TCONS_00001233 (transcript) - C. hemisphaerica

Overview
NameTCONS_00001233
Unique NameTCONS_00001233
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2418

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00001233 ID=TCONS_00001233|Name=TCONS_00001233|organism=Clytia hemisphaerica|type=transcript|length=2418bp
AAGTGATGTTCCCATACATTCTGATTATACTAAATTTACTAATTGTATCA
CGCTGTCCAAGCAGCTGATTCTTTTAtcatttgtatttattttatttaga
cataaaaaataaaaaacaatatgCAGCTTAAACACTTAAAAACTACACTG
GCTCCCCAGGATGGAGCTGCTAAGATCACAGCAATGGCATGGGCTCCTAA
CAATACCAAAATGGCAATAGTATCAACTGATCGtgtagttgttctttttg
atgAACATGGAGAAAAAAGGGACAAATTTGGAACAAAACCTGGTGATGCT
AAAACTGGGAAGAAAGGTTACCAAGTGAAAGGACTAGCATTTTCTCCTGA
TTCCACCAAGATAGCTGTTGGACAAACAGATAACATTGTTTTTGTATACA
AGATTGGTGACGAATGgGGCGAAAGAAAAGTTATATGCAACAAGTTTCTC
CAACAGAGTGCTGTTACATGTTTGGTTTGGCCCCCAGAAAATCAATATAT
TATTTTTGGTCTTGCTGATGGAAAGgTCAGGATGGCAAGTctaaaaacca
acaaatcacaAACTGTCTATGGAACTGGTATCCATTGTATATCTTTGTGT
GTCAGTCCTGATGGGAAAGGTGTTTTGTCAGGGCATGCAGATGGAGCCAT
TGTCAGATATATGTTTGAAGATACTGGGACAGGTTTGACCCAGGGGCAAG
TTGTGAAACATGGCTGTCCACCGTATGCCTTGTGTTGGGGCTCATCAATC
ATTGCAGCAGGATGTGATAAAAGAATTGTTGCATATGGAAAAGAAGGGCG
GGTATTACAAAACTTCGACTATTCAAAAGATGATGAGGAAAAAGAGTTCA
CAGTTGCAATAGCAAGTCCAAGTGGTCAGTCAGTGGTGGTTGGAAGTTAT
GATAGATTACGTGTTTTCAATTGGAGTCCCCGAAGAGGAGCCTGGGAAGA
ATCTAAACCAAAAGAGATCAATAATTTATACACCATCAGCTCACTTTCTT
GGAAAAGAGATGGTTCAAGGCTTTGTGCTGGCACACTCTGTGGTGGAGTT
GAACTGTTTGATTGCTGTTTGAGAAGATCTATTTTCAAGAATAAATTTGA
AATGACTTATGTTGGGTTGAGCCAGGTTATTGTCAAAAATTTGGCATCAG
GAGCCAGAGTTGTTTTAAAATCACATTATGGATACGAGATTGATGAAGTG
AAAATAATGGGGAAGGACAGATTTCTTGTTGGACACACTTCAGAAACATT
GCTTGTGGGAGATCTAAACGAAAACAAGCTTAGTGAGCTTCCATGGCATA
ATTCAGGTGGAAATGAGAAGttcttctttgaaaatgaaacaGTTTGTATG
GTATTCAATGCAGGAGAATTATCTTTGATCGAGTATGGTCAAAATGAAGT
GTTAGCTACAGTCAGAACAGAATTCATGAACCCTCATCTTATAAGCGTAC
GTTTGAATGAAAGAAAGCTGAAAGATCAAGAAGACAATAAAAAATTGGGT
TATTTGATTGACCTGAAAACTATATGTGTCAtgGACTTGATGTCAGGGAT
GGTTGTAGCCAATATTTCACATGATgtcaaaattgactggttagaGATGA
ATGAGACTGGAAAGAAGCTCTTATTCCGAGACAAAAAACTGAGGTTATTA
TTGGCAGATATTCAAAGTGAAACAAAAACCACTATTTCTACATATTGCTC
TTATGTGCAATGGGTGCCTTTGAGTGATGTTGTGGTAGCTCAAAGCAGAA
GCGATCTTTGTGTTTGGTACAATATTGAATCACCTGAACGAGTGACTATC
GTTCCCATCAAAGGTGACATCACAGACCTTGAGAAGATCGAGGGTAAAAC
AAACGTGATCGTACAAGAAGGTGTACAATCGATCAATTACACATTAGACG
AAGGGCTAATCGAGTTTGGAACTGCTATGGAAGATGGTGATTATGCTAGG
GCTGTTTCGTTTCTGGAAGGATTGGAGATGTCACCTGAAACAGAAGCTAT
GTGGAAGACTCTCAGCAAGGTTGCCATGGAGAATAAAGAGCTTTTCATCG
CCGAAAGGTGTTTTGCTGCACTAGGAGATGTTTCTAAAGCTCGCTATTTA
CGTGGAATCAACGACTTGATCGATGAACTGAACCCAAGTTATGGAGATCC
TATGTATCATCCGACTATTCGCGCCAAACTGGCCATTTTTGAGAAACAAT
TCAAACTTGCAGAAAGTATTTACTTGGAACAAGGACAAGTTGATGAAGCG
ATGGAGATGTACCAAGAAGTTCACAAGTGGGATGAATCTTTGGCCATCGC
CGAAGCCAAAAGACATCCAGAACTAGAGAACCTTAGAAGCTATTACTTGC
AATATTTGATGAAGTCAGGCCAAGAAGAAAAAGCTGGAGAGGTTAAAACC
TTGAATTTAGTTAACAGA
Run BLAST on NCBI

transcript from alignment at sc0000007:1136849..1147709-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00001233 ID=TCONS_00001233|Name=TCONS_00001233|organism=Clytia hemisphaerica|type=transcript|length=10861bp|location=Sequence derived from alignment at sc0000007:1136849..1147709- (Clytia hemisphaerica)
