|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00001238 ID=TCONS_00001238|Name=TCONS_00001238|organism=Clytia hemisphaerica|type=transcript|length=1361bp
CACGATTGAACCGAAAGAGAATGGAAGAAAAGTGTCAATGAATGTCTTTA
GCCTAAAGAGCTTATAAAATAGTTACAAGTTGAAATAAACATAGGCGTGC
GTGattaacaaataaaataaagcAGCATCCCGCTTGAGTTAACTCCTCAA
CCCAAACgtagaaaattatcaaaatctaaTTTACAACAAGTACAAGAATc
tataaaaatatatcaaaatatttgaattttatataaaaatcatTATGATT
GTAAACCTAAAATGtccaaaataattaattttataatttatgtACTGGTA
TATAAAATCTAATTGCAATAAATTCAAACTACACAAATaatcgaaacaaa
aaattaaatactgAAATTGAGCATTAATTGTCAATCATGGTAAACTTGAA
ATACTTTAAAAGTAAAGGCTATCGGAATGTTTAAAAGCTAGATGTAGTAG
ACAATCATAAATACAATCTAGACCGTAGCATCTCTTTTTTAAATGTTAAC
TTACTGACCCTGGACTCCATCTCTCAATGTTGGAAGAAAATGTTGTTTTA
TCCTACATGGTCATTTTTGACATTGAGATGTCTTATGCGAGCCCGGGGAG
GGCACTggccttgacggccgacggggacgtgccgcttgAGTTTAAAAAGT
TGACCCTGTCAGGtatgaatttttggtaaaGTACATAAAGTTCAATAAAA
AGACATTAAAATGAAAACCGATCACAATTACAGGTGTAATAAATTTCAAA
GCAACGCCATATGATGGCAATAAACATGGTCAAAAACACCACCTGTGTAT
AATGATCCTTCTTTGGCACTTCATCTGAGCTCAGTGCATAAATGTCATGA
CCCAAATGATCCTTTGACAACTGCAAACTATATTTCTTCATGTTAATGCT
TGATTTTCTTTCAAAGTTTGTACGGATGGCTTTTGCTCTGAGCTCTAATT
CGTCAGCTTCTAGGGAGAAGCCATGACTTTTCTTGACGACAGCAAGCTGT
TCATAACATCGTGCAACCTTTTCATGCTCCCCAAGTGCATTTTCAGCAAC
ATTTTTAGCATGgtctaacttttgaaaacctttctcgatttggccatttt
tgaTGTACATTTTCCCAAGGGTTGACAGCACCTTCATAGTTTCAACTCCA
TCTCCATACAGTTTGTGGTAAATACCATAAGCCACTCGTGCACACTTGAT
AGCGCTCCCATAATCAGCCACCTTACCGCAAGCATGACTTTGGTAGTGTA
GAGCTCTTGCACAATGTGTGTGGACACCAAAATGCTTTTGATAGCCAATC
AATTGAGTTTTCCGCACTTCGATGCTTTTATGGAAATCTTTCGTACTGTA
ATGAAACGCTA Run BLAST on NCBI transcript from alignment at sc0000007:1164754..1166357- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00001238 ID=TCONS_00001238|Name=TCONS_00001238|organism=Clytia hemisphaerica|type=transcript|length=1604bp|location=Sequence derived from alignment at sc0000007:1164754..1166357- (Clytia hemisphaerica)
CACGATTGAACCGAAAGAGAATGGAAGAAAAGTGTCAATGAATGTCTTTA
GCCTAAAGAGCTTATAAAATAGTTACAAGTTGAAATAAACATAGGCGTGC
GTGATTAACAAATAAAATAAAGCAGCATCCCGCTTGAGTTAACTCCTCAA
CCCAAACGTAGAAAATTATCAAAATCTAATTTACAACAAGTACAAGAATC
TATAAAAATATATCAAAATATTTGAATTTTATATAAAAATCATTATGATT
GTAAACCTAAAATGTCCAAAATAATTAATTTTATAATTTATGTACTGGTA
TATAAAATCTAATTGCAATAAATTCAAACTACACAAATAATCGAAACAAA
AAATTAAATACTGAAATTGAGCATTAATTGTCAATCATGGTAAACTTGAA
ATACTTTAAAAGTAAAGGCTATCGGAATGTTTAAAAGCTAGATGTAGTAG
ACAATCATAAATACAATCTAGACCGTAGCATCTCTTTTTTAAATGTTAAC
TTACTGACCCTGGACTCCATCTCTCAATGTTGGAAGAAAATGTTGTTTTA
