TCONS_00001236 (transcript) - C. hemisphaerica

Overview
NameTCONS_00001236
Unique NameTCONS_00001236
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2502

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00001236 ID=TCONS_00001236|Name=TCONS_00001236|organism=Clytia hemisphaerica|type=transcript|length=2502bp
gcaaaaaaagtttttgcagCCGACCGggtgtttatttttttcgtccagaa
acaaaaatattttaagggtCAGCCTAAAAGAGAGAAGTGATGTTCCCATA
CATTCTGATTATACTAAATTTACTAATTGTATCACGCTGTCCAAGCAGCT
GATTCTTTTAtcatttgtatttattttatttagacataaaaaataaaaaa
caatatgCAGCTTAAACACTTAAAAACTACACTGGCTCCCCAGGATGGAG
CTGCTAAGATCACAGCAATGGCATGGGCTCCTAACAATACCAAAATGGCA
ATAGTATCAACTGATCGtgtagttgttctttttgatgAACATGGAGAAAA
AAGGGACAAATTTGGAACAAAACCTGGTGATGCTAAAACTGGGAAGAAAG
GTTACCAAGTGAAAGGACTAGCATTTTCTCCTGATTCCACCAAGATAGCT
GTTGGACAAACAGATAACATTGTTTTTGTATACAAGATTGGTGACGAATG
gGGCGAAAGAAAAGTTATATGCAACAAGTTTCTCCAACAGAGTGCTGTTA
CATGTTTGGTTTGGCCCCCAGAAAATCAATATATTATTTTTGGTCTTGCT
GATGGAAAGgTCAGGATGGCAAGTctaaaaaccaacaaatcacaAACTGT
CTATGGAACTGGTATCCATTGTATATCTTTGTGTGTCAGTCCTGATGGGA
AAGGTGTTTTGTCAGGGCATGCAGATGGAGCCATTGTCAGATATATGTTT
GAAGATACTGGGACAGGTTTGACCCAGGGGCAAGTTGTGAAACATGGCTG
TCCACCGTATGCCTTGTGTTGGGGCTCATCAATCATTGCAGCAGGATGTG
ATAAAAGAATTGTTGCATATGGAAAAGAAGGGCGGGTATTACAAAACTTC
GACTATTCAAAAGATGATGAGGAAAAAGAGTTCACAGTTGCAATAGCAAG
TCCAAGTGGTCAGTCAGTGGTGGTTGGAAGTTATGATAGATTACGTGTTT
TCAATTGGAGTCCCCGAAGAGGAGCCTGGGAAGAATCTAAACCAAAAGAG
ATCAATAATTTATACACCATCAGCTCACTTTCTTGGAAAAGAGATGGTTC
AAGGCTTTGTGCTGGCACACTCTGTGGTGGAGTTGAACTGTTTGATTGCT
GTTTGAGAAGATCTATTTTCAAGAATAAATTTGAAATGACTTATGTTGGG
TTGAGCCAGGTTATTGTCAAAAATTTGGCATCAGGAGCCAGAGTTGTTTT
AAAATCACATTATGGATACGAGATTGATGAAGTGAAAATAATGGGGAAGG
ACAGATTTCTTGTTGGACACACTTCAGAAACATTGCTTGTGGGAGATCTA
AACGAAAACAAGCTTAGTGAGCTTCCATGGCATAATTCAGGTGGAAATGA
GAAGttcttctttgaaaatgaaacaGTTTGTATGGTATTCAATGCAGGAG
AATTATCTTTGATCGAGTATGGTCAAAATGAAGTGTTAGCTACAGTCAGA
ACAGAATTCATGAACCCTCATCTTATAAGCGTACGTTTGAATGAAAGAAA
GCTGAAAGATCAAGAAGACAATAAAAAATTGGGTTATTTGATTGACCTGA
AAACTATATGTGTCAtgGACTTGATGTCAGGGATGGTTGTAGCCAATATT
TCACATGATgtcaaaattgactggttagaGATGAATGAGACTGGAAAGAA
GCTCTTATTCCGAGACAAAAAACTGAGGTTATTATTGGCAGATATTCAAA
GTGAAACAAAAACCACTATTTCTACATATTGCTCTTATGTGCAATGGGTG
CCTTTGAGTGATGTTGTGGTAGCTCAAAGCAGAAGCGATCTTTGTGTTTG
GTACAATATTGAATCACCTGAACGAGTGACTATCGTTCCCATCAAAGGTG
ACATCACAGACCTTGAGAAGATCGAGGGTAAAACAAACGTGATCGTACAA
GAAGGTGTACAATCGATCAATTACACATTAGACGAAGGGCTAATCGAGTT
TGGAACTGCTATGGAAGATGGTGATTATGCTAGGGCTGTTTCGTTTCTGG
AAGGATTGGAGATGTCACCTGAAACAGAAGCTATGTGGAAGACTCTCAGC
AAGGTTGCCATGGAGAATAAAGAGCTTTTCATCGCCGAAAGGTGTTTTGC
TGCACTAGGAGATGTTTCTAAAGCTCGCTATTTACGTGGAATCAACGACT
TGATCGATGAACTGAACCCAAGTTATGGAGATCCTATGTATCATCCGACT
ATTCGCGCCAAACTGGCCATTTTTGAGAAACAATTCAAACTTGCAGAAAG
TATTTACTTGGAACAAGGACAAGTTGATGAAGCGATGGAGATGTACCAAG
AAGTTCACAAGTGGGATGAATCTTTGGCCATCGCCGAAGCCAAAAGACAT
CCAGAACTAGAGAACCTTAGAAGCTATTACTTGCAATATTTGATGAAGTC
AGGCCAAGAAGAAAAAGCTGGAGAGGTTAAAACCTTGAATTTAGTTAACA
GA
Run BLAST on NCBI

transcript from alignment at sc0000007:1136849..1147793-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00001236 ID=TCONS_00001236|Name=TCONS_00001236|organism=Clytia hemisphaerica|type=transcript|length=10945bp|location=Sequence derived from alignment at sc0000007:1136849..1147793- (Clytia hemisphaerica)
