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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00001239 ID=TCONS_00001239|Name=TCONS_00001239|organism=Clytia hemisphaerica|type=transcript|length=1479bp
GTAATATTGTTTCAGCTTTAATTTGCAGATCTTATCATTTTCGAGTTAGT
AAATGATAAATGATGATTGGACTAAACGGTGCTCACTTCCGCTCCAGTGG
GTATAAAATGACCTTCACCCTCACAATCAAGCATCACTAAACGGGAGCAA
TTCTGGAAAAATTGACGACAATAGAAAGGGTTTTCGAAGAAaggtttgtt
gttttttcattgcattttatAACATGTTACCcagatttgaaaatatattt
gaattcAAGTTTTGAGCATATATTATTTTTCACACTATCGTTTTCTTTTG
TTCTCGATTCAAAAATGTCTTAAATGTAATCTAAGCTTCTCTTAAAATTG
TTTAACAGGCATCCAAAATGAGGAAAATTCAACTGGTTCTGCAGCTGTTA
TCGATCATCTCAATGGCAAGCTTGGTCACGCCAGCACCTGTTGACAACGG
TGTCGTTAAACAAGTTGGAAAGAATGTGTACgcattcaaaaacattcaag
GACTCGTCCTCAATTCGATGTTCATCGTCACATCCAAAGGTGTAATCGTC
ATCGAACCTTTTAATTCGATACATGCAAGAAAATTGATCAAAGCCATCCG
AACGATCACTCCAAAGCCCATCAAATATCTTTTGATTTCACACAATCATT
GGGACCATGCCAGAGGTGGGAAGGTGTTTAGTGATGAAGGAGCGACAGTG
ATTGCTCATCAAGAAGCTGTTGATTGGATGGAGGAACACCCTTCCGACGA
TCTCTACCTTCCTGATCGAACGTGGAGGGGCAGAAAGCAGACTCTGTGTC
TTGGTGAAGCGAGAGTTGATCTCAACTATTACGGAATCAATCACGGGTAC
GGAATGACGGTCTTCGTCTACAAACCACCCAACGGTTCACCCAAAGACAA
CGTGGCTTACATCGCTGATCTGGTCACGCCTAACCGTGTCCTCTTCGCAT
CCATTCCTGATTCCAACATGCAAGAAGCAATTTCTACCTACCACAAGATT
GTTCAACTTCCATTCGACCGTGTAGTTTTCAGTCACGGCCCACTTCTCGA
TTCCCCACCAGACGGCACCATTCAAGATGTCCGCAACACGTTACAGTATT
CAGTTGATCTGGACGCAGCTGTCAAACAGGCTTTCAAGGATGGAAAGAAT
CTTATAGTGGATCCCGGACTGTTGGATTTACCACAGTATAAACATTTAGC
TTTTTACGAGAAAGATTTTACCAAGAATGTTGAGAAATTTGCATTCGAGC
TTTTCATTGGTCCTTATCCTTGGAGATCGGTGAGACGGTATTTGAAACCT
TCCAAAATTGCTTTTCCTCTACGAAGGGCGAAGAGAAGAAACAATCAGTG
ATTATCGTGTAAGCATCATCAATTATTTTGCAATTCTTAACCATCAACTA
TATATTTTTTGTAATCTAATATTTTACAATTCATtgttcaataatttgaa
aatctgaaaaaaatttcaaacaaaaataa Run BLAST on NCBI protein sequence of TCONS_00001239-protein >TCONS_00001239-protein ID=TCONS_00001239-protein|Name=TCONS_00001239-protein|organism=Clytia hemisphaerica|type=polypeptide|length=327bp
MRKIQLVLQLLSIISMASLVTPAPVDNGVVKQVGKNVYAFKNIQGLVLNS
MFIVTSKGVIVIEPFNSIHARKLIKAIRTITPKPIKYLLISHNHWDHARG
GKVFSDEGATVIAHQEAVDWMEEHPSDDLYLPDRTWRGRKQTLCLGEARV
DLNYYGINHGYGMTVFVYKPPNGSPKDNVAYIADLVTPNRVLFASIPDSN
MQEAISTYHKIVQLPFDRVVFSHGPLLDSPPDGTIQDVRNTLQYSVDLDA