AAGTGATGTTCCCATACATTCTGATTATACTAAATTTACTAATTGTATCA CGCTGTCCAAGCAGCTGATTCTTTTATCATTTGTATTTATTTTATTTAGA CATAAAAAATAAAAAACAATATGCAGCTTAAACACTTAAAAACTACACTG GCTCCCCAGGTATGAAAACTTTCTTTTTTACAGTGTTGTAACTTTTCTCT TCATATAAAAAACTATTTAGGAATGAAATATTAAAGAACTCAAAATATAA CCATTGCTGAACTTTATCTTTTTCATTTCACCCAGAGGCAAGACTGTTTA ATCCTTTCTAGTATGATTTATTGTTATACCTTTAAATTGTAATTTTTATG AAGGATGGAGCTGCTAAGATCACAGCAATGGCATGGGCTCCTAACAATAC CAAAATGGCAATAGTATCAACTGATCGTGTAGTTGTTCTTTTTGATGAAC ATGGAGAAAAAAGGGACAAATTTGGAACAAAACCTGGTGATGCTAAAGTA AGCTCTATCTAAGTCAAAAAATCCCTTTGTGATAGAACAAATAAAAGTTA TCACATGATATCGATTACAATATGGGATGTATTATATTAAGTTAAACTTT TTCCTCATATTTTTGAGCCCGTATGCCAGGAAACTATCAAAAACTTTGAA CAAGAAAAATATATCCAATATTGTGCGAGTAAGTTTGATAATTGGTTTAG CATTAACTTGAAAAATACGACCAAACTTTTCTCTCTCCATTTGTGTCTTT TTCTATGTTTTTTTTTCTCTTCATGCATTTTGTTCTTCCTCTATTTTGAT GAAATTAACACCAAAACATTTATAAAAAATCCAAAGGTCATTAAAATGTT AAAAACATTCTTTTGTATAACTCTTCGGATGATTTGCTGCTCTATCAGCC AATCAGATTGCTCATATTTTTCATGTTGATGAAAAGATTAAATTATTTTA GTAGTCACATAAGCATAAGCCTTGGATGAAATAATGAATCTTCTTCATTT ATTGATTTCAAATCTTTCTTACTATCCACACCAAAGTTACCTTTCTAAAT GATTGTTCTTTTAGACTGGGAAGAAAGGTTACCAAGTGAAAGGACTAGCA TTTTCTCCTGATTCCACCAAGATAGCTGTTGGACAAACAGATAACATTGT TTTTGTATACAAGATTGGTGACGAATGGTAAGACTAAGAACATTGATCTT TCTAAAAACTGAAACATCTACAGTCAGATATTATTTACTTATATTTGAAG ATCGAACATAATATGAAAATGTTATTTATATATATTAATTAATTTTTGAT TTTATTTTAGGGGCGAAAGAAAAGTTATATGCAACAAGTTTCTCCAACAG GTAAAGTATCTTTTTAAATTGATTATTATTTCATCACAAGAGAAATTTTT TTAACATTTGATACCATAGTATTGTATTATCCTATACTGTGTTAAATGAA TGATTTTACTTTACACATCTGCTATAATAATATAATTTAATGAGGATCAA TTTTTACATTAGAGTGCTGTTACATGTTTGGTTTGGCCCCCAGAAAATCA ATATATTATTTTTGGTCTTGCTGATGGAAAGGTTTGTGACTTTTGACATT TTGACTTTTATGATGGATGATATCTCTTTTGGGATTCAAATTTTATAAAT TGATAAAGTAAAATAGTTGTCTGTTTGACCATACCTCCTAAATCTATAGG GCTGACAAAATGAATGGCAAAAAAAGTGTTTTTAAAACCAGCCTAATGTC ACCCCATAAGTGACCATTTCTTAGCTGAACAGTTAATTTATTTTTTTGAA AACAAATAATTAATTTTACTATACTCATGAATTTTAAAAATCAAAAGGTG ATCCTAAAAGTCTCAGCTTTCAAAGATGGTTACATTTAAGAGATGGTATT GGTAGGAAAGGGAGATCTACTTTTTAACCTGGAAATATATATTGACGATA TAAAGCATACAAACACCTAAAATTTTAGATCACACTTCAAATGATTGAGT TTGAGAATGATTATTTTCTTCATCTTTCTGTAATGTTTTAAAATTTCCAT TTTTTTTTAGGTCAGGATGGCAAGTCTAAAAACCAACAAATCACAAACTG TCTATGGAACTGGTATCCATTGTATATCTTTGTGTGTCAGGTTGGCATTC TGTTTTAATTACATAAATGATTTTCAAACTATAAAATGAAAGCAATATTA CTATTATGTTAAGTCTTTGAAGCTTGTAAATGAAGACATAATTGAGTACA GCTTTCAAGAAACTACTTTAACAATTCATATTTAAGCATTTTCACAACAG ATAATAAACTAAAAATTTTTTTGAAAAAGTTTCATTTAATATAAACATTT TCTTGACTGGACAAATCCAATAACTGTTTCAGGTTAAATTATCTTTGCCA TCTGTTCTCTTTTTAGTCCTGATGGGAAAGGTGTTTTGTCAGGGCATGCA GATGGAGCCATTGTCAGATATATGTTTGAAGATACTGGGACAGGTTTGAC CCAGGTATTTTACATATTAAATGTTAAAACATTTAAAGTAGACAAACTAA ACTAATATTAGGTATATTTCTTTTTGAGAAGTCCGACTGTTACTAGAAGA GTCAATTGCACTTCAGACAAACAATCATTCCAAAGAATAATTTGCAAATT TCTTTTTTTTTGAAGTGCATTACACAAAGAATAATACAAAGAATTATATG CTATCCTAATATTCAAATCTCAAGATTGGTTCGATTTTTTCCATAGGGGC AAGTTGTGAAACATGGCTGTCCACCGTATGCCTTGTGTTGGGGCNTACAA GAGAAAATTTTTTAACATTTGATACCACAGTATTGTATTATCCTATACTG TGTTAAATGAATGATTTTACTTTACACATCTGCTATAATAATATAATTTA ATGAGAATCAATTTTTACATTAGAGTGCTGTTACATGTTTGGTTTGGCCC CCAGAAAATCAATATATTATTTTTGGTCTTGCTGATGGAAAGGTTTGTGA CTTATGACATTTTGACTTTTATTATATCATGATATAATGATGGATGATAT CTCTTTTAGGATTCAAATTTTATAAATTGATGAAGTAAAATAGTTGTCTG TTTGACCATACCTCCTAAATCTATAGGGCTGACAAAATGAATTGCAAAAA AAGTGTTTTTAAAACCAGCCTAATGTCACCCCATAAGTGGCCATTTCTTA GCTGAACAGTTAATTTATTTTTTTGAAAACATATAATTAATTTTACTATA CTCGTGAATTTTAAATATCAAAAGGTGGTCCTAAAAGTCTCAGCTTTCAA GATGGTTACATTTAAGAGATGGTATTGTTAGGAAAGGGAGATCTACTTTT TAACCTGGAAATATATATTGACGATATAAAGCATACAAACACCTAAAATT