAG
ATACACCTGTATTTCAAGGACACGGTGGATTCAGTCAAGGAGGATCGGTA
GCCTTTCATACATTACAAACATCAGAACATAAACTGGCAGGATGCATTGG
TCTTAGCACCTGGATGTCTATGCATGATAAATTTGAAAAGTGTTCACTTT
AATCAATGAAGAAATGAAGAGTGGAATTTCAAGTGATCGAATCATTGTTG
GTTTGATATCAAAAGTTTGGATTTCAAAGGGGAAGAAGATGAGCCAGGGC
TAAAGAAATCTACTGATATAGACCCATCAACAAAGTTTCACTGAATTTCG
GAATGCAAATGCCATCATGTCATGGTTGGCTTGCAGGGTTAGATGAAATA
AAACTCCCCTATGTCAAGTATATCTGTCCAAATGCGTAATCTTTCTGCAT
GGATTGGGTGATACAGGATGTCCTGGTTGTTACGAGGTGCAATGGCTGTT
CCAACAGTACTTCCTACAGCAAAACATACTGCAACTGAAATGAGCGACGT
TCAAGACTTCATCGAAAAATGTTTACCCAAAATTTAAGAAACGCTGATCC
GGTGGTGAAATATACGTACGGCCAAATGACGGAAAGTGTACTCAAGAAAT
ATTATACAAAAACCAAATTTCAAACTTACGGAGGACTGGGGCATAGTTCT
TCACCACAGATAACAAAACCGGTCAACAAAGATACACCTGTATTTCAAGG
ACACGGTGGATTCAGTCAAGGAGGATCGGTAGCCTTTCATACATTACAAA
CATCAGAACATAAACTGGCAGGATGCATTGGTCTTAGCACCTGGATGTCT
ATGCATGATAAATTTGAAAAGTGTTCACTTTAATCAATGAAGAAATGAAG
AGTGGAATTTCAAGTGATCGAATCATTGTTGGTTTGATATCAAAAGTTTG
GATTTCAAAGGGGAAGAAGATGAGCCAGGGCTAAAGAAATCTACTGATAT
AGACCCATCAACAAAGTTTCACTGAATTTCGGAATGCAAATGCCATCATG
TCATGGTTGGCTTGCAGGGTTAGATGAAATAAAACTCCCCTATGTCAAGT
ATATCTGTCCAAATGCGTAATCTTTCTGCATGGATTGGGTGATACAGGAT
GTCCTGGTTGTTACGAGGTGCAATGGCTGTTCCAACAGTACTTCCTACAG
CAAAACATACTGCAACTGAAATGAGCGACGTTCAAGACTTCATCGAAAAA
TGTTTACCCAAAATTTAAGAAACGCTGATCCGGTGGTGAAATATACGTAC
GGCCAAATGACGGAAAGTGTACTCAAGAAATATTATACAAAAACCAAATT
TCAAACTTACGGAGGACTGGGGCATAGTTCTTCACCACAGATAACAAAAC
CGGTCAACAAAGATACACCTGTATTTCAAGGACACGGTGGATTCAGTCAA
GGAGGATCGGTAGCCTTTCATACATTACAAACATCAGAACATAAACTGGC
AGGATGCATTGGTCTTAGCACCTGGATGTCTATGCATGATAAATTTGAAA
AGTGTTCACTTTAATCAATGAAGAAATGAAGAGTGGAATTTCAAGTGATC
GAATCATTGTTGGTTTGATATCAAAAGTTTGGATTTCAAAGGGGAAGAAG
ATGAGCCAGGGCTAAAGAAATCTACTGATATAGACCCATCAACAAAGTTT
CACTGAATTTCGGAATGCAAATGCCATCATGTCATGGTTGGCTTGCAGGG
TTAGATGAAATAAAACTCCCCTATGTCAAGTATATCTGTCCAAATGCGTA
ATCTTTCTGCATGGATTGGGTGATACAGGATGTCCTGGTTGTTACGAGGT
GCAATGGCTGTTCCAACAGTACTTCCTACAGCAAAACATACTGCAACTGA
AATGAGCGACGTTCAAGACTTCATCGAAAAATGTTTACCCAAAATTTAAG
AAACGCTGATCCGGTGGTGAAATATACGTACGGCCAAATGACGGAAAGTG
TACTCAAGAAATATTATACAAAAACCAAATTTCAAACTTACGGAGGACTG
GGGCATAGTTCTTCACCACAGATAACAAAACCGGTCAACAAAGATACACC
TGTATTTCAAGGACACGGTGGATTCAGTCAAGGAGGATCGGTAGCCTTTC
ATACATTACAAACATCAGAACATAAACTGGCAGGATGCATTGGTCTTAGC
ACCTGGATGTCTATGCATGATAAATTTGAAAAGTGTTCACTTTAATCAAT
GAAGAAATGAAGAGTGGAATTTCAAGTGATCGAATCATTGTTGGTTTGAT
ATCAAAAGTTTGGATTTCAAAGGGGAAGAAGATGAGCCAGGGCTAAAGAA
ATCTACTGATATAGACCCATCAACAAAGTTTCACTGAATTTCGGAATGCA
AATGCCATCATGTCATGGTTGGCTTGCAGGGTTAGATGAAATAAAACTCC
CCTATGTCAAGTATATCTGTCCAAATGCGTAATCTTTCTGCATGGATTGG
GTGATACAGGATGTCCTGGTTGTTACGAGGTGCAATGGCTGTTCCAACAG
TACTTCCTACAGCAAAACATACTGCAACTGAAATGAGCGACGTTCAAGAC
TTCATCGAAAAATGTTTACCCAAAATTTAAGAAACGCTGATCCGGTGGTG
AAATATACGTACGGCCAAATGACGGAAAGTGTACTCAAGAAATATTATAC
AAAAACCAAATTTCAAACTTACGGAGGACTGGGGCATAGTTCTTCACCAC
AGATAACAAAACCGGTCAACAAAGATACACCTGTATTTCAAGGACACGGT
GGATTCAGTCAAGGAGGATCGGTAGCCTTTCATACATTACAAACATCAGA
ACATAAACTGGCAGGATGCATTGGTCTTAGCACCTGGATGTCTATGCATG
ATAAATTTGAAAAGTGTTCACTTTAATCAATGAAGAAATGAAGAGTGGAA
TTTCAAGTGATCGAATCATTGTTGGTTTGATATCAAAAGTTTGGATTTCA
AAGGGGAAGAAGATGAGCCAGGGCTAAAGAAATCTACTGATATAGACCCA
TCAACAAAGTTTCACTGAATTTCGGAATGCAAATGCCATCATGTCATGGT
TGGCTTGCAGGGTTAGATGAAATAAAACTCCCCTATGTCAAGTATATCTG