AVKQAFKDGKNLIVDPGLLDLPQYKHLAFYEKDFTKNVEKFAFELFIGPY
PWRSVRRYLKPSKIAFPLRRAKRRNNQ Run BLAST on NCBI transcript from alignment at sc0000007:1178999..1181544- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00001239 ID=TCONS_00001239|Name=TCONS_00001239|organism=Clytia hemisphaerica|type=transcript|length=2546bp|location=Sequence derived from alignment at sc0000007:1178999..1181544- (Clytia hemisphaerica)
GTAATATTGTTTCAGCTTTAATTTGCAGATCTTATCATTTTCGAGTTAGT
AAATGATAAATGATGATTGGACTAAACGGTGCTCACTTCCGCTCCAGTGG
GTATAAAATGACCTTCACCCTCACAATCAAGCATCACTAAACGGGAGCAA
TTCTGGAAAAATTGACGACAATAGAAAGGGTTTTCGAAGAAAGGTTTGTT
GTTTTTTCATTGCATTTTATAACATGTTACCCAGATTTGAAAATATATTT
GAATTCAAGTTTTGAGCATATATTATTTTTCACACTATCGTTTTCTTTTG
TTCTCGATTCAAAAATGTCTTAAATGTAATCTAAGCTTCTCTTAAAATTG
TTTAACAGGCATCCAAAATGAGGAAAATTCAACTGGTTCTGCAGCTGTTA
TCGATCATCTCAATGGCAAGCTTGGTCACGCCAGCACCTGTTGACAACGG
TGTCGTTAAACAAGTTGGAAAGAATGTGTACGCATTCAAAAACATTCAAG
GACTCGTCCTCAATTCGATGTTCATCGTCACATCCAAAGGTGTAATCGTC
ATCGAACCTTTTAATTCGATACATGCAAGAAAATTGATCAAAGCCATCCG
AACGATCACTCCAAAGCCCATCAAATATCTTTTGATTTCACACAATCATT
GGGACCATGCCAGAGGTGGGAAGGTGTTTAGTGATGAAGGAGCGACAGTG
ATTGCTCATCAAGAAGCTGTTGATTGGATGGAGGAACACCCTTCCGACGA
TCTCTACCTTCCTGATCGAACGTGGAGGGGCAGAAAGCAGACTCTGTGTC
TTGGTGAGTATTCTATATACAATGAAACGTACCCGTATCTCGTATCAAAT
ATATTAAATGTAAAATTGCTCCTTTGAATGGGACTAACTCATTTATTAGT
TAATAACAACAAATAAAAACCACCGTTTCTAACAATACATATTTACTAAA
AACTAGGCGAGACTTATGGTATAAAGCCGACGAGATCCATCCCCTGTTTC
CACGAATAATATTGTACATGTGGGATTTTGACCGCAGAAGCAAATCGGTT
TTATTTTACTACTGTGGTTATTACCTTGAGTTAGACGTTTACCTTATATC
TAAAATGTTAACCTTTCTACCACGCTGTTTTGTATATTTTCACGCTGTCC
CCACGCAACATTTTTTGACAAAATGGACATGTTTGGTTATTTTGTCATAA
CTCAAGAACTAGAAATCTTTTGATAAAAAATTTGCTATCCCTGAAAAACT
AATTAAATTCTGCAGCTTTTAGGTTGGGTACCAATCAAAATAAAATACTC
TAACTAAAATGGTAGCTCAACATTTACCAAAGTTTTTTTCCTCATTTTTC
GGTAATGTCACTTTTTTGGTATTTTTCACTTCCTATGCAAAAAAAAGTGG
GGGAAGTTTAATTATTAAATCTTTCTTTAGTATTTAATCATTATATATTT
ACTCCTAAAGCCATATACCAAAAATTAGCATACAAAAATCATTCTACTGC
TCACAATGGCTTTCCAAACATCAGTCACTTTTCTCAGAAATCAGTGTTTT
TCCGTCCGCCATTTTGAATCAGTGTTTTTCTTCGAAAAGTGTTGACTCAC
TACGTGATCATAACATTACATCACTATATATCAACGGAAAGCTTAGACTC
TACACTTTCTTTTTCTTTTTTTTTGAACGATTACGAAGCAAGCCAATAAA
ATATATGGCTTGAGAAAGACGTGTTTATCAAATTGCGTAAATGTAAGGCA