GCAAAAAAAGTTTTTGCAGCCGACCGGGTGTTTATTTTTTTCGTCCAGAA ACAAAAATATTTTAAGGGTCAGCCTAAAAGAGAGAAGTGATGTTCCCATA CATTCTGATTATACTAAATTTACTAATTGTATCACGCTGTCCAAGCAGCT GATTCTTTTATCATTTGTATTTATTTTATTTAGACATAAAAAATAAAAAA CAATATGCAGCTTAAACACTTAAAAACTACACTGGCTCCCCAGGTATGAA AACTTTCTTTTTTACAGTGTTGTAACTTTTCTCTTCATATAAAAAACTAT TTAGGAATGAAATATTAAAGAACTCAAAATATAACCATTGCTGAACTTTA TCTTTTTCATTTCACCCAGAGGCAAGACTGTTTAATCCTTTCTAGTATGA TTTATTGTTATACCTTTAAATTGTAATTTTTATGAAGGATGGAGCTGCTA AGATCACAGCAATGGCATGGGCTCCTAACAATACCAAAATGGCAATAGTA TCAACTGATCGTGTAGTTGTTCTTTTTGATGAACATGGAGAAAAAAGGGA CAAATTTGGAACAAAACCTGGTGATGCTAAAGTAAGCTCTATCTAAGTCA AAAAATCCCTTTGTGATAGAACAAATAAAAGTTATCACATGATATCGATT ACAATATGGGATGTATTATATTAAGTTAAACTTTTTCCTCATATTTTTGA GCCCGTATGCCAGGAAACTATCAAAAACTTTGAACAAGAAAAATATATCC AATATTGTGCGAGTAAGTTTGATAATTGGTTTAGCATTAACTTGAAAAAT ACGACCAAACTTTTCTCTCTCCATTTGTGTCTTTTTCTATGTTTTTTTTT CTCTTCATGCATTTTGTTCTTCCTCTATTTTGATGAAATTAACACCAAAA CATTTATAAAAAATCCAAAGGTCATTAAAATGTTAAAAACATTCTTTTGT ATAACTCTTCGGATGATTTGCTGCTCTATCAGCCAATCAGATTGCTCATA TTTTTCATGTTGATGAAAAGATTAAATTATTTTAGTAGTCACATAAGCAT AAGCCTTGGATGAAATAATGAATCTTCTTCATTTATTGATTTCAAATCTT TCTTACTATCCACACCAAAGTTACCTTTCTAAATGATTGTTCTTTTAGAC TGGGAAGAAAGGTTACCAAGTGAAAGGACTAGCATTTTCTCCTGATTCCA CCAAGATAGCTGTTGGACAAACAGATAACATTGTTTTTGTATACAAGATT GGTGACGAATGGTAAGACTAAGAACATTGATCTTTCTAAAAACTGAAACA TCTACAGTCAGATATTATTTACTTATATTTGAAGATCGAACATAATATGA AAATGTTATTTATATATATTAATTAATTTTTGATTTTATTTTAGGGGCGA AAGAAAAGTTATATGCAACAAGTTTCTCCAACAGGTAAAGTATCTTTTTA AATTGATTATTATTTCATCACAAGAGAAATTTTTTTAACATTTGATACCA TAGTATTGTATTATCCTATACTGTGTTAAATGAATGATTTTACTTTACAC ATCTGCTATAATAATATAATTTAATGAGGATCAATTTTTACATTAGAGTG CTGTTACATGTTTGGTTTGGCCCCCAGAAAATCAATATATTATTTTTGGT CTTGCTGATGGAAAGGTTTGTGACTTTTGACATTTTGACTTTTATGATGG ATGATATCTCTTTTGGGATTCAAATTTTATAAATTGATAAAGTAAAATAG TTGTCTGTTTGACCATACCTCCTAAATCTATAGGGCTGACAAAATGAATG GCAAAAAAAGTGTTTTTAAAACCAGCCTAATGTCACCCCATAAGTGACCA TTTCTTAGCTGAACAGTTAATTTATTTTTTTGAAAACAAATAATTAATTT TACTATACTCATGAATTTTAAAAATCAAAAGGTGATCCTAAAAGTCTCAG CTTTCAAAGATGGTTACATTTAAGAGATGGTATTGGTAGGAAAGGGAGAT CTACTTTTTAACCTGGAAATATATATTGACGATATAAAGCATACAAACAC CTAAAATTTTAGATCACACTTCAAATGATTGAGTTTGAGAATGATTATTT TCTTCATCTTTCTGTAATGTTTTAAAATTTCCATTTTTTTTTAGGTCAGG ATGGCAAGTCTAAAAACCAACAAATCACAAACTGTCTATGGAACTGGTAT CCATTGTATATCTTTGTGTGTCAGGTTGGCATTCTGTTTTAATTACATAA ATGATTTTCAAACTATAAAATGAAAGCAATATTACTATTATGTTAAGTCT TTGAAGCTTGTAAATGAAGACATAATTGAGTACAGCTTTCAAGAAACTAC TTTAACAATTCATATTTAAGCATTTTCACAACAGATAATAAACTAAAAAT TTTTTTGAAAAAGTTTCATTTAATATAAACATTTTCTTGACTGGACAAAT CCAATAACTGTTTCAGGTTAAATTATCTTTGCCATCTGTTCTCTTTTTAG TCCTGATGGGAAAGGTGTTTTGTCAGGGCATGCAGATGGAGCCATTGTCA GATATATGTTTGAAGATACTGGGACAGGTTTGACCCAGGTATTTTACATA TTAAATGTTAAAACATTTAAAGTAGACAAACTAAACTAATATTAGGTATA TTTCTTTTTGAGAAGTCCGACTGTTACTAGAAGAGTCAATTGCACTTCAG ACAAACAATCATTCCAAAGAATAATTTGCAAATTTCTTTTTTTTTGAAGT GCATTACACAAAGAATAATACAAAGAATTATATGCTATCCTAATATTCAA ATCTCAAGATTGGTTCGATTTTTTCCATAGGGGCAAGTTGTGAAACATGG CTGTCCACCGTATGCCTTGTGTTGGGGCNTACAAGAGAAAATTTTTTAAC ATTTGATACCACAGTATTGTATTATCCTATACTGTGTTAAATGAATGATT TTACTTTACACATCTGCTATAATAATATAATTTAATGAGAATCAATTTTT ACATTAGAGTGCTGTTACATGTTTGGTTTGGCCCCCAGAAAATCAATATA TTATTTTTGGTCTTGCTGATGGAAAGGTTTGTGACTTATGACATTTTGAC TTTTATTATATCATGATATAATGATGGATGATATCTCTTTTAGGATTCAA ATTTTATAAATTGATGAAGTAAAATAGTTGTCTGTTTGACCATACCTCCT AAATCTATAGGGCTGACAAAATGAATTGCAAAAAAAGTGTTTTTAAAACC AGCCTAATGTCACCCCATAAGTGGCCATTTCTTAGCTGAACAGTTAATTT ATTTTTTTGAAAACATATAATTAATTTTACTATACTCGTGAATTTTAAAT