TCONS_00001243 (transcript) - C. hemisphaerica

Overview
NameTCONS_00001243
Unique NameTCONS_00001243
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1055

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00001243 ID=TCONS_00001243|Name=TCONS_00001243|organism=Clytia hemisphaerica|type=transcript|length=1055bp
GGAAGAGGAACTAAGATTTAGTTTCATCATTTCAAAACACTTCTTCAATG
TATTGGACTTTAATTCAGACATCAATTAGAGGTTTTCACAATTAATGTGA
ATATCTGTTGATTAATCAAACTATAACATGATAAAAGACAACCGTCGAAA
CGTTGTATACACTCAGGgtatttcttatgttttactTTTGATTAAACTAC
GTAGATAGAAATAAACGAAAATATGGAGATAGCATCATCATACATTCATG
TTGAACAGACACTAGCAATTATCAAACCAGATGCCATCGAAAATGCTTCT
GAAATTGAAGAAAGAGTTTTGAACGAGGGATTCACTATATTGCAGACTCG
AAGAGTGCACTTGACGCCAGAACAAACAAGTGAATTTTATGTTGAGCATT
ATGGAAAAATGTTCTTCCCTAGCCTGGTTGCTTTTATGAGCAgTGGTGAC
ATATTAGCCATGATATTAGCCAGGAAGAACGGCATCAAACATTGGAGAAG
TGTCATTGGACCAACACAAACTTCAAAAGCAAGAGATGAAGCACCAGATA
GTTTGAGAGCTTTATATGGAACAGACAACCAACGAAATGCTGTCCATGGT
AGTGATAGTCCTGATTCTGCGTTGAGGGAAATTCATTTCTTTTTCCCTAA
TGCTATCTTGGAGCCTTTACCAACGAGCACAGAAGCAAAAGATTACCTAA
CACGTGACGTCAATCCAACCTTATTGCAAGGACTCACTGAACTATGCAAA
AGAAAACCTACTGACCCTTTGATCTGGTTGTCTGACTGGTTAGCAGAAAA
CAACCCCAACAAACCAATCATCAGAGAACCAGGTGAAATTACAGAACCTT
CTTCAGATTGAGGCTTTCGctgaaaaacttttattttattgtacATAACT
GTTTGATTACTTTGGTGATTCGTGTAAATAAAAGACTGCTAAATTATGAT
CATTATTTGCTAATTCTAATTCTTCTCTGAAATATCCATCTTGATATAAT
TCCATGTATTGACCATTAGGAATCAGGACTGCTTGTGCTTAGATACAAAT
TGCGG
Run BLAST on NCBI

transcript from alignment at sc0000007:1213442..1217810-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00001243 ID=TCONS_00001243|Name=TCONS_00001243|organism=Clytia hemisphaerica|type=transcript|length=4369bp|location=Sequence derived from alignment at sc0000007:1213442..1217810- (Clytia hemisphaerica)
GGAAGAGGAACTAAGATTTAGTTTCATCATTTCAAAACACTTCTTCAATG
TATTGGACTTTAATTCAGACATCAATTAGAGGTTTTCACAATTAATGTGA
ATATCTGTTGATTAATCAAACTATAACATGATAAAAGACAACCGTCGAAA
CGTTGTATACACTCAGGGTATTTCTTATGTTTTACTTTTGATTAAACTAC
GTAGATAGAAATAAACGAAAATATGGAGATAGCATCATCATACATTCATG
TTGAACAGACACTAGCAATTATCAAACCAGATGCCATCGAAAATGCTTCT
GAAATTGAAGAAAGAGTTTTGAACGAGGGATTCACTATATTGCAGGTTAT
TATTAGTGTTATATCACAATGTTCTTTTGTTATGATAATTTATTAAAATC
TCTTTCATTATTTTCAAGGATTCTCCTGGATTCTCCGACTCGAATAGTTT
TGAATCCCAAACCCATATAACATTTAGTTTGTCTTACTTTTTTATTTTGC
TTGTTTATTCCTTTCTTTGTTTGTCAGTTAGTTGTAAAGAGTTGTCATTT
TGTTCCCTGTGAATTTATGATTTTTTGGTCTTTTGGGCTGGCAAAATTCA
TCAATTGCCTGACCGTACCTCACCCGTGTTAGTAAAACTTTTACAGTCCG
AATGAAACAAATTTTTATCATTTATATATTCACAGACTCGAAGAGTGCAC
TTGACGCCAGAACAAACAAGTGAATTTTATGTTGAGCATTATGGAAAAAT
GTTCTTCCCTAGCCTGGTTGCTTTTATGAGCAGGTTTGTATATTTTTATA
CATATATCATTAGTTTCTTCACTCGATTAGAGCTTAATCAGTCAAGTAAT