TTCGGAACGTATCAAAGACGTATATGTACGGCATTCGGGTTGGAAAGGTT
AAAGCATATTTAATTTTCAACGATTGTAGTTAAATTTTGAGTATTCATGA
TTGCACTTAATTTGTTTTAGGTGAAGCGAGAGTTGATCTCAACTATTACG
GAATCAATCACGGGTACGGAATGACGGTCTTCGTCTACAAACCACCCAAC
GGTTCACCCAAAGACAACGTGGCTTACATCGCTGATCTGGTCACGCCTAA
CCGTGTCCTCTTCGCATCCATTCCTGATTCCAACATGCAAGAAGCAATTT
CTACCTACCACAAGATTGTTCAACTTCCATTCGACCGTGTAGTTTTCAGT
CACGGCCCACTTCTCGATTCCCCACCAGACGGCACCATTCAAGATGTCCG
CAACACGTTACAGTATTCAGTTGATCTGGACGCAGCTGTCAAACAGGCTT
TCAAGGATGGAAAGAATCTTATAGTGGATCCCGGACTGTTGGATTTACCA
CAGTATAAACATTTAGCTTTTTACGAGAAAGATTTTACCAAGAATGTTGA
GAAATTTGCATTCGAGCTTTTCATTGGTCCTTATCCTTGGAGATCGGTGA
GACGGTATTTGAAACCTTCCAAAATTGCTTTTCCTCTACGAAGGGCGAAG
AGAAGAAACAATCAGTGATTATCGTGTAAGCATCATCAATTATTTTGCAA
TTCTTAACCATCAACTATATATTTTTTGTAATCTAATATTTTACAATTCA
TTGTTCAATAATTTGAAAATCTGAAAAAAATTTCAAACAAAAATAA Coding sequence (CDS) from alignment at sc0000007:1178999..1181544- >TCONS_00001239 ID=TCONS_00001239|Name=TCONS_00001239|organism=Clytia hemisphaerica|type=CDS|length=1968bp|location=Sequence derived from alignment at sc0000007:1178999..1181544- (Clytia hemisphaerica)
GTGAAGCGAGAGTTGATCTCAACTATTACGGAATCAATCACGGGTACGGA
ATGACGGTCTTCGTCTACAAACCACCCAACGGTTCACCCAAAGACAACGT
GGCTTACATCGCTGATCTGGTCACGCCTAACCGTGTCCTCTTCGCATCCA
TTCCTGATTCCAACATGCAAGAAGCAATTTCTACCTACCACAAGATTGTT
CAACTTCCATTCGACCGTGTAGTTTTCAGTCACGGCCCACTTCTCGATTC
CCCACCAGACGGCACCATTCAAGATGTCCGCAACACGTTACAGTATTCAG
TTGATCTGGACGCAGCTGTCAAACAGGCTTTCAAGGATGGAAAGAATCTT
ATAGTGGATCCCGGACTGTTGGATTTACCACAGTATAAACATTTAGCTTT
TTACGAGAAAGATTTTACCAAGAATGTTGAGAAATTTGCATTCGAGCTTT
TCATTGGTCCTTATCCTTGGAGATCGGTGAGACGGTATTTGAAACCTTCC
AAAATTGCTTTTCCTCTACGAAGGGCGAAGAGAAGAAACAATCAGTGAAT
GAGGAAAATTCAACTGGTTCTGCAGCTGTTATCGATCATCTCAATGGCAA
GCTTGGTCACGCCAGCACCTGTTGACAACGGTGTCGTTAAACAAGTTGGA
AAGAATGTGTACGCATTCAAAAACATTCAAGGACTCGTCCTCAATTCGAT
GTTCATCGTCACATCCAAAGGTGTAATCGTCATCGAACCTTTTAATTCGA
TACATGCAAGAAAATTGATCAAAGCCATCCGAACGATCACTCCAAAGCCC
ATCAAATATCTTTTGATTTCACACAATCATTGGGACCATGCCAGAGGTGG
GAAGGTGTTTAGTGATGAAGGAGCGACAGTGATTGCTCATCAAGAAGCTG
TTGATTGGATGGAGGAACACCCTTCCGACGATCTCTACCTTCCTGATCGA
ACGTGGAGGGGCAGAAAGCAGACTCTGTGTCTTGGTGAAGCGAGAGTTGA
TCTCAACTATTACGGAATCAATCACGGGTACGGAATGACGGTCTTCGTCT
ACAAACCACCCAACGGTTCACCCAAAGACAACGTGGCTTACATCGCTGAT