ATCAAAAGGTGGTCCTAAAAGTCTCAGCTTTCAAGATGGTTACATTTAAG AGATGGTATTGTTAGGAAAGGGAGATCTACTTTTTAACCTGGAAATATAT ATTGACGATATAAAGCATACAAACACCTAAAATTTTAGATCACACTTCAA ATGATTGAGTTTGAGAATGATTATTTTCTTCATCTTTCTGTAATGTTTTA AAATTTCCATTTTTTTTTAGGTCAGGATGGCAAGTCTAAAAACCAACAAA TCACAAACTGTCTATGGAACTGGTATCCATTGTATATCTTTGTGTGTCAG GTTGGCATTCTGTTTTAATTACATAAATGATTTTCAAACTATAAAATGAA AGCAATATTACTATTATGTTAAGTCTTTGAAGCTTGTAAATGAAGACATA ATTGAGTACAGCTTTCAAGAAACTACTTTAACAATTCATATTTAAGCATT TTCACAACAGATAATAAACTAAAAATTTTTTTGAAAAAGTTTCATTTAAT ATAAACATTTTCTTGACTGGACAAATCCAATAACTGTTTCAGGTTAAATT ATCTTTGCCATCTGTTCTCTTTTTAGTCCTGATGGGAAAGGTGTTTTGTC AGGGCATGCAGATGGAGCCATTGTCAGATATATGTTTGAAGATACTGGGA CAGGTTTGACCCAGGTATTTTACATATTAAATGTTAAAACATTTAAAGTA GACAAACTAAACTAATATTAGGTATATTTCTTTTTGAGAAGTCCGACTGT TACTAGAAGAGTCAATTGCACTTCAGACAAACAATCATTCCAAAGAATAA TTTGCAAATTTCTTTTTTTTTGAAGTGCATTACACAAAGAATAATACAAA GAATTATATGCTATCCTAATATTCAAATCTCAAGATTGGTTCGATTTTTT CCATAGGGGCAAGTTGTGAAACATGGCTGTCCACCGTATGCCTTGTGTTG GGGCTCATCAATCATTGCAGCAGGATGTGATAAAAGAATTGTTGCATATG GAAAAGAAGGTATTGTTTTTTGAGCTTATGTTTCACGAGAAAATCATTTT TATTTAACAAATGATTAATCCTAATATTTCATTTCCCTAAACTCTCTTTA GGGCGGGTATTACAAAACTTCGACTATTCAAAAGATGATGAGGAAAAAGA GTTCACAGTTGCAATAGCAAGTCCAAGTGGTCAGTCAGTGGTGGTTGGAA GTTATGATAGATTACGTGTTTTCAATTGGAGTCCCCGAAGAGGAGCCTGG GAAGAATCTAAACCAAAAGAGATCAATAATTTATACACCATCAGCTCACT TTCTTGGAAAAGAGATGGTTCAAGGCTTTGTGCTGTAAGTTAGATAATTC CCTCTTATTTTTTGTCCTGCTGGAATATAGGTTTTAATACATAAAGACAG TTTGACTTACATATGGATGAAAAGTTTCAATTAGTATTCTACATGCAAAT ATAAAGAATTTTTTTAAATGGTATTTACAAATATATCATAATACAGTAGC TAAATCTTACTGAATAATATTATTTCTGACTTCAGGGCACACTCTGTGGT GGAGTTGAACTGTTTGATTGCTGTTTGAGAAGATCTATTTTCAAGAATAA ATTTGAAATGACTTATGTTGGGTTGAGCCAGGTAAAATGAAGGATTTTTT GTTATACTTTTGAAGATATTAACCCTTCAACCCTTTCAGACCCGGTACAC ACGATTTAAATCTGCCAAAATACCAAGTCCTGACCACTTGATTTAAAAGG GCATACACCGGATGCTGTTAGAAAGAGTACAAAAATATCTTTTCAATGGT ACAAAAACCATTGCCTAAGTCTCAAGTTAAAACCTTTTATGCCAATTTGA AAATTTGGAAAAAATGTTGCGCGCTGGAAAGGTTAAGAAAAAATTAAATA AGAATCTGTATTTTGTAAAAAATATCTAAAAAATTGTCCAGAGGAAAACC AATTTTCTCTGTCTGTGCGAGAGTGTGGAACATATAACATAGTTGAAAAT AACACATCATCTTTCTTATGAAAATTTCTGCCAACTGGCCTTTTTCAACA TAAAAATGAATTTAATGTTCTTCATTCGCCGCTGTGAGGAGACATTCTTA ATGTTAGCAAAGGAAAGCTTACGTTCTGCTCTCTAAAGAGCAAATCATCT CGTTTCGGTTCTCTAGCCTTCAGAATTTCTCGACTGACTAGTTGGTCACT ATCCTTGTTTTTTTTTAGCCACAGTGCTAGCTGGTTGCAATTGAGGTCAA AAAAAGAAATGTTCTGAACAGATGCGATTCAAGCGCAGGCCCTGGCCATA AGGAATGGCCTTTTTTGAATGAAATGCACAATTATAAAAAAATATTTAGT TATTTTCACTAACATTACAAATACAAAGAAACTTTGTTATTATTAATGCT AACTGTTGATTTCTAGGTTATTGTCAAAAATTTGGCATCAGGAGCCAGAG TTGTTTTAAAATCACATTATGGATACGAGGTTTGTATATAAATAATTTTT ATAAGTAGAAAATCTATCATCAATATTTCTGCCTAATCAACTTTTTCTCA AGAATCTGTAATATCATATTTTAAAGTTATATTTCTTGGCCCATTATTAT CCCTTGCTGATGTTTTTAGATTGATGAAGTGAAAATAATGGGGAAGGACN TTGTCCACCGTATGCCTTGTGTTGGGGCTCATCAATCATTGCAGCAGGAT GTGATAAAAGAATTGTTGCATATGGAAAAGAAGGTTTTGTTTTTTGAGCT TATGTTTCACGAGAAAATCATTTTTATTTAACAAATGATTAATCCTAATA TTTCATTTCCCTAAACTCTCTTTAGGGCGGGTATTACAAAACTTCGACTA TTCAAAAGATGATGAGGAAAAAGAGTTCACAGTTGCAATAGCAAGTCCAA GTGGTCAGTCAGTGGTGGTTGGAAGTTATGATAGATTACGTGTTTTCAAT TGGAGTCCCCGAAGAGGAGCCTGGGAAGAATCTAAACCAAAAGAGATCAA TAATTTATACACCATCAGCTCACTTTCTTGGAAAAGAGATGGTTCAAGGC TTTGTGCTGTAAGTTAGATAATTCCCTCTTATTTTTTGTCCTGCTGGAAT ATAGGTTTTAATACATAAAGACAGTTTGACTTACATATGGATGAAAAGTT TCAATTACTATTCTACATGCAAATATAAAGAATTTTTTTAAATGGTATTT ACAAATATATCATAATACAGTAGCTACATCTTACTGAATAATATTATTTC