CCAAAAAATGTTGTGAATATTGAATTATGAATTATTTCATTTCTAGTGGT
GACATATTAGCCATGATATTAGCCAGGAAGAACGGCATCAAACATTGGAG
AAGTGTCATTGGACCAACACAAACTTCAAAAGCAAGAGATGAAGCACCAG
ATAGGTAAATTATGATATCAAATTACTCTTGAAAATACGGGAAGGGCTCC
CTTTCTCAAGCGATGAAGGATTTATAGACCGGGTCGAAAATTACTAAATT
ATACCCGAAAGAGTCGACTCTTGGTAATTTTAACCACCTTAGGGCAGATT
CCAGAAAACTATTTGTTTTCAAAACGATAACAATCAATAATAGACCTTTC
CCGAAAGCCACCTAAAAATTAACTTCTGTAAAATGTAAATTATATATGAT
TAATCTAACAGCACAGTTCAGCTTTTTTTGGTCTAATGAGAAATCCCTGA
AAATTTTGTTTCATTTTGTCCACTAGATCAAAAGATATTTCACTTTCGTT
TTCTACAAAATTTCACTTATTTTGTAAGCGTCCGATTATTTTCCATACCC
CGCCTCGTTTTCATGTAAACATGATTTAAACCTTTATTGTGAAGCAATGA
GAAATGCTTTTAATTTGAAATTTTCACAAGATACTCACTTTTATATGAAC
TACTTGTTAAAGAAAAAATCGTTTTGAAATTCCAAGTTTAAATTTTGAGA
TGACGTCATAAAATTATTTATCACGTGATAGGTTTCGGGAAAGGTCTATT
ATAGTGGTTATCTTTTCTAATAATCACTCTTATACTTAGTCTATGTAAGA
CTGATAATCACACGAGTGTAGGTGAAAAATCTGAATGCGATAAGTTGAAG
ATACCAAAACATCACGTACGCAGAACTTGACCTAATTAATTTTTAGGATA
GAAACGAATTATTAAATGGTCTTCTTTCAAAAGAAAATGTTATATTTTGA
ACAGCGGAATAATTTTAAAACTGAAATGTAGGCAGTTTGTTGACCAATTT
GAGCATTAAACATAAAAGAAAGAATGATTATTAAATTTAGCAGAAGATCT
AGGTTGATATCATATTTGTCTTGTTCACAATGTCTAGACATTACTTTGAA
TTTTGATTTCGCACGCTACAATTTCTTCTTCCAGTTTGAGAGCTTTATAT
GGAACAGACAACCAACGAAATGCTGTCCATGGTAGTGATAGTCCTGATTC
TGCGTTGAGGGAAATTCATTTCTTTTTCCCTAATGGTAAGAAGACACTTT
TCACGTCTTTCCTTATACGTTATAGCCATATATGAGCACCCAAGACATTT
TCACCAAGCCCAACACACGCGCAATACTAAACGATATGTTACGTCAAATC
CGGGTACTTAAGTCTCATAAGATTAGAGATATTAAATCATCTAATGGTAT
GGCACACTTTATCATGACGTCAACCCTTTTCCGATCAACCAAACATCCCA
TGCTTTGATTCTGCTACACCTCATTTTTATTTGGATTTTCGGTCATCTTG
ATTAGCCTTAGAAACATAAACGTGCCTGTTTTTCTTGTCTTAACTTTTTC
CCGAAAGGAAACTAATATAAAAATAGCAGCTCTCATCAAAATGAAACCTT
TGATCCAACCGAACCACTCGACTTAAGGTGTTGAGGAATTTTTCATTTTG
TTATCTCTTTTTTTTTTTGAAAATGAGCCAAAATTTCTCCTTTCATCGCC
AACTTTAGTTTACGGTATCGAGTCAATGCACTTGAACTCATCTTATAATG
TTTAAACACGAGAAAAAACGTGTCATGTCTAACTGTAAGCCTTCGAAATT
ATATAAAAATGCAAAAGGCCCCGTTTGTCTTCTCCTGTTTCATCCTTCGA
TGCCAAGAATTTATATCTATATATCCACTTTTTAAATACTTCTAGCTATC
TTGGAGCCTTTACCAACGAGCACAGAAGCAAAAGATTACCTAACACGTGA
CGTCAATCCAACCTTATTGCAAGGACTCACTGAACTATGCAAAAGAAAAC
CTACTGACCCTTTGGTAATTATCTAATCTGTAATAGTGTGTACTTCGTGT
ATGATGTAGCGACAATGAGTTTTGAAATTTCCGGATTCTACGTCATAGAG
AAGTAAGCTCTAATTTAGACGGCCCACTTTTTGCCCTGCCTATTCTAATT
GTGAATTAAGGTGAGCATAAAGTGGACTGTTTAAAGTCAATGCCCTCTTT
TGACGTCAATACAATGTCTTCTTTCAATCTTTTTGAAGCAAAGAATTTAA
CCGCCCACTTTGTGCCCGCTTTGTGCCTACTCTTACAATTAGAATAGGCA
GGGCGAAAGGTGAGCCGTCTAAACTAGAGCTAACAGAACAGTAACTTTTT
TCGATCATGCGTACATTTTTTCCCTATTCCTTAATTTTCGTGCTCATCCC
ATTTAACCTGTCCGAAAAATTCTCGCTTATTCGTTGAGAATGGAGAGTAT
GTTATTGTTGAAAGTAGGTTTTGAATTGTGGGCGTTTTTATCAATTCCAT
GGCAGACACTTTAGAAAAGTGACTTTGAGACGTCGGTTACCCTAAATCTT
