TCONS_00001238 (transcript) - C. hemisphaerica

Overview
NameTCONS_00001238
Unique NameTCONS_00001238
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1361

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00001238 ID=TCONS_00001238|Name=TCONS_00001238|organism=Clytia hemisphaerica|type=transcript|length=1361bp
CACGATTGAACCGAAAGAGAATGGAAGAAAAGTGTCAATGAATGTCTTTA
GCCTAAAGAGCTTATAAAATAGTTACAAGTTGAAATAAACATAGGCGTGC
GTGattaacaaataaaataaagcAGCATCCCGCTTGAGTTAACTCCTCAA
CCCAAACgtagaaaattatcaaaatctaaTTTACAACAAGTACAAGAATc
tataaaaatatatcaaaatatttgaattttatataaaaatcatTATGATT
GTAAACCTAAAATGtccaaaataattaattttataatttatgtACTGGTA
TATAAAATCTAATTGCAATAAATTCAAACTACACAAATaatcgaaacaaa
aaattaaatactgAAATTGAGCATTAATTGTCAATCATGGTAAACTTGAA
ATACTTTAAAAGTAAAGGCTATCGGAATGTTTAAAAGCTAGATGTAGTAG
ACAATCATAAATACAATCTAGACCGTAGCATCTCTTTTTTAAATGTTAAC
TTACTGACCCTGGACTCCATCTCTCAATGTTGGAAGAAAATGTTGTTTTA
TCCTACATGGTCATTTTTGACATTGAGATGTCTTATGCGAGCCCGGGGAG
GGCACTggccttgacggccgacggggacgtgccgcttgAGTTTAAAAAGT
TGACCCTGTCAGGtatgaatttttggtaaaGTACATAAAGTTCAATAAAA
AGACATTAAAATGAAAACCGATCACAATTACAGGTGTAATAAATTTCAAA
GCAACGCCATATGATGGCAATAAACATGGTCAAAAACACCACCTGTGTAT
AATGATCCTTCTTTGGCACTTCATCTGAGCTCAGTGCATAAATGTCATGA
CCCAAATGATCCTTTGACAACTGCAAACTATATTTCTTCATGTTAATGCT
TGATTTTCTTTCAAAGTTTGTACGGATGGCTTTTGCTCTGAGCTCTAATT
CGTCAGCTTCTAGGGAGAAGCCATGACTTTTCTTGACGACAGCAAGCTGT
TCATAACATCGTGCAACCTTTTCATGCTCCCCAAGTGCATTTTCAGCAAC
ATTTTTAGCATGgtctaacttttgaaaacctttctcgatttggccatttt
tgaTGTACATTTTCCCAAGGGTTGACAGCACCTTCATAGTTTCAACTCCA
TCTCCATACAGTTTGTGGTAAATACCATAAGCCACTCGTGCACACTTGAT
AGCGCTCCCATAATCAGCCACCTTACCGCAAGCATGACTTTGGTAGTGTA
GAGCTCTTGCACAATGTGTGTGGACACCAAAATGCTTTTGATAGCCAATC
AATTGAGTTTTCCGCACTTCGATGCTTTTATGGAAATCTTTCGTACTGTA
ATGAAACGCTA
Run BLAST on NCBI