CTGGTCACGCCTAACCGTGTCCTCTTCGCATCCATTCCTGATTCCAACAT
GCAAGAAGCAATTTCTACCTACCACAAGATTGTTCAACTTCCATTCGACC
GTGTAGTTTTCAGTCACGGCCCACTTCTCGATTCCCCACCAGACGGCACC
ATTCAAGATGTCCGCAACACGTTACAGTATTCAGTTGATCTGGACGCAGC
TGTCAAACAGGCTTTCAAGGATGGAAAGAATCTTATAGTGGATCCCGGAC
TGTTGGATTTACCACAGTATAAACATTTAGCTTTTTACGAGAAAGATTTT
ACCAAGAATGTTGAGAAATTTGCATTCGAGCTTTTCATTGGTCCTTATCC
TTGGAGATCGGTGAGACGGTATTTGAAACCTTCCAAAATTGCTTTTCCTC
TACGAAGGGCGAAGAGAAGAAACAATCAGTGAATGAGGAAAATTCAACTG
GTTCTGCAGCTGTTATCGATCATCTCAATGGCAAGCTTGGTCACGCCAGC
ACCTGTTGACAACGGTGTCGTTAAACAAGTTGGAAAGAATGTGTACGCAT
TCAAAAACATTCAAGGACTCGTCCTCAATTCGATGTTCATCGTCACATCC
AAAGGTGTAATCGTCATCGAACCTTTTAATTCGATACATGCAAGAAAATT
GATCAAAGCCATCCGAACGATCACTCCAAAGCCCATCAAATATCTTTTGA
TTTCACACAATCATTGGGACCATGCCAGAGGTGGGAAGGTGTTTAGTGAT
GAAGGAGCGACAGTGATTGCTCATCAAGAAGCTGTTGATTGGATGGAGGA
ACACCCTTCCGACGATCTCTACCTTCCTGATCGAACGTGGAGGGGCAGAA
AGCAGACTCTGTGTCTTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00001239-exon-sc0000007-1575043694:1180742..1181544 | TCONS_00001239-exon-sc0000007-1575043694:1180742..1181544 | Clytia hemisphaerica | exon |
| TCONS_00001239-exon-sc0000007-1575043694:1178999..1179674 | TCONS_00001239-exon-sc0000007-1575043694:1178999..1179674 | Clytia hemisphaerica | exon |
| TCONS_00001239-exon-sc0000007-1510915933:1180742..1181544 | TCONS_00001239-exon-sc0000007-1510915933:1180742..1181544 | Clytia hemisphaerica | exon |
| TCONS_00001239-exon-sc0000007-1510915933:1178999..1179674 | TCONS_00001239-exon-sc0000007-1510915933:1178999..1179674 | Clytia hemisphaerica | exon |
| TCONS_00001239-exon-sc0000007-1491911889:1180742..1181544 | TCONS_00001239-exon-sc0000007-1491911889:1180742..1181544 | Clytia hemisphaerica | exon |
| TCONS_00001239-exon-sc0000007-1491911889:1178999..1179674 | TCONS_00001239-exon-sc0000007-1491911889:1178999..1179674 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| sc0000007 | supercontig | sc0000007:1178999..1181544 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
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| IPR001279 | Metallo-B-lactamas |
Blast
The following BLAST results are available for this feature:
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