AAGATGTAAAAAAAAGTTTCCTTTGTCAAGGAGAAATGCTAATTTTTATG
CAAACACGGGAAAATAGTAACGGTCGCATAGAACGCTGTTATCAACTGTG
CCATGCTTGATACGTTCTATTAATAAAGTATAGCTGTCCATTGTGGGCTC
GAAATTTTGCGCAAGAAAACCTTTTGAGTGACCCGAATATTAAATTGAAA
AGTGTAGTGACATGGTTTTCGGTTACCCAAAGTGTCCTAACTGATTCTAG
CACGCAAACATAACTTTTTTATGTTCATTTATTTTCAAAGAACTTTTTTC
GTCAAAACTATGACATCATAACCAGAAGAAAAAATTGAATGTCTTCATCA
CTATTTTCTTCATAGCCACTCTTACTTGTTATACATCATTTTAGTGATAA
ACTATCATTGTGTCCGTTCTCCCAGTAGACAAACCAATGTTAAAATATCT
GTTATGTAAGACAGGTTCCATTGTCCCTGTGGGAATTAATAAACAGTGTG
TAACAAAATGAGAATGTATCGTCACTTCTATGGTCGANATTGTCCCTGTG
GGAATTGATAAACAGTTTGTAAAAAAATGAGAATGTATCGTCACTTCTAT
GGTCGAATGTTTTCATTTTGTCATCATCGTACCCTCTTAATCCCTTCATT
TCATAACTTCATGCACATTTTTTTTCTGCTTCCAGATCTGGTTGTCTGAC
TGGTTAGCAGAAAACAACCCCAACAAACCAATCATCAGAGAACCAGGTGA
AATTACAGAACCTTCTTCAGATTGAGGCTTTCGCTGAAAAACTTTTATTT
TATTGTACATAACTGTTTGATTACTTTGGTGATTCGTGTAAATAAAAGAC
TGCTAAATTATGATCATTATTTGCTAATTCTAATTCTTCTCTGAAATATC
CATCTTGATATAATTCCATGTATTGACCATTAGGAATCAGGACTGCTTGT
GCTTAGATACAAATTGCGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000666XLOC_000666Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001243-exon-sc0000007-1575043694:1217466..1217810TCONS_00001243-exon-sc0000007-1575043694:1217466..1217810Clytia hemisphaericaexon
TCONS_00001243-exon-sc0000007-1575043694:1217028..1217125TCONS_00001243-exon-sc0000007-1575043694:1217028..1217125Clytia hemisphaericaexon
TCONS_00001243-exon-sc0000007-1575043694:1216807..1216914TCONS_00001243-exon-sc0000007-1575043694:1216807..1216914Clytia hemisphaericaexon
TCONS_00001243-exon-sc0000007-1575043694:1215726..1215826TCONS_00001243-exon-sc0000007-1575043694:1215726..1215826Clytia hemisphaericaexon
TCONS_00001243-exon-sc0000007-1575043694:1214947..1215065TCONS_00001243-exon-sc0000007-1575043694:1214947..1215065Clytia hemisphaericaexon
TCONS_00001243-exon-sc0000007-1575043694:1213442..1213725TCONS_00001243-exon-sc0000007-1575043694:1213442..1213725Clytia hemisphaericaexon
TCONS_00001243-exon-sc0000007-1510915933:1217466..1217810TCONS_00001243-exon-sc0000007-1510915933:1217466..1217810Clytia hemisphaericaexon
TCONS_00001243-exon-sc0000007-1510915933:1217028..1217125TCONS_00001243-exon-sc0000007-1510915933:1217028..1217125Clytia hemisphaericaexon
TCONS_00001243-exon-sc0000007-1510915933:1216807..1216914TCONS_00001243-exon-sc0000007-1510915933:1216807..1216914Clytia hemisphaericaexon
TCONS_00001243-exon-sc0000007-1510915933:1215726..1215826TCONS_00001243-exon-sc0000007-1510915933:1215726..1215826Clytia hemisphaericaexon
TCONS_00001243-exon-sc0000007-1510915933:1214947..1215065TCONS_00001243-exon-sc0000007-1510915933:1214947..1215065Clytia hemisphaericaexon