TTAGATCACACTTCAAATGATTGAGTTTGAGAATGATTATTTTCTTCATC TTTCTGTAATGTTTTAAAATTTCCATTTTTTTTTAGGTCAGGATGGCAAG TCTAAAAACCAACAAATCACAAACTGTCTATGGAACTGGTATCCATTGTA TATCTTTGTGTGTCAGGTTGGCATTCTGTTTTAATTACATAAATGATTTT CAAACTATAAAATGAAAGCAATATTACTATTATGTTAAGTCTTTGAAGCT TGTAAATGAAGACATAATTGAGTACAGCTTTCAAGAAACTACTTTAACAA TTCATATTTAAGCATTTTCACAACAGATAATAAACTAAAAATTTTTTTGA AAAAGTTTCATTTAATATAAACATTTTCTTGACTGGACAAATCCAATAAC TGTTTCAGGTTAAATTATCTTTGCCATCTGTTCTCTTTTTAGTCCTGATG GGAAAGGTGTTTTGTCAGGGCATGCAGATGGAGCCATTGTCAGATATATG TTTGAAGATACTGGGACAGGTTTGACCCAGGTATTTTACATATTAAATGT TAAAACATTTAAAGTAGACAAACTAAACTAATATTAGGTATATTTCTTTT TGAGAAGTCCGACTGTTACTAGAAGAGTCAATTGCACTTCAGACAAACAA TCATTCCAAAGAATAATTTGCAAATTTCTTTTTTTTTGAAGTGCATTACA CAAAGAATAATACAAAGAATTATATGCTATCCTAATATTCAAATCTCAAG ATTGGTTCGATTTTTTCCATAGGGGCAAGTTGTGAAACATGGCTGTCCAC CGTATGCCTTGTGTTGGGGCTCATCAATCATTGCAGCAGGATGTGATAAA AGAATTGTTGCATATGGAAAAGAAGGTATTGTTTTTTGAGCTTATGTTTC ACGAGAAAATCATTTTTATTTAACAAATGATTAATCCTAATATTTCATTT CCCTAAACTCTCTTTAGGGCGGGTATTACAAAACTTCGACTATTCAAAAG ATGATGAGGAAAAAGAGTTCACAGTTGCAATAGCAAGTCCAAGTGGTCAG TCAGTGGTGGTTGGAAGTTATGATAGATTACGTGTTTTCAATTGGAGTCC CCGAAGAGGAGCCTGGGAAGAATCTAAACCAAAAGAGATCAATAATTTAT ACACCATCAGCTCACTTTCTTGGAAAAGAGATGGTTCAAGGCTTTGTGCT GTAAGTTAGATAATTCCCTCTTATTTTTTGTCCTGCTGGAATATAGGTTT TAATACATAAAGACAGTTTGACTTACATATGGATGAAAAGTTTCAATTAG TATTCTACATGCAAATATAAAGAATTTTTTTAAATGGTATTTACAAATAT ATCATAATACAGTAGCTAAATCTTACTGAATAATATTATTTCTGACTTCA GGGCACACTCTGTGGTGGAGTTGAACTGTTTGATTGCTGTTTGAGAAGAT CTATTTTCAAGAATAAATTTGAAATGACTTATGTTGGGTTGAGCCAGGTA AAATGAAGGATTTTTTGTTATACTTTTGAAGATATTAACCCTTCAACCCT TTCAGACCCGGTACACACGATTTAAATCTGCCAAAATACCAAGTCCTGAC CACTTGATTTAAAAGGGCATACACCGGATGCTGTTAGAAAGAGTACAAAA ATATCTTTTCAATGGTACAAAAACCATTGCCTAAGTCTCAAGTTAAAACC TTTTATGCCAATTTGAAAATTTGGAAAAAATGTTGCGCGCTGGAAAGGTT AAGAAAAAATTAAATAAGAATCTGTATTTTGTAAAAAATATCTAAAAAAT TGTCCAGAGGAAAACCAATTTTCTCTGTCTGTGCGAGAGTGTGGAACATA TAACATAGTTGAAAATAACACATCATCTTTCTTATGAAAATTTCTGCCAA CTGGCCTTTTTCAACATAAAAATGAATTTAATGTTCTTCATTCGCCGCTG TGAGGAGACATTCTTAATGTTAGCAAAGGAAAGCTTACGTTCTGCTCTCT AAAGAGCAAATCATCTCGTTTCGGTTCTCTAGCCTTCAGAATTTCTCGAC TGACTAGTTGGTCACTATCCTTGTTTTTTTTTAGCCACAGTGCTAGCTGG TTGCAATTGAGGTCAAAAAAAGAAATGTTCTGAACAGATGCGATTCAAGC GCAGGCCCTGGCCATAAGGAATGGCCTTTTTTGAATGAAATGCACAATTA TAAAAAAATATTTAGTTATTTTCACTAACATTACAAATACAAAGAAACTT TGTTATTATTAATGCTAACTGTTGATTTCTAGGTTATTGTCAAAAATTTG GCATCAGGAGCCAGAGTTGTTTTAAAATCACATTATGGATACGAGGTTTG TATATAAATAATTTTTATAAGTAGAAAATCTATCATCAATATTTCTGCCT AATCAACTTTTTCTCAAGAATCTGTAATATCATATTTTAAAGTTATATTT CTTGGCCCATTATTATCCCTTGCTGATGTTTTTAGATTGATGAAGTGAAA ATAATGGGGAAGGACNTTGTCCACCGTATGCCTTGTGTTGGGGCTCATCA ATCATTGCAGCAGGATGTGATAAAAGAATTGTTGCATATGGAAAAGAAGG TTTTGTTTTTTGAGCTTATGTTTCACGAGAAAATCATTTTTATTTAACAA ATGATTAATCCTAATATTTCATTTCCCTAAACTCTCTTTAGGGCGGGTAT TACAAAACTTCGACTATTCAAAAGATGATGAGGAAAAAGAGTTCACAGTT GCAATAGCAAGTCCAAGTGGTCAGTCAGTGGTGGTTGGAAGTTATGATAG ATTACGTGTTTTCAATTGGAGTCCCCGAAGAGGAGCCTGGGAAGAATCTA AACCAAAAGAGATCAATAATTTATACACCATCAGCTCACTTTCTTGGAAA AGAGATGGTTCAAGGCTTTGTGCTGTAAGTTAGATAATTCCCTCTTATTT TTTGTCCTGCTGGAATATAGGTTTTAATACATAAAGACAGTTTGACTTAC ATATGGATGAAAAGTTTCAATTACTATTCTACATGCAAATATAAAGAATT TTTTTAAATGGTATTTACAAATATATCATAATACAGTAGCTACATCTTAC TGAATAATATTATTTCTGACTTCAGGGCACACTCTGTGGTGGAGTTGAAC TGTTTGATTGCTGTTTGAGAAGATCTATTTTCAAGAATAAATTTGAAATG