TCONS_00001233 (transcript) - C. hemisphaerica

Overview
NameTCONS_00001233
Unique NameTCONS_00001233
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2418

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00001233 ID=TCONS_00001233|Name=TCONS_00001233|organism=Clytia hemisphaerica|type=transcript|length=2418bp
AAGTGATGTTCCCATACATTCTGATTATACTAAATTTACTAATTGTATCA
CGCTGTCCAAGCAGCTGATTCTTTTAtcatttgtatttattttatttaga
cataaaaaataaaaaacaatatgCAGCTTAAACACTTAAAAACTACACTG
GCTCCCCAGGATGGAGCTGCTAAGATCACAGCAATGGCATGGGCTCCTAA
CAATACCAAAATGGCAATAGTATCAACTGATCGtgtagttgttctttttg
atgAACATGGAGAAAAAAGGGACAAATTTGGAACAAAACCTGGTGATGCT
AAAACTGGGAAGAAAGGTTACCAAGTGAAAGGACTAGCATTTTCTCCTGA
TTCCACCAAGATAGCTGTTGGACAAACAGATAACATTGTTTTTGTATACA
AGATTGGTGACGAATGgGGCGAAAGAAAAGTTATATGCAACAAGTTTCTC
CAACAGAGTGCTGTTACATGTTTGGTTTGGCCCCCAGAAAATCAATATAT
TATTTTTGGTCTTGCTGATGGAAAGgTCAGGATGGCAAGTctaaaaacca
acaaatcacaAACTGTCTATGGAACTGGTATCCATTGTATATCTTTGTGT
GTCAGTCCTGATGGGAAAGGTGTTTTGTCAGGGCATGCAGATGGAGCCAT
TGTCAGATATATGTTTGAAGATACTGGGACAGGTTTGACCCAGGGGCAAG
TTGTGAAACATGGCTGTCCACCGTATGCCTTGTGTTGGGGCTCATCAATC
ATTGCAGCAGGATGTGATAAAAGAATTGTTGCATATGGAAAAGAAGGGCG
GGTATTACAAAACTTCGACTATTCAAAAGATGATGAGGAAAAAGAGTTCA
CAGTTGCAATAGCAAGTCCAAGTGGTCAGTCAGTGGTGGTTGGAAGTTAT
GATAGATTACGTGTTTTCAATTGGAGTCCCCGAAGAGGAGCCTGGGAAGA
ATCTAAACCAAAAGAGATCAATAATTTATACACCATCAGCTCACTTTCTT
GGAAAAGAGATGGTTCAAGGCTTTGTGCTGGCACACTCTGTGGTGGAGTT
GAACTGTTTGATTGCTGTTTGAGAAGATCTATTTTCAAGAATAAATTTGA
AATGACTTATGTTGGGTTGAGCCAGGTTATTGTCAAAAATTTGGCATCAG
GAGCCAGAGTTGTTTTAAAATCACATTATGGATACGAGATTGATGAAGTG
AAAATAATGGGGAAGGACAGATTTCTTGTTGGACACACTTCAGAAACATT
GCTTGTGGGAGATCTAAACGAAAACAAGCTTAGTGAGCTTCCATGGCATA
ATTCAGGTGGAAATGAGAAGttcttctttgaaaatgaaacaGTTTGTATG
GTATTCAATGCAGGAGAATTATCTTTGATCGAGTATGGTCAAAATGAAGT
GTTAGCTACAGTCAGAACAGAATTCATGAACCCTCATCTTATAAGCGTAC
GTTTGAATGAAAGAAAGCTGAAAGATCAAGAAGACAATAAAAAATTGGGT
TATTTGATTGACCTGAAAACTATATGTGTCAtgGACTTGATGTCAGGGAT
GGTTGTAGCCAATATTTCACATGATgtcaaaattgactggttagaGATGA
ATGAGACTGGAAAGAAGCTCTTATTCCGAGACAAAAAACTGAGGTTATTA
TTGGCAGATATTCAAAGTGAAACAAAAACCACTATTTCTACATATTGCTC
TTATGTGCAATGGGTGCCTTTGAGTGATGTTGTGGTAGCTCAAAGCAGAA
GCGATCTTTGTGTTTGGTACAATATTGAATCACCTGAACGAGTGACTATC
GTTCCCATCAAAGGTGACATCACAGACCTTGAGAAGATCGAGGGTAAAAC
AAACGTGATCGTACAAGAAGGTGTACAATCGATCAATTACACATTAGACG
AAGGGCTAATCGAGTTTGGAACTGCTATGGAAGATGGTGATTATGCTAGG
GCTGTTTCGTTTCTGGAAGGATTGGAGATGTCACCTGAAACAGAAGCTAT
GTGGAAGACTCTCAGCAAGGTTGCCATGGAGAATAAAGAGCTTTTCATCG
CCGAAAGGTGTTTTGCTGCACTAGGAGATGTTTCTAAAGCTCGCTATTTA
CGTGGAATCAACGACTTGATCGATGAACTGAACCCAAGTTATGGAGATCC
TATGTATCATCCGACTATTCGCGCCAAACTGGCCATTTTTGAGAAACAAT
TCAAACTTGCAGAAAGTATTTACTTGGAACAAGGACAAGTTGATGAAGCG
ATGGAGATGTACCAAGAAGTTCACAAGTGGGATGAATCTTTGGCCATCGC
CGAAGCCAAAAGACATCCAGAACTAGAGAACCTTAGAAGCTATTACTTGC
AATATTTGATGAAGTCAGGCCAAGAAGAAAAAGCTGGAGAGGTTAAAACC
TTGAATTTAGTTAACAGA
Run BLAST on NCBI