TCCTACATGGTCATTTTTGACATTGAGATGTCTTATGCGAGCCCGGGGAG
GGCACTGGCCTTGACGGCCGACGGGGACGTGCCGCTTGAGTTTAAAAAGT
TGACCCTGTCAGGTATGAATTTTTGGTAAAATGGTGACCTTGTCAGAACG
AAAAATTGAAAGTTTTTCCAATCTCCACCCTAACAAGTGGCAAAAATGAC
GTAGACGTAGAAAAGTAGACGAAAAATTGTAAAATTTCAGATACACATAT
TGAAATTTAGTAGATTTGGGACCCTGTCAGATATCTTCAGAGCCTAAAAA
AGGGACCCTGACCAGCGACACGTCCCGTACCCAATTTTGCCTAAGTGCCC
CATCCCCGGGTATGCAAGTACACGTACATAAAGTTCAATAAAAAGACATT
AAAATGAAAACCGATCACAATTACAGGTGTAATAAATTTCAAAGCAACGC
CATATGATGGCAATAAACATGGTCAAAAACACCACCTGTGTATAATGATC
CTTCTTTGGCACTTCATCTGAGCTCAGTGCATAAATGTCATGACCCAAAT
GATCCTTTGACAACTGCAAACTATATTTCTTCATGTTAATGCTTGATTTT
CTTTCAAAGTTTGTACGGATGGCTTTTGCTCTGAGCTCTAATTCGTCAGC
TTCTAGGGAGAAGCCATGACTTTTCTTGACGACAGCAAGCTGTTCATAAC
ATCGTGCAACCTTTTCATGCTCCCCAAGTGCATTTTCAGCAACATTTTTA
GCATGGTCTAACTTTTGAAAACCTTTCTCGATTTGGCCATTTTTGATGTA
CATTTTCCCAAGGGTTGACAGCACCTTCATAGTTTCAACTCCATCTCCAT
ACAGTTTGTGGTAAATACCATAAGCCACTCGTGCACACTTGATAGCGCTC
CCATAATCAGCCACCTTACCGCAAGCATGACTTTGGTAGTGTAGAGCTCT
TGCACAATGTGTGTGGACACCAAAATGCTTTTGATAGCCAATCAATTGAG
TTTTCCGCACTTCGATGCTTTTATGGAAATCTTTCGTACTGTAATGAAAC
GCTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00001238-exon-sc0000007-1575043694:1165678..1166357 | TCONS_00001238-exon-sc0000007-1575043694:1165678..1166357 | Clytia hemisphaerica | exon |
| TCONS_00001238-exon-sc0000007-1575043694:1164754..1165434 | TCONS_00001238-exon-sc0000007-1575043694:1164754..1165434 | Clytia hemisphaerica | exon |
| TCONS_00001238-exon-sc0000007-1510915933:1165678..1166357 | TCONS_00001238-exon-sc0000007-1510915933:1165678..1166357 | Clytia hemisphaerica | exon |
| TCONS_00001238-exon-sc0000007-1510915933:1164754..1165434 | TCONS_00001238-exon-sc0000007-1510915933:1164754..1165434 | Clytia hemisphaerica | exon |
| TCONS_00001238-exon-sc0000007-1491911889:1165678..1166357 | TCONS_00001238-exon-sc0000007-1491911889:1165678..1166357 | Clytia hemisphaerica | exon |
| TCONS_00001238-exon-sc0000007-1491911889:1164754..1165434 | TCONS_00001238-exon-sc0000007-1491911889:1164754..1165434 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000007 | supercontig | sc0000007:1164754..1166357 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR011990 | TPR-like_helical_dom |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005515 | protein binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0005515 |
protein binding |
Blast
The following BLAST results are available for this feature:
|