transcript from alignment at sc0000007:1164754..1166357-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00001238 ID=TCONS_00001238|Name=TCONS_00001238|organism=Clytia hemisphaerica|type=transcript|length=1604bp|location=Sequence derived from alignment at sc0000007:1164754..1166357- (Clytia hemisphaerica)
CACGATTGAACCGAAAGAGAATGGAAGAAAAGTGTCAATGAATGTCTTTA GCCTAAAGAGCTTATAAAATAGTTACAAGTTGAAATAAACATAGGCGTGC GTGATTAACAAATAAAATAAAGCAGCATCCCGCTTGAGTTAACTCCTCAA CCCAAACGTAGAAAATTATCAAAATCTAATTTACAACAAGTACAAGAATC TATAAAAATATATCAAAATATTTGAATTTTATATAAAAATCATTATGATT GTAAACCTAAAATGTCCAAAATAATTAATTTTATAATTTATGTACTGGTA TATAAAATCTAATTGCAATAAATTCAAACTACACAAATAATCGAAACAAA AAATTAAATACTGAAATTGAGCATTAATTGTCAATCATGGTAAACTTGAA ATACTTTAAAAGTAAAGGCTATCGGAATGTTTAAAAGCTAGATGTAGTAG ACAATCATAAATACAATCTAGACCGTAGCATCTCTTTTTTAAATGTTAAC TTACTGACCCTGGACTCCATCTCTCAATGTTGGAAGAAAATGTTGTTTTA TCCTACATGGTCATTTTTGACATTGAGATGTCTTATGCGAGCCCGGGGAG GGCACTGGCCTTGACGGCCGACGGGGACGTGCCGCTTGAGTTTAAAAAGT TGACCCTGTCAGGTATGAATTTTTGGTAAAATGGTGACCTTGTCAGAACG AAAAATTGAAAGTTTTTCCAATCTCCACCCTAACAAGTGGCAAAAATGAC GTAGACGTAGAAAAGTAGACGAAAAATTGTAAAATTTCAGATACACATAT TGAAATTTAGTAGATTTGGGACCCTGTCAGATATCTTCAGAGCCTAAAAA AGGGACCCTGACCAGCGACACGTCCCGTACCCAATTTTGCCTAAGTGCCC CATCCCCGGGTATGCAAGTACACGTACATAAAGTTCAATAAAAAGACATT AAAATGAAAACCGATCACAATTACAGGTGTAATAAATTTCAAAGCAACGC CATATGATGGCAATAAACATGGTCAAAAACACCACCTGTGTATAATGATC CTTCTTTGGCACTTCATCTGAGCTCAGTGCATAAATGTCATGACCCAAAT GATCCTTTGACAACTGCAAACTATATTTCTTCATGTTAATGCTTGATTTT CTTTCAAAGTTTGTACGGATGGCTTTTGCTCTGAGCTCTAATTCGTCAGC TTCTAGGGAGAAGCCATGACTTTTCTTGACGACAGCAAGCTGTTCATAAC ATCGTGCAACCTTTTCATGCTCCCCAAGTGCATTTTCAGCAACATTTTTA GCATGGTCTAACTTTTGAAAACCTTTCTCGATTTGGCCATTTTTGATGTA CATTTTCCCAAGGGTTGACAGCACCTTCATAGTTTCAACTCCATCTCCAT ACAGTTTGTGGTAAATACCATAAGCCACTCGTGCACACTTGATAGCGCTC CCATAATCAGCCACCTTACCGCAAGCATGACTTTGGTAGTGTAGAGCTCT TGCACAATGTGTGTGGACACCAAAATGCTTTTGATAGCCAATCAATTGAG TTTTCCGCACTTCGATGCTTTTATGGAAATCTTTCGTACTGTAATGAAAC GCTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000662XLOC_000662Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001238-exon-sc0000007-1575043694:1165678..1166357TCONS_00001238-exon-sc0000007-1575043694:1165678..1166357Clytia hemisphaericaexon
TCONS_00001238-exon-sc0000007-1575043694:1164754..1165434TCONS_00001238-exon-sc0000007-1575043694:1164754..1165434Clytia hemisphaericaexon
TCONS_00001238-exon-sc0000007-1510915933:1165678..1166357TCONS_00001238-exon-sc0000007-1510915933:1165678..1166357Clytia hemisphaericaexon
TCONS_00001238-exon-sc0000007-1510915933:1164754..1165434TCONS_00001238-exon-sc0000007-1510915933:1164754..1165434Clytia hemisphaericaexon
TCONS_00001238-exon-sc0000007-1491911889:1165678..1166357TCONS_00001238-exon-sc0000007-1491911889:1165678..1166357Clytia hemisphaericaexon
TCONS_00001238-exon-sc0000007-1491911889:1164754..1165434TCONS_00001238-exon-sc0000007-1491911889:1164754..1165434Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000007supercontigsc0000007:1164754..1166357 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.22623 0 0 0 0 0 0 0 0 0 0.384427 0.311531 0 0 0 0 0 0 0 9.08885e-08 0 0 0 0 0 0 0 0 0 0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR011990TPR-like_helical_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00001238 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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