TCCAAATGCGTAATCTTTCTGCATGGATTGGGTGATACAGGATGTCCTGG
TTGTTACGAGGTGCAATGGCTGTTCCAACAGTACTTCCTACAGCAAAACA
TACTGCAACT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000667XLOC_000667Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001246-proteinTCONS_00001246-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001246-exon-sc0000007-1575043694:1276015..1276275TCONS_00001246-exon-sc0000007-1575043694:1276015..1276275Clytia hemisphaericaexon
TCONS_00001246-exon-sc0000007-1575043694:1275733..1275764TCONS_00001246-exon-sc0000007-1575043694:1275733..1275764Clytia hemisphaericaexon
TCONS_00001246-exon-sc0000007-1575043694:1275532..1275597TCONS_00001246-exon-sc0000007-1575043694:1275532..1275597Clytia hemisphaericaexon
TCONS_00001246-exon-sc0000007-1575043694:1274964..1275011TCONS_00001246-exon-sc0000007-1575043694:1274964..1275011Clytia hemisphaericaexon
TCONS_00001246-exon-sc0000007-1575043694:1274100..1274170TCONS_00001246-exon-sc0000007-1575043694:1274100..1274170Clytia hemisphaericaexon
TCONS_00001246-exon-sc0000007-1575043694:1273797..1273856TCONS_00001246-exon-sc0000007-1575043694:1273797..1273856Clytia hemisphaericaexon
TCONS_00001246-exon-sc0000007-1575043694:1273169..1273284TCONS_00001246-exon-sc0000007-1575043694:1273169..1273284Clytia hemisphaericaexon
TCONS_00001246-exon-sc0000007-1575043694:1272627..1272672TCONS_00001246-exon-sc0000007-1575043694:1272627..1272672Clytia hemisphaericaexon
TCONS_00001246-exon-sc0000007-1575043694:1272129..1272250TCONS_00001246-exon-sc0000007-1575043694:1272129..1272250Clytia hemisphaericaexon
TCONS_00001246-exon-sc0000007-1575043694:1271240..1271964TCONS_00001246-exon-sc0000007-1575043694:1271240..1271964Clytia hemisphaericaexon
TCONS_00001246-exon-sc0000007-1510915933:1276015..1276275TCONS_00001246-exon-sc0000007-1510915933:1276015..1276275Clytia hemisphaericaexon
TCONS_00001246-exon-sc0000007-1510915933:1275733..1275764TCONS_00001246-exon-sc0000007-1510915933:1275733..1275764Clytia hemisphaericaexon
TCONS_00001246-exon-sc0000007-1510915933:1275532..1275597TCONS_00001246-exon-sc0000007-1510915933:1275532..1275597Clytia hemisphaericaexon
TCONS_00001246-exon-sc0000007-1510915933:1274964..1275011TCONS_00001246-exon-sc0000007-1510915933:1274964..1275011Clytia hemisphaericaexon
TCONS_00001246-exon-sc0000007-1510915933:1274100..1274170TCONS_00001246-exon-sc0000007-1510915933:1274100..1274170Clytia hemisphaericaexon
TCONS_00001246-exon-sc0000007-1510915933:1273797..1273856TCONS_00001246-exon-sc0000007-1510915933:1273797..1273856Clytia hemisphaericaexon
TCONS_00001246-exon-sc0000007-1510915933:1273169..1273284TCONS_00001246-exon-sc0000007-1510915933:1273169..1273284Clytia hemisphaericaexon
TCONS_00001246-exon-sc0000007-1510915933:1272627..1272672TCONS_00001246-exon-sc0000007-1510915933:1272627..1272672Clytia hemisphaericaexon
TCONS_00001246-exon-sc0000007-1510915933:1272129..1272250TCONS_00001246-exon-sc0000007-1510915933:1272129..1272250Clytia hemisphaericaexon
TCONS_00001246-exon-sc0000007-1510915933:1271240..1271964TCONS_00001246-exon-sc0000007-1510915933:1271240..1271964Clytia hemisphaericaexon
TCONS_00001246-exon-sc0000007-1491911889:1276015..1276275TCONS_00001246-exon-sc0000007-1491911889:1276015..1276275Clytia hemisphaericaexon