ACTTATGTTGGGTTGAGCCAGGTAAAATGAAGGATTTTTTGTTATACTTT TGAAGATATTAACCCTTCAACCCTTTCAGACCCGGTACACACGATTTAAA TCTGCCAAAATACCAAGTCCTGACCACTTGATTTAAAAGGGCATACACCG GATGCTGTTAGAAAGAGTACAAAAATATCTTTTCAATGGTACAAAAACCA TTGCCTAACTCTCAAGTTAAAACCTTTTATGCCAATTTGAAAATTTGGAA AAAATGTTGCGCGCTGGAAAGGTTAAGAAAAAATTAAATAAGAATCTGTA TTTTGTAAAAAATATCTAAAAAATTGTCCAGAGGAAAACCAATTTTCTCT GTCTGTGCGAGAGTGTGGAACATATAACATAGTTGAAAATAACACATCAT CTTTCTTATGAAAATTTCTGCCAACTGGCCTTTTTCAACATAAAAATGAA TTTAATGTTCTTCATTCGCCGCTGTGAGGAGACATTCTTAATGTTAGCAA AGGAAAGCTTACGTTCTGCTCTCTAAAGAGCAAATCATCTCGTTTCGGTT CTCTAGCCTTCAGAATTTCTCGACTGACTAGTTGGTCACTATCCTTGTTT TTTTTTAGCCACAGTGCTAGCTGGTTGCAATTGAGGTCAAAAAAAGAAAT GTTCTGAACAGATGCGATTCAAGCGCAGGCCCTGGCCATAAGGAATGGCC TTTTTTGAATGAAATGCACAATTATAAAAAAATATTTAGTTATTTTCACT AACATTACAAATACAAAGAAACTTTGTTATTATTAATGCTAACTGTTGAT TTCTAGGTTATTGTCAAAAATTTGGCATCAGGAGCCAGAGTTGTTTTAAA ATCACATTATGGATACGAGGTTTGTATATAAATAATTTTTATAAGTAGAA AATCTATCATCAATATTTCTGCCTAATCAACTTTTTCTCAAGAATCTGTA ATATCATATTTTAAAGTTATATTTCTTGGCCCATTATTATCCCTTGCTGA TGTTTTTAGATTGATGAAGTGAAAATAATGGGGAAGGACAGATTTCTTGT TGGACACACTTCAGAAACATTGCTTGTGGGAGATCTAAACGAAAACAAGC TTAGTGAGGTAAGTTCCTTCCTCAAGAACTATTTTTGAAATTAATATCAT AAGATCTTTCAAGTGACATTATGGAACATAAAAAATAACAGAACTTGATT TTGATAATTATACTGTTTTGTTTTTATGATTCAGCTTCCATGGCATAATT CAGGTGGAAATGAGAAGTTCTTCTTTGAAAATGAAACAGTAAGTTTGTTT AAAATTCAATACATTTTTCTTTTGGAAAAAGTAAAACAAAGAAAGTAGAT TACTTCAAAACAATTTTAAATCTTTCAAAGGTTCCTTAGCTTGCCACTGC TAAAATCATACCTTGTTAGCATTACGAGTTTCAGGACTTCTATGTGTTAC TTTGTTATTGTTTTAATCAATTAGGTTTGTATGGTATTCAATGCAGGAGA ATTATCTTTGATCGAGTATGGTCAAAATGAAGTGTTAGCTACAGTCAGAA CAGAATTCATGAACCCTCATCTTATAAGGTAATGATTTTTCAAATGCAGA TATGAAACGATTGTGAAATGTATTCTAGGGTTATGATATTTAGAATTTGA TTTTTGAATAGTCTATTCCATTAAACAAATTTCTTTAGATATTTCAGAAT AATTTACCCTGCTGCCTCACATTCCTGCCTTGGTATTTTTACCGGAAAGA ATTGAAACTCCATTCTTTCTTACCAGCCATCCCTCTGTAAGAACTAGACT GGACGCTAGTCAGTATGATTCTCAATAGCAGTATTTCTTGACTTAACTTT TTCAGCGTACGTTTGAATGAAAGAAAGCTGAAAGATCAAGAAGACAATAA AAAATTGGGTTATTTGATTGACCTGAAAACTATATGTGTCAGTAAGTAAA CGTTTTGTAAAAAATCGACTATTTTGGCATTATTAGCAGCATTTCTCATT TCTATCGGGTGAATACAGATTTGAAATATTTGGGCTATTATGCTAAGCTC AGTTGTAAATTAGCCTTAGGATTTTAGTTTTTTTTTACTTTAAATTTCTT TAATTTTCAGTGGACTTGATGTCAGGGATGGTTGTAGCCAATATTTCACA TGATGTCAAAATTGACTGGTTAGAGGTACTCCACTCTCATCTCTTATTGT CTCTAAGTTATGAATTTCCAAGATAATATATTTATATTTAGATGCAAATC TCAAGAGTTTGAGTGGTTGACAAATCTTGAATTTTCTCTGTTTATAGATG AATGAGACTGGAAAGAAGCTCTTATTCCGAGACAAAAAACTGAGGGTAAG TAATTTAGATAATTTCCGATACTCTTCCTCAAATTAGGACAGTTGTTTTA AAGTGTGAAGTGATTTCTGGTTTCAACTTCTAATTATAGTACACTTACCT CTCAACTTTTAGTTATTATTGGCAGATATTCAAAGTGAAACAAAAACCAC TATTTCTACATATTGCTCTTATGTGCAATGGGTGCCTTTGAGTGATGTTG TGGTAGCTCAAAGCAGAAGCGATCTTTGTGTTTGGTACAATATTGAATCA CCTGAACGAGTGACTATCGTTCCCATCAAAGTAAGAGACCATTTTGTTCA TTTCCTCTCAAAGGCTTAACGGCGATCAAAAATAAACTATTTAAAAACTA TTTTTTATGTCTTTTGATTCTTTCTAATGACTTGTAATAATGACTTGTAA TTTGAGGGGTCGTTTGTTAAATTTGGTCAACTAGGTAAAAAGCTATGGCC TAAATGCTAAAATATTACTTTTCAAAAAAGTAAAAAAAATGGCGAAAAAT GAGGGTATTAAATCATCATAAAGATATCATAAAGAAATCTTTCTTTTATC AATTTATTAACGATCGAAGTCTCTTCGTCCTCTTCGTGGCCAGTTTCCAA GAAAGGTGGTCAACAATCGAGGAGATGTTGAGTGACCCCTAAGTTCGCCT GAGCTTACAGTGTGTGATTTCTTTTTGTGGGGTTACACGAAACAAGAAAT CTGGGAGCAACTCACAAATTTGCAATTCCAGACCCTTGATCAATGAAAGC TTCAATCAAATATGAAGACTTGGCAAATCGATTTTATATTATTTTCTCAT GATAAAAAATTACATTAATTGACTTTGTGACCCTTGTTTTACACGGTTTA GCCTACGATCGAGGCACCCTTATTCTGGATTTGTTATTCGAATTTCAAAT