TCONS_00001243-exon-sc0000007-1510915933:1213442..1213725TCONS_00001243-exon-sc0000007-1510915933:1213442..1213725Clytia hemisphaericaexon
TCONS_00001243-exon-sc0000007-1491911889:1217466..1217810TCONS_00001243-exon-sc0000007-1491911889:1217466..1217810Clytia hemisphaericaexon
TCONS_00001243-exon-sc0000007-1491911889:1217028..1217125TCONS_00001243-exon-sc0000007-1491911889:1217028..1217125Clytia hemisphaericaexon
TCONS_00001243-exon-sc0000007-1491911889:1216807..1216914TCONS_00001243-exon-sc0000007-1491911889:1216807..1216914Clytia hemisphaericaexon
TCONS_00001243-exon-sc0000007-1491911889:1215726..1215826TCONS_00001243-exon-sc0000007-1491911889:1215726..1215826Clytia hemisphaericaexon
TCONS_00001243-exon-sc0000007-1491911889:1214947..1215065TCONS_00001243-exon-sc0000007-1491911889:1214947..1215065Clytia hemisphaericaexon
TCONS_00001243-exon-sc0000007-1491911889:1213442..1213725TCONS_00001243-exon-sc0000007-1491911889:1213442..1213725Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000007supercontigsc0000007:1213442..1217810 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
28.0545	29.6996	43.714	43.2698	29.9025	21.1538	21.7201	26.1802	12.2789	11.562	11.5533	11.6368	6.0393	4.77856	3.11775	5.40478	4.36087	6.17454	4.26523	4.22835	5.30863	4.70312	9.92739	10.8761	50.7878	70.4186	7.23914	10.1981	3.04707	2.86568
Blast
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BLAST of TCONS_00001243 vs. Swiss-Prot (Human)
Match: NDK5 (Nucleoside diphosphate kinase homolog 5 OS=Homo sapiens GN=NME5 PE=1 SV=1)

HSP 1 Score: 249.21 bits (635), Expect = 8.433e-81
Identity = 116/202 (57.43%), Postives = 150/202 (74.26%), Query Frame = 1 
Query:  244 IHVEQTLAIIKPDAIENASEIEERVLNEGFTILQTRRVHLTPEQTSEFYVEHYGKMFFPSLVAFMSSGDILAMILARKNGIKHWRSVIGPTQTSKARDEAPDSLRALYGTDNQRNAVHGSDSPDSALREIHFFFPNAILEPLPTSTEAKDYLTRDVNPTLLQGLTELCKRKPTDPLIWLSDWLAENNPNK------PIIREP 831
            I+VE+TLAIIKPD ++   EI++ +L  GFTI+Q R++ L+PEQ S FYVE YGKMFFP+L A+MSSG ++AMILAR   I +W  ++GP  +  A++  PDSLRA+YGTD+ RNA+HGS+   +A REI F FP  I+EP+P    AKDYL   + PTLL+GLTELCK+KP DPLIWL+DWL +NNPNK      PI+ EP
Sbjct:   10 IYVEKTLAIIKPDIVDKEEEIQDIILRSGFTIVQRRKLRLSPEQCSNFYVEKYGKMFFPNLTAYMSSGPLVAMILARHKAISYWLELLGPNNSLVAKETHPDSLRAIYGTDDLRNALHGSNDFAAAEREIRFMFPEVIVEPIPIGQAAKDYLNLHIMPTLLEGLTELCKQKPADPLIWLADWLLKNNPNKPKLCHHPIVEEP 211
The following BLAST results are available for this feature:
BLAST of TCONS_00001243 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
NDK58.433e-8157.43Nucleoside diphosphate kinase homolog 5 OS=Homo sa... [more]
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