TGACTTCAGGGCACACTCTGTGGTGGAGTTGAACTGTTTGATTGCTGTTT GAGAAGATCTATTTTCAAGAATAAATTTGAAATGACTTATGTTGGGTTGA GCCAGGTAAAATGAAGGATTTTTTGTTATACTTTTGAAGATATTAACCCT TCAACCCTTTCAGACCCGGTACACACGATTTAAATCTGCCAAAATACCAA GTCCTGACCACTTGATTTAAAAGGGCATACACCGGATGCTGTTAGAAAGA GTACAAAAATATCTTTTCAATGGTACAAAAACCATTGCCTAACTCTCAAG TTAAAACCTTTTATGCCAATTTGAAAATTTGGAAAAAATGTTGCGCGCTG GAAAGGTTAAGAAAAAATTAAATAAGAATCTGTATTTTGTAAAAAATATC TAAAAAATTGTCCAGAGGAAAACCAATTTTCTCTGTCTGTGCGAGAGTGT GGAACATATAACATAGTTGAAAATAACACATCATCTTTCTTATGAAAATT TCTGCCAACTGGCCTTTTTCAACATAAAAATGAATTTAATGTTCTTCATT CGCCGCTGTGAGGAGACATTCTTAATGTTAGCAAAGGAAAGCTTACGTTC TGCTCTCTAAAGAGCAAATCATCTCGTTTCGGTTCTCTAGCCTTCAGAAT TTCTCGACTGACTAGTTGGTCACTATCCTTGTTTTTTTTTAGCCACAGTG CTAGCTGGTTGCAATTGAGGTCAAAAAAAGAAATGTTCTGAACAGATGCG ATTCAAGCGCAGGCCCTGGCCATAAGGAATGGCCTTTTTTGAATGAAATG CACAATTATAAAAAAATATTTAGTTATTTTCACTAACATTACAAATACAA AGAAACTTTGTTATTATTAATGCTAACTGTTGATTTCTAGGTTATTGTCA AAAATTTGGCATCAGGAGCCAGAGTTGTTTTAAAATCACATTATGGATAC GAGGTTTGTATATAAATAATTTTTATAAGTAGAAAATCTATCATCAATAT TTCTGCCTAATCAACTTTTTCTCAAGAATCTGTAATATCATATTTTAAAG TTATATTTCTTGGCCCATTATTATCCCTTGCTGATGTTTTTAGATTGATG AAGTGAAAATAATGGGGAAGGACAGATTTCTTGTTGGACACACTTCAGAA ACATTGCTTGTGGGAGATCTAAACGAAAACAAGCTTAGTGAGGTAAGTTC CTTCCTCAAGAACTATTTTTGAAATTAATATCATAAGATCTTTCAAGTGA CATTATGGAACATAAAAAATAACAGAACTTGATTTTGATAATTATACTGT TTTGTTTTTATGATTCAGCTTCCATGGCATAATTCAGGTGGAAATGAGAA GTTCTTCTTTGAAAATGAAACAGTAAGTTTGTTTAAAATTCAATACATTT TTCTTTTGGAAAAAGTAAAACAAAGAAAGTAGATTACTTCAAAACAATTT TAAATCTTTCAAAGGTTCCTTAGCTTGCCACTGCTAAAATCATACCTTGT TAGCATTACGAGTTTCAGGACTTCTATGTGTTACTTTGTTATTGTTTTAA TCAATTAGGTTTGTATGGTATTCAATGCAGGAGAATTATCTTTGATCGAG TATGGTCAAAATGAAGTGTTAGCTACAGTCAGAACAGAATTCATGAACCC TCATCTTATAAGGTAATGATTTTTCAAATGCAGATATGAAACGATTGTGA AATGTATTCTAGGGTTATGATATTTAGAATTTGATTTTTGAATAGTCTAT TCCATTAAACAAATTTCTTTAGATATTTCAGAATAATTTACCCTGCTGCC TCACATTCCTGCCTTGGTATTTTTACCGGAAAGAATTGAAACTCCATTCT TTCTTACCAGCCATCCCTCTGTAAGAACTAGACTGGACGCTAGTCAGTAT GATTCTCAATAGCAGTATTTCTTGACTTAACTTTTTCAGCGTACGTTTGA ATGAAAGAAAGCTGAAAGATCAAGAAGACAATAAAAAATTGGGTTATTTG ATTGACCTGAAAACTATATGTGTCAGTAAGTAAACGTTTTGTAAAAAATC GACTATTTTGGCATTATTAGCAGCATTTCTCATTTCTATCGGGTGAATAC AGATTTGAAATATTTGGGCTATTATGCTAAGCTCAGTTGTAAATTAGCCT TAGGATTTTAGTTTTTTTTTACTTTAAATTTCTTTAATTTTCAGTGGACT TGATGTCAGGGATGGTTGTAGCCAATATTTCACATGATGTCAAAATTGAC TGGTTAGAGGTACTCCACTCTCATCTCTTATTGTCTCTAAGTTATGAATT TCCAAGATAATATATTTATATTTAGATGCAAATCTCAAGAGTTTGAGTGG TTGACAAATCTTGAATTTTCTCTGTTTATAGATGAATGAGACTGGAAAGA AGCTCTTATTCCGAGACAAAAAACTGAGGGTAAGTAATTTAGATAATTTC CGATACTCTTCCTCAAATTAGGACAGTTGTTTTAAAGTGTGAAGTGATTT CTGGTTTCAACTTCTAATTATAGTACACTTACCTCTCAACTTTTAGTTAT TATTGGCAGATATTCAAAGTGAAACAAAAACCACTATTTCTACATATTGC TCTTATGTGCAATGGGTGCCTTTGAGTGATGTTGTGGTAGCTCAAAGCAG AAGCGATCTTTGTGTTTGGTACAATATTGAATCACCTGAACGAGTGACTA TCGTTCCCATCAAAGTAAGAGACCATTTTGTTCATTTCCTCTCAAAGGCT TAACGGCGATCAAAAATAAACTATTTAAAAACTATTTTTTATGTCTTTTG ATTCTTTCTAATGACTTGTAATAATGACTTGTAATTTGAGGGGTCGTTTG TTAAATTTGGTCAACTAGGTAAAAAGCTATGGCCTAAATGCTAAAATATT ACTTTTCAAAAAAGTAAAAAAAATGGCGAAAAATGAGGGTATTAAATCAT CATAAAGATATCATAAAGAAATCTTTCTTTTATCAATTTATTAACGATCG AAGTCTCTTCGTCCTCTTCGTGGCCAGTTTCCAAGAAAGGTGGTCAACAA TCGAGGAGATGTTGAGTGACCCCTAAGTTCGCCTGAGCTTACAGTGTGTG ATTTCTTTTTGTGGGGTTACACGAAACAAGAAATCTGGGAGCAACTCACA AATTTGCAATTCCAGACCCTTGATCAATGAAAGCTTCAATCAAATATGAA