TCONS_00001246-exon-sc0000007-1491911889:1275733..1275764TCONS_00001246-exon-sc0000007-1491911889:1275733..1275764Clytia hemisphaericaexon
TCONS_00001246-exon-sc0000007-1491911889:1275532..1275597TCONS_00001246-exon-sc0000007-1491911889:1275532..1275597Clytia hemisphaericaexon
TCONS_00001246-exon-sc0000007-1491911889:1274964..1275011TCONS_00001246-exon-sc0000007-1491911889:1274964..1275011Clytia hemisphaericaexon
TCONS_00001246-exon-sc0000007-1491911889:1274100..1274170TCONS_00001246-exon-sc0000007-1491911889:1274100..1274170Clytia hemisphaericaexon
TCONS_00001246-exon-sc0000007-1491911889:1273797..1273856TCONS_00001246-exon-sc0000007-1491911889:1273797..1273856Clytia hemisphaericaexon
TCONS_00001246-exon-sc0000007-1491911889:1273169..1273284TCONS_00001246-exon-sc0000007-1491911889:1273169..1273284Clytia hemisphaericaexon
TCONS_00001246-exon-sc0000007-1491911889:1272627..1272672TCONS_00001246-exon-sc0000007-1491911889:1272627..1272672Clytia hemisphaericaexon
TCONS_00001246-exon-sc0000007-1491911889:1272129..1272250TCONS_00001246-exon-sc0000007-1491911889:1272129..1272250Clytia hemisphaericaexon
TCONS_00001246-exon-sc0000007-1491911889:1271240..1271964TCONS_00001246-exon-sc0000007-1491911889:1271240..1271964Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000007supercontigsc0000007:1271240..1276275 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
131.049	129.019	89.529	85.5224	50.0845	38.2522	72.0148	79.1795	75.2809	62.2208	70.3598	70.1456	69.1765	76.0928	62.6324	58.3222	75.5483	79.3505	69.3982	59.4552	69.9282	67.137	74.3101	74.9715	58.6811	60.9181	65.613	51.9823	51.4956	50.0928
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR029058AB_hydrolase
IPR003140PLipase/COase/thioEstase
Vocabulary: Molecular Function
TermDefinition
GO:0016787hydrolase activity
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0016787 hydrolase activity
Blast
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BLAST of TCONS_00001246 vs. Swiss-Prot (Human)
Match: LYPA2 (Acyl-protein thioesterase 2 OS=Homo sapiens GN=LYPLA2 PE=1 SV=1)

HSP 1 Score: 211.46 bits (537), Expect = 3.629e-64
Identity = 101/216 (46.76%), Postives = 138/216 (63.89%), Query Frame = 1 
Query:  229 TVLPTAKHTATVIFLHGLGDTGHGWLAGLDEIKLPYVKYICPNAPINKVSLNFGMQMPSWFDIKSLDFKGEEDEPGLKKSTDIVFTLINEEMKSGISSDRIIVGGFSQGGSVAFHTLQTSEHKLAGCIGLSTWMSMHDKFEKITKPVNKDTPVFQGHGNADPVVKYTYGQMTESVLXXXX--XXXXFQTYGGLGHSSSPQEMSDVQDFIEKCLPKI 870
            TV    + TA VIFLHGLGDTGH W   L  I+LP+VKYICP+AP   V+LN  M MPSWFD+  L     EDE G+KK+ + +  LI  EMK+GI ++RI++GGFSQGG+++ +T  T  H LAG + LS W+ +H  F +      KD  + Q HG  DP+V   +G +T   L+      + +F+TY G+ HSS PQEM+ V++F+EK LP +
Sbjct:   16 TVSGAERETAAVIFLHGLGDTGHSWADALSTIRLPHVKYICPHAPRIPVTLNMKMVMPSWFDLMGLSPDAPEDEAGIKKAAENIKALIEHEMKNGIPANRIVLGGFSQGGALSLYTALTCPHPLAGIVALSCWLPLHRAFPQAANGSAKDLAILQCHGELDPMVPVRFGALTAEKLRSVVTPARVQFKTYPGVMHSSCPQEMAAVKEFLEKLLPPV 231
The following BLAST results are available for this feature:
BLAST of TCONS_00001246 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
LYPA23.629e-6446.76Acyl-protein thioesterase 2 OS=Homo sapiens GN=LYP... [more]
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