CAAAGTTGAAAAGACACTGGTTTGGAATGTTAAGTTAAACTTTCCTTGCA TGTTTAGGGTGACATCACAGACCTTGAGAAGATCGAGGGTAAAACAAACG TGATCGTACAAGAAGGTGTACAATCGATCAATTACACATTAGACGAAGGG CTAATCGAGTTTGGAACTGCTATGGAAGATGGTGATTATGCTAGGTTTGT CTTATTGGTTATTTTAATTAGATTTTAAGACATTGATCTTCTAATGCTGC AGCAAATTTTTTAACATAAACAAACTTATTAAGATAAGGGTTATTTTTTA TTGAGATTTTCTTCTCAAAATGCTTCAACTGAGAGATTTTACCTGTCGTC TTTTCTTCGTTGTATTACTTTTTTTTGCTCAGAAATCTGATATAAAATTG TATTTTGTTCAGGGCTGTTTCGTTTCTGGAAGGATTGGAGATGTCACCTG AAACAGAAGCTATGTGGAAGACTCTCAGCAAGGTTGCCATGGAGAATAAA GAGCTTTTCATCGCCGAAAGGTAAGACATAAATATGATCCAACAATCATG ATTCAATGCATAGTCCGAAACATTTTTTCTACAAAGGCTCTTTTAAGAGG ATTCTGTAATGGGGTTCTTAAACTTTTCAAAATATATTTTTGCTTTGTAG GTGTTTTGCTGCACTAGGAGATGTTTCTAAAGCTCGCTATTTACGTGGAA TCAACGACTTGATCGATGAACTGAACCCAAGTTATGGAGATCCTATGTAT CATCCGACTATTCGCGCCAAACTGGCCATTTTTGAGAAACAATTCAAACT TGCAGAAAGTATTTACTTGGAACAAGGACAAGTTGATGAAGCGATGGAGA TGTACCAAGAAGTTCACAAGTGGGATGAATCTTTGGCCATCGCCGAAGCC AAAAGACATCCAGAACTAGAGAACCTTAGAAGCTATTACTTGCAATATTT GATGAAGTCAGGCCAAGAAGAAAAAGCTGGAGAGGTTAAAACCTTGAATT TAGTTAACAGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000661XLOC_000661Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001233-exon-sc0000007-1575043694:1147551..1147709TCONS_00001233-exon-sc0000007-1575043694:1147551..1147709Clytia hemisphaericaexon
TCONS_00001233-exon-sc0000007-1575043694:1147213..1147356TCONS_00001233-exon-sc0000007-1575043694:1147213..1147356Clytia hemisphaericaexon
TCONS_00001233-exon-sc0000007-1575043694:1146533..1146645TCONS_00001233-exon-sc0000007-1575043694:1146533..1146645Clytia hemisphaericaexon
TCONS_00001233-exon-sc0000007-1575043694:1146360..1146399TCONS_00001233-exon-sc0000007-1575043694:1146360..1146399Clytia hemisphaericaexon
TCONS_00001233-exon-sc0000007-1575043694:1146129..1146197TCONS_00001233-exon-sc0000007-1575043694:1146129..1146197Clytia hemisphaericaexon
TCONS_00001233-exon-sc0000007-1575043694:1144144..1144223TCONS_00001233-exon-sc0000007-1575043694:1144144..1144223Clytia hemisphaericaexon
TCONS_00001233-exon-sc0000007-1575043694:1143780..1143867TCONS_00001233-exon-sc0000007-1575043694:1143780..1143867Clytia hemisphaericaexon
TCONS_00001233-exon-sc0000007-1575043694:1143435..1143537TCONS_00001233-exon-sc0000007-1575043694:1143435..1143537Clytia hemisphaericaexon
TCONS_00001233-exon-sc0000007-1575043694:1143110..1143342TCONS_00001233-exon-sc0000007-1575043694:1143110..1143342Clytia hemisphaericaexon
TCONS_00001233-exon-sc0000007-1575043694:1142813..1142908TCONS_00001233-exon-sc0000007-1575043694:1142813..1142908Clytia hemisphaericaexon
TCONS_00001233-exon-sc0000007-1575043694:1140241..1140303TCONS_00001233-exon-sc0000007-1575043694:1140241..1140303Clytia hemisphaericaexon
TCONS_00001233-exon-sc0000007-1575043694:1140002..1140100TCONS_00001233-exon-sc0000007-1575043694:1140002..1140100Clytia hemisphaericaexon
TCONS_00001233-exon-sc0000007-1575043694:1139822..1139875TCONS_00001233-exon-sc0000007-1575043694:1139822..1139875Clytia hemisphaericaexon
TCONS_00001233-exon-sc0000007-1575043694:1139532..1139635TCONS_00001233-exon-sc0000007-1575043694:1139532..1139635Clytia hemisphaericaexon
TCONS_00001233-exon-sc0000007-1575043694:1139169..1139254TCONS_00001233-exon-sc0000007-1575043694:1139169..1139254Clytia hemisphaericaexon