GACTTGGCAAATCGATTTTATATTATTTTCTCATGATAAAAAATTACATT AATTGACTTTGTGACCCTTGTTTTACACGGTTTAGCCTACGATCGAGGCA CCCTTATTCTGGATTTGTTATTCGAATTTCAAATCAAAGTTGAAAAGACA CTGGTTTGGAATGTTAAGTTAAACTTTCCTTGCATGTTTAGGGTGACATC ACAGACCTTGAGAAGATCGAGGGTAAAACAAACGTGATCGTACAAGAAGG TGTACAATCGATCAATTACACATTAGACGAAGGGCTAATCGAGTTTGGAA CTGCTATGGAAGATGGTGATTATGCTAGGTTTGTCTTATTGGTTATTTTA ATTAGATTTTAAGACATTGATCTTCTAATGCTGCAGCAAATTTTTTAACA TAAACAAACTTATTAAGATAAGGGTTATTTTTTATTGAGATTTTCTTCTC AAAATGCTTCAACTGAGAGATTTTACCTGTCGTCTTTTCTTCGTTGTATT ACTTTTTTTTGCTCAGAAATCTGATATAAAATTGTATTTTGTTCAGGGCT GTTTCGTTTCTGGAAGGATTGGAGATGTCACCTGAAACAGAAGCTATGTG GAAGACTCTCAGCAAGGTTGCCATGGAGAATAAAGAGCTTTTCATCGCCG AAAGGTAAGACATAAATATGATCCAACAATCATGATTCAATGCATAGTCC GAAACATTTTTTCTACAAAGGCTCTTTTAAGAGGATTCTGTAATGGGGTT CTTAAACTTTTCAAAATATATTTTTGCTTTGTAGGTGTTTTGCTGCACTA GGAGATGTTTCTAAAGCTCGCTATTTACGTGGAATCAACGACTTGATCGA TGAACTGAACCCAAGTTATGGAGATCCTATGTATCATCCGACTATTCGCG CCAAACTGGCCATTTTTGAGAAACAATTCAAACTTGCAGAAAGTATTTAC TTGGAACAAGGACAAGTTGATGAAGCGATGGAGATGTACCAAGAAGTTCA CAAGTGGGATGAATCTTTGGCCATCGCCGAAGCCAAAAGACATCCAGAAC TAGAGAACCTTAGAAGCTATTACTTGCAATATTTGATGAAGTCAGGCCAA GAAGAAAAAGCTGGAGAGGTTAAAACCTTGAATTTAGTTAACAGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000661XLOC_000661Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001236-exon-sc0000007-1575043694:1147551..1147793TCONS_00001236-exon-sc0000007-1575043694:1147551..1147793Clytia hemisphaericaexon
TCONS_00001236-exon-sc0000007-1575043694:1147213..1147356TCONS_00001236-exon-sc0000007-1575043694:1147213..1147356Clytia hemisphaericaexon
TCONS_00001236-exon-sc0000007-1575043694:1146533..1146645TCONS_00001236-exon-sc0000007-1575043694:1146533..1146645Clytia hemisphaericaexon
TCONS_00001236-exon-sc0000007-1575043694:1146360..1146399TCONS_00001236-exon-sc0000007-1575043694:1146360..1146399Clytia hemisphaericaexon
TCONS_00001236-exon-sc0000007-1575043694:1146129..1146197TCONS_00001236-exon-sc0000007-1575043694:1146129..1146197Clytia hemisphaericaexon
TCONS_00001236-exon-sc0000007-1575043694:1145570..1145649TCONS_00001236-exon-sc0000007-1575043694:1145570..1145649Clytia hemisphaericaexon
TCONS_00001236-exon-sc0000007-1575043694:1143780..1143867TCONS_00001236-exon-sc0000007-1575043694:1143780..1143867Clytia hemisphaericaexon
TCONS_00001236-exon-sc0000007-1575043694:1143435..1143537TCONS_00001236-exon-sc0000007-1575043694:1143435..1143537Clytia hemisphaericaexon
TCONS_00001236-exon-sc0000007-1575043694:1143110..1143342TCONS_00001236-exon-sc0000007-1575043694:1143110..1143342Clytia hemisphaericaexon
TCONS_00001236-exon-sc0000007-1575043694:1141089..1141184TCONS_00001236-exon-sc0000007-1575043694:1141089..1141184Clytia hemisphaericaexon
TCONS_00001236-exon-sc0000007-1575043694:1140241..1140303TCONS_00001236-exon-sc0000007-1575043694:1140241..1140303Clytia hemisphaericaexon
TCONS_00001236-exon-sc0000007-1575043694:1140002..1140100TCONS_00001236-exon-sc0000007-1575043694:1140002..1140100Clytia hemisphaericaexon
TCONS_00001236-exon-sc0000007-1575043694:1139822..1139875TCONS_00001236-exon-sc0000007-1575043694:1139822..1139875Clytia hemisphaericaexon
TCONS_00001236-exon-sc0000007-1575043694:1139532..1139635TCONS_00001236-exon-sc0000007-1575043694:1139532..1139635Clytia hemisphaericaexon
TCONS_00001236-exon-sc0000007-1575043694:1139169..1139254TCONS_00001236-exon-sc0000007-1575043694:1139169..1139254Clytia hemisphaericaexon
TCONS_00001236-exon-sc0000007-1575043694:1138935..1138999TCONS_00001236-exon-sc0000007-1575043694:1138935..1138999Clytia hemisphaericaexon
TCONS_00001236-exon-sc0000007-1575043694:1138765..1138812TCONS_00001236-exon-sc0000007-1575043694:1138765..1138812Clytia hemisphaericaexon
TCONS_00001236-exon-sc0000007-1575043694:1138480..1138647TCONS_00001236-exon-sc0000007-1575043694:1138480..1138647Clytia hemisphaericaexon
TCONS_00001236-exon-sc0000007-1575043694:1137666..1137802TCONS_00001236-exon-sc0000007-1575043694:1137666..1137802Clytia hemisphaericaexon
TCONS_00001236-exon-sc0000007-1575043694:1137340..1137447TCONS_00001236-exon-sc0000007-1575043694:1137340..1137447Clytia hemisphaericaexon
TCONS_00001236-exon-sc0000007-1575043694:1136849..1137209TCONS_00001236-exon-sc0000007-1575043694:1136849..1137209Clytia hemisphaericaexon
TCONS_00001236-exon-sc0000007-1510915933:1147551..1147793TCONS_00001236-exon-sc0000007-1510915933:1147551..1147793Clytia hemisphaericaexon
TCONS_00001236-exon-sc0000007-1510915933:1147213..1147356TCONS_00001236-exon-sc0000007-1510915933:1147213..1147356Clytia hemisphaericaexon
TCONS_00001236-exon-sc0000007-1510915933:1146533..1146645TCONS_00001236-exon-sc0000007-1510915933:1146533..1146645Clytia hemisphaericaexon
TCONS_00001236-exon-sc0000007-1510915933:1146360..1146399TCONS_00001236-exon-sc0000007-1510915933:1146360..1146399Clytia hemisphaericaexon
TCONS_00001236-exon-sc0000007-1510915933:1146129..1146197TCONS_00001236-exon-sc0000007-1510915933:1146129..1146197Clytia hemisphaericaexon
TCONS_00001236-exon-sc0000007-1510915933:1145570..1145649TCONS_00001236-exon-sc0000007-1510915933:1145570..1145649Clytia hemisphaericaexon
TCONS_00001236-exon-sc0000007-1510915933:1143780..1143867TCONS_00001236-exon-sc0000007-1510915933:1143780..1143867Clytia hemisphaericaexon
TCONS_00001236-exon-sc0000007-1510915933:1143435..1143537TCONS_00001236-exon-sc0000007-1510915933:1143435..1143537Clytia hemisphaericaexon
TCONS_00001236-exon-sc0000007-1510915933:1143110..1143342TCONS_00001236-exon-sc0000007-1510915933:1143110..1143342Clytia hemisphaericaexon
TCONS_00001236-exon-sc0000007-1510915933:1141089..1141184TCONS_00001236-exon-sc0000007-1510915933:1141089..1141184Clytia hemisphaericaexon
TCONS_00001236-exon-sc0000007-1510915933:1140241..1140303TCONS_00001236-exon-sc0000007-1510915933:1140241..1140303Clytia hemisphaericaexon
TCONS_00001236-exon-sc0000007-1510915933:1140002..1140100TCONS_00001236-exon-sc0000007-1510915933:1140002..1140100Clytia hemisphaericaexon
TCONS_00001236-exon-sc0000007-1510915933:1139822..1139875TCONS_00001236-exon-sc0000007-1510915933:1139822..1139875Clytia hemisphaericaexon
TCONS_00001236-exon-sc0000007-1510915933:1139532..1139635TCONS_00001236-exon-sc0000007-1510915933:1139532..1139635Clytia hemisphaericaexon
TCONS_00001236-exon-sc0000007-1510915933:1139169..1139254TCONS_00001236-exon-sc0000007-1510915933:1139169..1139254Clytia hemisphaericaexon
TCONS_00001236-exon-sc0000007-1510915933:1138935..1138999TCONS_00001236-exon-sc0000007-1510915933:1138935..1138999Clytia hemisphaericaexon
TCONS_00001236-exon-sc0000007-1510915933:1138765..1138812TCONS_00001236-exon-sc0000007-1510915933:1138765..1138812Clytia hemisphaericaexon
TCONS_00001236-exon-sc0000007-1510915933:1138480..1138647TCONS_00001236-exon-sc0000007-1510915933:1138480..1138647Clytia hemisphaericaexon