TCONS_00001233-exon-sc0000007-1575043694:1138935..1138999TCONS_00001233-exon-sc0000007-1575043694:1138935..1138999Clytia hemisphaericaexon
TCONS_00001233-exon-sc0000007-1575043694:1138765..1138812TCONS_00001233-exon-sc0000007-1575043694:1138765..1138812Clytia hemisphaericaexon
TCONS_00001233-exon-sc0000007-1575043694:1138480..1138647TCONS_00001233-exon-sc0000007-1575043694:1138480..1138647Clytia hemisphaericaexon
TCONS_00001233-exon-sc0000007-1575043694:1137666..1137802TCONS_00001233-exon-sc0000007-1575043694:1137666..1137802Clytia hemisphaericaexon
TCONS_00001233-exon-sc0000007-1575043694:1137340..1137447TCONS_00001233-exon-sc0000007-1575043694:1137340..1137447Clytia hemisphaericaexon
TCONS_00001233-exon-sc0000007-1575043694:1136849..1137209TCONS_00001233-exon-sc0000007-1575043694:1136849..1137209Clytia hemisphaericaexon
TCONS_00001233-exon-sc0000007-1510915933:1147551..1147709TCONS_00001233-exon-sc0000007-1510915933:1147551..1147709Clytia hemisphaericaexon
TCONS_00001233-exon-sc0000007-1510915933:1147213..1147356TCONS_00001233-exon-sc0000007-1510915933:1147213..1147356Clytia hemisphaericaexon
TCONS_00001233-exon-sc0000007-1510915933:1146533..1146645TCONS_00001233-exon-sc0000007-1510915933:1146533..1146645Clytia hemisphaericaexon
TCONS_00001233-exon-sc0000007-1510915933:1146360..1146399TCONS_00001233-exon-sc0000007-1510915933:1146360..1146399Clytia hemisphaericaexon
TCONS_00001233-exon-sc0000007-1510915933:1146129..1146197TCONS_00001233-exon-sc0000007-1510915933:1146129..1146197Clytia hemisphaericaexon
TCONS_00001233-exon-sc0000007-1510915933:1144144..1144223TCONS_00001233-exon-sc0000007-1510915933:1144144..1144223Clytia hemisphaericaexon
TCONS_00001233-exon-sc0000007-1510915933:1143780..1143867TCONS_00001233-exon-sc0000007-1510915933:1143780..1143867Clytia hemisphaericaexon
TCONS_00001233-exon-sc0000007-1510915933:1143435..1143537TCONS_00001233-exon-sc0000007-1510915933:1143435..1143537Clytia hemisphaericaexon
TCONS_00001233-exon-sc0000007-1510915933:1143110..1143342TCONS_00001233-exon-sc0000007-1510915933:1143110..1143342Clytia hemisphaericaexon
TCONS_00001233-exon-sc0000007-1510915933:1142813..1142908TCONS_00001233-exon-sc0000007-1510915933:1142813..1142908Clytia hemisphaericaexon
TCONS_00001233-exon-sc0000007-1510915933:1140241..1140303TCONS_00001233-exon-sc0000007-1510915933:1140241..1140303Clytia hemisphaericaexon
TCONS_00001233-exon-sc0000007-1510915933:1140002..1140100TCONS_00001233-exon-sc0000007-1510915933:1140002..1140100Clytia hemisphaericaexon
TCONS_00001233-exon-sc0000007-1510915933:1139822..1139875TCONS_00001233-exon-sc0000007-1510915933:1139822..1139875Clytia hemisphaericaexon
TCONS_00001233-exon-sc0000007-1510915933:1139532..1139635TCONS_00001233-exon-sc0000007-1510915933:1139532..1139635Clytia hemisphaericaexon
TCONS_00001233-exon-sc0000007-1510915933:1139169..1139254TCONS_00001233-exon-sc0000007-1510915933:1139169..1139254Clytia hemisphaericaexon
TCONS_00001233-exon-sc0000007-1510915933:1138935..1138999TCONS_00001233-exon-sc0000007-1510915933:1138935..1138999Clytia hemisphaericaexon
TCONS_00001233-exon-sc0000007-1510915933:1138765..1138812TCONS_00001233-exon-sc0000007-1510915933:1138765..1138812Clytia hemisphaericaexon
TCONS_00001233-exon-sc0000007-1510915933:1138480..1138647TCONS_00001233-exon-sc0000007-1510915933:1138480..1138647Clytia hemisphaericaexon