TCONS_00001236-exon-sc0000007-1510915933:1137666..1137802TCONS_00001236-exon-sc0000007-1510915933:1137666..1137802Clytia hemisphaericaexon
TCONS_00001236-exon-sc0000007-1510915933:1137340..1137447TCONS_00001236-exon-sc0000007-1510915933:1137340..1137447Clytia hemisphaericaexon
TCONS_00001236-exon-sc0000007-1510915933:1136849..1137209TCONS_00001236-exon-sc0000007-1510915933:1136849..1137209Clytia hemisphaericaexon
TCONS_00001236-exon-sc0000007-1491911889:1147551..1147793TCONS_00001236-exon-sc0000007-1491911889:1147551..1147793Clytia hemisphaericaexon
TCONS_00001236-exon-sc0000007-1491911889:1147213..1147356TCONS_00001236-exon-sc0000007-1491911889:1147213..1147356Clytia hemisphaericaexon
TCONS_00001236-exon-sc0000007-1491911889:1146533..1146645TCONS_00001236-exon-sc0000007-1491911889:1146533..1146645Clytia hemisphaericaexon
TCONS_00001236-exon-sc0000007-1491911889:1146360..1146399TCONS_00001236-exon-sc0000007-1491911889:1146360..1146399Clytia hemisphaericaexon
TCONS_00001236-exon-sc0000007-1491911889:1146129..1146197TCONS_00001236-exon-sc0000007-1491911889:1146129..1146197Clytia hemisphaericaexon
TCONS_00001236-exon-sc0000007-1491911889:1145570..1145649TCONS_00001236-exon-sc0000007-1491911889:1145570..1145649Clytia hemisphaericaexon
TCONS_00001236-exon-sc0000007-1491911889:1143780..1143867TCONS_00001236-exon-sc0000007-1491911889:1143780..1143867Clytia hemisphaericaexon
TCONS_00001236-exon-sc0000007-1491911889:1143435..1143537TCONS_00001236-exon-sc0000007-1491911889:1143435..1143537Clytia hemisphaericaexon
TCONS_00001236-exon-sc0000007-1491911889:1143110..1143342TCONS_00001236-exon-sc0000007-1491911889:1143110..1143342Clytia hemisphaericaexon
TCONS_00001236-exon-sc0000007-1491911889:1141089..1141184TCONS_00001236-exon-sc0000007-1491911889:1141089..1141184Clytia hemisphaericaexon
TCONS_00001236-exon-sc0000007-1491911889:1140241..1140303TCONS_00001236-exon-sc0000007-1491911889:1140241..1140303Clytia hemisphaericaexon
TCONS_00001236-exon-sc0000007-1491911889:1140002..1140100TCONS_00001236-exon-sc0000007-1491911889:1140002..1140100Clytia hemisphaericaexon
TCONS_00001236-exon-sc0000007-1491911889:1139822..1139875TCONS_00001236-exon-sc0000007-1491911889:1139822..1139875Clytia hemisphaericaexon
TCONS_00001236-exon-sc0000007-1491911889:1139532..1139635TCONS_00001236-exon-sc0000007-1491911889:1139532..1139635Clytia hemisphaericaexon
TCONS_00001236-exon-sc0000007-1491911889:1139169..1139254TCONS_00001236-exon-sc0000007-1491911889:1139169..1139254Clytia hemisphaericaexon
TCONS_00001236-exon-sc0000007-1491911889:1138935..1138999TCONS_00001236-exon-sc0000007-1491911889:1138935..1138999Clytia hemisphaericaexon
TCONS_00001236-exon-sc0000007-1491911889:1138765..1138812TCONS_00001236-exon-sc0000007-1491911889:1138765..1138812Clytia hemisphaericaexon
TCONS_00001236-exon-sc0000007-1491911889:1138480..1138647TCONS_00001236-exon-sc0000007-1491911889:1138480..1138647Clytia hemisphaericaexon
TCONS_00001236-exon-sc0000007-1491911889:1137666..1137802TCONS_00001236-exon-sc0000007-1491911889:1137666..1137802Clytia hemisphaericaexon
TCONS_00001236-exon-sc0000007-1491911889:1137340..1137447TCONS_00001236-exon-sc0000007-1491911889:1137340..1137447Clytia hemisphaericaexon