TCONS_00001233-exon-sc0000007-1510915933:1137666..1137802TCONS_00001233-exon-sc0000007-1510915933:1137666..1137802Clytia hemisphaericaexon
TCONS_00001233-exon-sc0000007-1510915933:1137340..1137447TCONS_00001233-exon-sc0000007-1510915933:1137340..1137447Clytia hemisphaericaexon
TCONS_00001233-exon-sc0000007-1510915933:1136849..1137209TCONS_00001233-exon-sc0000007-1510915933:1136849..1137209Clytia hemisphaericaexon
TCONS_00001233-exon-sc0000007-1491911889:1147551..1147709TCONS_00001233-exon-sc0000007-1491911889:1147551..1147709Clytia hemisphaericaexon
TCONS_00001233-exon-sc0000007-1491911889:1147213..1147356TCONS_00001233-exon-sc0000007-1491911889:1147213..1147356Clytia hemisphaericaexon
TCONS_00001233-exon-sc0000007-1491911889:1146533..1146645TCONS_00001233-exon-sc0000007-1491911889:1146533..1146645Clytia hemisphaericaexon
TCONS_00001233-exon-sc0000007-1491911889:1146360..1146399TCONS_00001233-exon-sc0000007-1491911889:1146360..1146399Clytia hemisphaericaexon
TCONS_00001233-exon-sc0000007-1491911889:1146129..1146197TCONS_00001233-exon-sc0000007-1491911889:1146129..1146197Clytia hemisphaericaexon
TCONS_00001233-exon-sc0000007-1491911889:1144144..1144223TCONS_00001233-exon-sc0000007-1491911889:1144144..1144223Clytia hemisphaericaexon
TCONS_00001233-exon-sc0000007-1491911889:1143780..1143867TCONS_00001233-exon-sc0000007-1491911889:1143780..1143867Clytia hemisphaericaexon
TCONS_00001233-exon-sc0000007-1491911889:1143435..1143537TCONS_00001233-exon-sc0000007-1491911889:1143435..1143537Clytia hemisphaericaexon
TCONS_00001233-exon-sc0000007-1491911889:1143110..1143342TCONS_00001233-exon-sc0000007-1491911889:1143110..1143342Clytia hemisphaericaexon
TCONS_00001233-exon-sc0000007-1491911889:1142813..1142908TCONS_00001233-exon-sc0000007-1491911889:1142813..1142908Clytia hemisphaericaexon
TCONS_00001233-exon-sc0000007-1491911889:1140241..1140303TCONS_00001233-exon-sc0000007-1491911889:1140241..1140303Clytia hemisphaericaexon
TCONS_00001233-exon-sc0000007-1491911889:1140002..1140100TCONS_00001233-exon-sc0000007-1491911889:1140002..1140100Clytia hemisphaericaexon
TCONS_00001233-exon-sc0000007-1491911889:1139822..1139875TCONS_00001233-exon-sc0000007-1491911889:1139822..1139875Clytia hemisphaericaexon
TCONS_00001233-exon-sc0000007-1491911889:1139532..1139635TCONS_00001233-exon-sc0000007-1491911889:1139532..1139635Clytia hemisphaericaexon
TCONS_00001233-exon-sc0000007-1491911889:1139169..1139254TCONS_00001233-exon-sc0000007-1491911889:1139169..1139254Clytia hemisphaericaexon
TCONS_00001233-exon-sc0000007-1491911889:1138935..1138999TCONS_00001233-exon-sc0000007-1491911889:1138935..1138999Clytia hemisphaericaexon
TCONS_00001233-exon-sc0000007-1491911889:1138765..1138812TCONS_00001233-exon-sc0000007-1491911889:1138765..1138812Clytia hemisphaericaexon
TCONS_00001233-exon-sc0000007-1491911889:1138480..1138647TCONS_00001233-exon-sc0000007-1491911889:1138480..1138647Clytia hemisphaericaexon
TCONS_00001233-exon-sc0000007-1491911889:1137666..1137802TCONS_00001233-exon-sc0000007-1491911889:1137666..1137802Clytia hemisphaericaexon
TCONS_00001233-exon-sc0000007-1491911889:1137340..1137447TCONS_00001233-exon-sc0000007-1491911889:1137340..1137447Clytia hemisphaericaexon
TCONS_00001233-exon-sc0000007-1491911889:1136849..1137209TCONS_00001233-exon-sc0000007-1491911889:1136849..1137209Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000007supercontigsc0000007:1136849..1147709 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.275559 2.12938 3.91338 1.67019 3.16211 1.14872 2.49225 4.36892 0.165598 0.48207 0.39753 0.200602 0.151838 1.61228 0.018839 0.0607035 0.297863 0.765425 0.435624 0.0981391 0.290365 0 1.44117 0.737157 12.3791 7.7624 2.63777 0.700091 0 0.390461
Blast
BLAST of TCONS_00001233 vs. Swiss-Prot (Human)
Match: IF172 (Intraflagellar transport protein 172 homolog OS=Homo sapiens GN=IFT172 PE=1 SV=2)

HSP 1 Score: 1090.1 bits (2818), Expect = 0.000e+0
Identity = 510/761 (67.02%), Postives = 636/761 (83.57%), Query Frame = 1
Query:  121 MQLKHLKTTLAPQDGAAKITAMAWAPNNTKMAIVSTDRVVVLFDEHGEKRDKFGTKPGDAKTGKKGYQVKGLAFSPDSTKIAVGQTDNIVFVYKIGDEWGERKVICNKFLQQSAVTCLVWPPENQYIIFGLADGKVRMASLKTNKSQTVYGTGIHCISLCVSPDGKGVLSGHADGAIVRYMFEDTGTGLTQGQVVKHGCPPYALCWGS-SIIAAGCDKRIVAYGKEGRVLQNFDYSKDDEEKEFTVAIASPSGQSVVVGSYDRLRVFNWSPRRGAWEESKPKEINNLYTISSLSWKRDGSRLCAGTLCGGVELFDCCLRRSIFKNKFEMTYVGLSQVIVKNLASGARVVLKSHYGYEIDEVKIMGKDRFLVGHTSETLLVGDLNENKLSELPWHNSGGNEKFFFENETVCMVFNAGELSLIEYGQNEVLATVRTEFMNPHLISVRLNERKLKDQEDNKKLGYLIDLKTICVMDLMSGMVVANISHDVKIDWLEMNETGXXXXXXXXXXXXXXADIQSETKTTISTYCSYVQWVPLSDVVVAQSRSDLCVWYNIESPERVTIVPIKGDITDLEKIEGKTNVIVQEGVQSINYTLDEGLIEFGTAMEDGDYARAVSFLEGLEMSPETEAMWKTLSKVAMENKELFIAERCFAALGDVSKARYLRGINDLIDELNPSY-GDPMYHPTIRAKLAIFEKQFKLAESIYLEQGQVDEAMEMYQEVHKWDESLAIAEAKRHPELENLRSYYLQYLMKSGQEEKAGEVK 2397
            M LKHL+T L+PQDGAAK+T MAW+ NN K A+ + DRVV+L+DEHGE+RDKF TKP D K G+K Y VKG+AFSPDSTKIA+GQTDNI++VYKIG++WG++KVICNKF+Q SAVTCL WP E   I+FGLA+GKVR+A+ KTNKS T+YGT  + +SL  +  GKG+LSGHADG IVRY F+D G+G +QG++V H CPPYAL W + SI+AAGCD++IVAYGKEG +LQ FDYS+D +E+EFT A++SP GQSVV+GSYDRLRVFNW PRR  WEE+KPKEI NLYTI++L+WKRDGSRLC GTLCGGVE FDCCLRRSI+KNKFE+TYVG SQVIVKNL+SG RVVLKSHYGYE++EVKI+GK+R+LV HTSETLL+GDLN N+LSE+ W  SGGNEK+FFENE VCM+FNAGEL+L+EYG N+ L +VRTEFMNPHLISVR+NER  +  EDNKKL YLID+KTI ++DL+ G  +  +SH+ ++DWLE+NETG KLLFRD+KLRL L DI+S +KT I  +CSY+QWVP SDV+VAQ+R+ LCVWYNIE+PERVT+  I+GD+  LE+  GKT V+V EGV ++ YTLDEGLIEFGTA++DG+Y RA +FLE LEM+PETEAMWKTLSK+A+E ++L IAERCF+ALG V+KAR+L   N++ D+++  Y G+      +RA+LA+ EK +KLAE I+LEQ  V+EAM MYQE+H+WDE +A+AEAK HP LE LR  Y Q+LM + QEE+AGE++
Sbjct:    1 MHLKHLRTLLSPQDGAAKVTCMAWSQNNAKFAVCTVDRVVLLYDEHGERRDKFSTKPADMKYGRKSYMVKGMAFSPDSTKIAIGQTDNIIYVYKIGEDWGDKKVICNKFIQTSAVTCLQWPAE-YIIVFGLAEGKVRLANTKTNKSSTIYGTESYVVSLTTNCSGKGILSGHADGTIVRYFFDDEGSGESQGKLVNHPCPPYALAWATNSIVAAGCDRKIVAYGKEGHMLQTFDYSRDPQEREFTTAVSSPGGQSVVLGSYDRLRVFNWIPRRSIWEEAKPKEITNLYTITALAWKRDGSRLCVGTLCGGVEQFDCCLRRSIYKNKFELTYVGPSQVIVKNLSSGTRVVLKSHYGYEVEEVKILGKERYLVAHTSETLLLGDLNTNRLSEIAWQGSGGNEKYFFENENVCMIFNAGELTLVEYGNNDTLGSVRTEFMNPHLISVRINERCQRGTEDNKKLAYLIDIKTIAIVDLIGGYNIGTVSHESRVDWLELNETGHKLLFRDRKLRLHLYDIESCSKTMILNFCSYMQWVPGSDVLVAQNRNSLCVWYNIEAPERVTMFTIRGDVIGLERGGGKTEVMVMEGVTTVAYTLDEGLIEFGTAIDDGNYIRATAFLETLEMTPETEAMWKTLSKLALEARQLHIAERCFSALGQVAKARFLHETNEIADQVSREYGGEGTDFYQVRARLAMLEKNYKLAEMIFLEQNAVEEAMGMYQELHRWDECIAVAEAKGHPALEKLRRSYYQWLMDTQQEERAGELQ 760          
The following BLAST results are available for this feature:
BLAST of TCONS_00001233 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
IF1720.000e+067.02Intraflagellar transport protein 172 homolog OS=Ho... [more]
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