TCONS_00001236-exon-sc0000007-1491911889:1136849..1137209TCONS_00001236-exon-sc0000007-1491911889:1136849..1137209Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000007supercontigsc0000007:1136849..1147793 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.138542 0 0.639298 1.2522 0.760272 1.03367 0.726659 0.678112 0.237178 0.434226 0.140403 0.646267 0 0.0972072 0.0786444 0.253254 0 0.108342 0 0.154045 0 0.253974 0.161596 0 1.36444 2.1633 0 0 0 0
Blast
BLAST of TCONS_00001236 vs. Swiss-Prot (Human)
Match: IF172 (Intraflagellar transport protein 172 homolog OS=Homo sapiens GN=IFT172 PE=1 SV=2)

HSP 1 Score: 1090.1 bits (2818), Expect = 0.000e+0
Identity = 510/761 (67.02%), Postives = 636/761 (83.57%), Query Frame = 1
Query:  205 MQLKHLKTTLAPQDGAAKITAMAWAPNNTKMAIVSTDRVVVLFDEHGEKRDKFGTKPGDAKTGKKGYQVKGLAFSPDSTKIAVGQTDNIVFVYKIGDEWGERKVICNKFLQQSAVTCLVWPPENQYIIFGLADGKVRMASLKTNKSQTVYGTGIHCISLCVSPDGKGVLSGHADGAIVRYMFEDTGTGLTQGQVVKHGCPPYALCWGS-SIIAAGCDKRIVAYGKEGRVLQNFDYSKDDEEKEFTVAIASPSGQSVVVGSYDRLRVFNWSPRRGAWEESKPKEINNLYTISSLSWKRDGSRLCAGTLCGGVELFDCCLRRSIFKNKFEMTYVGLSQVIVKNLASGARVVLKSHYGYEIDEVKIMGKDRFLVGHTSETLLVGDLNENKLSELPWHNSGGNEKFFFENETVCMVFNAGELSLIEYGQNEVLATVRTEFMNPHLISVRLNERKLKDQEDNKKLGYLIDLKTICVMDLMSGMVVANISHDVKIDWLEMNETGXXXXXXXXXXXXXXADIQSETKTTISTYCSYVQWVPLSDVVVAQSRSDLCVWYNIESPERVTIVPIKGDITDLEKIEGKTNVIVQEGVQSINYTLDEGLIEFGTAMEDGDYARAVSFLEGLEMSPETEAMWKTLSKVAMENKELFIAERCFAALGDVSKARYLRGINDLIDELNPSY-GDPMYHPTIRAKLAIFEKQFKLAESIYLEQGQVDEAMEMYQEVHKWDESLAIAEAKRHPELENLRSYYLQYLMKSGQEEKAGEVK 2481
            M LKHL+T L+PQDGAAK+T MAW+ NN K A+ + DRVV+L+DEHGE+RDKF TKP D K G+K Y VKG+AFSPDSTKIA+GQTDNI++VYKIG++WG++KVICNKF+Q SAVTCL WP E   I+FGLA+GKVR+A+ KTNKS T+YGT  + +SL  +  GKG+LSGHADG IVRY F+D G+G +QG++V H CPPYAL W + SI+AAGCD++IVAYGKEG +LQ FDYS+D +E+EFT A++SP GQSVV+GSYDRLRVFNW PRR  WEE+KPKEI NLYTI++L+WKRDGSRLC GTLCGGVE FDCCLRRSI+KNKFE+TYVG SQVIVKNL+SG RVVLKSHYGYE++EVKI+GK+R+LV HTSETLL+GDLN N+LSE+ W  SGGNEK+FFENE VCM+FNAGEL+L+EYG N+ L +VRTEFMNPHLISVR+NER  +  EDNKKL YLID+KTI ++DL+ G  +  +SH+ ++DWLE+NETG KLLFRD+KLRL L DI+S +KT I  +CSY+QWVP SDV+VAQ+R+ LCVWYNIE+PERVT+  I+GD+  LE+  GKT V+V EGV ++ YTLDEGLIEFGTA++DG+Y RA +FLE LEM+PETEAMWKTLSK+A+E ++L IAERCF+ALG V+KAR+L   N++ D+++  Y G+      +RA+LA+ EK +KLAE I+LEQ  V+EAM MYQE+H+WDE +A+AEAK HP LE LR  Y Q+LM + QEE+AGE++
Sbjct:    1 MHLKHLRTLLSPQDGAAKVTCMAWSQNNAKFAVCTVDRVVLLYDEHGERRDKFSTKPADMKYGRKSYMVKGMAFSPDSTKIAIGQTDNIIYVYKIGEDWGDKKVICNKFIQTSAVTCLQWPAE-YIIVFGLAEGKVRLANTKTNKSSTIYGTESYVVSLTTNCSGKGILSGHADGTIVRYFFDDEGSGESQGKLVNHPCPPYALAWATNSIVAAGCDRKIVAYGKEGHMLQTFDYSRDPQEREFTTAVSSPGGQSVVLGSYDRLRVFNWIPRRSIWEEAKPKEITNLYTITALAWKRDGSRLCVGTLCGGVEQFDCCLRRSIYKNKFELTYVGPSQVIVKNLSSGTRVVLKSHYGYEVEEVKILGKERYLVAHTSETLLLGDLNTNRLSEIAWQGSGGNEKYFFENENVCMIFNAGELTLVEYGNNDTLGSVRTEFMNPHLISVRINERCQRGTEDNKKLAYLIDIKTIAIVDLIGGYNIGTVSHESRVDWLELNETGHKLLFRDRKLRLHLYDIESCSKTMILNFCSYMQWVPGSDVLVAQNRNSLCVWYNIEAPERVTMFTIRGDVIGLERGGGKTEVMVMEGVTTVAYTLDEGLIEFGTAIDDGNYIRATAFLETLEMTPETEAMWKTLSKLALEARQLHIAERCFSALGQVAKARFLHETNEIADQVSREYGGEGTDFYQVRARLAMLEKNYKLAEMIFLEQNAVEEAMGMYQELHRWDECIAVAEAKGHPALEKLRRSYYQWLMDTQQEERAGELQ 760          
The following BLAST results are available for this feature:
BLAST of TCONS_00001236 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
IF1720.000e+067.02Intraflagellar transport protein 172 homolog OS=Ho... [more]
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