transcript from alignment at sc0000007:1136849..1147709-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00001233 ID=TCONS_00001233|Name=TCONS_00001233|organism=Clytia hemisphaerica|type=transcript|length=10861bp|location=Sequence derived from alignment at sc0000007:1136849..1147709- (Clytia hemisphaerica)
AAGTGATGTTCCCATACATTCTGATTATACTAAATTTACTAATTGTATCA
CGCTGTCCAAGCAGCTGATTCTTTTATCATTTGTATTTATTTTATTTAGA
CATAAAAAATAAAAAACAATATGCAGCTTAAACACTTAAAAACTACACTG
GCTCCCCAGGTATGAAAACTTTCTTTTTTACAGTGTTGTAACTTTTCTCT
TCATATAAAAAACTATTTAGGAATGAAATATTAAAGAACTCAAAATATAA
CCATTGCTGAACTTTATCTTTTTCATTTCACCCAGAGGCAAGACTGTTTA
ATCCTTTCTAGTATGATTTATTGTTATACCTTTAAATTGTAATTTTTATG
AAGGATGGAGCTGCTAAGATCACAGCAATGGCATGGGCTCCTAACAATAC
CAAAATGGCAATAGTATCAACTGATCGTGTAGTTGTTCTTTTTGATGAAC
ATGGAGAAAAAAGGGACAAATTTGGAACAAAACCTGGTGATGCTAAAGTA
AGCTCTATCTAAGTCAAAAAATCCCTTTGTGATAGAACAAATAAAAGTTA
TCACATGATATCGATTACAATATGGGATGTATTATATTAAGTTAAACTTT
TTCCTCATATTTTTGAGCCCGTATGCCAGGAAACTATCAAAAACTTTGAA
CAAGAAAAATATATCCAATATTGTGCGAGTAAGTTTGATAATTGGTTTAG
CATTAACTTGAAAAATACGACCAAACTTTTCTCTCTCCATTTGTGTCTTT
TTCTATGTTTTTTTTTCTCTTCATGCATTTTGTTCTTCCTCTATTTTGAT
GAAATTAACACCAAAACATTTATAAAAAATCCAAAGGTCATTAAAATGTT
AAAAACATTCTTTTGTATAACTCTTCGGATGATTTGCTGCTCTATCAGCC
AATCAGATTGCTCATATTTTTCATGTTGATGAAAAGATTAAATTATTTTA
GTAGTCACATAAGCATAAGCCTTGGATGAAATAATGAATCTTCTTCATTT
ATTGATTTCAAATCTTTCTTACTATCCACACCAAAGTTACCTTTCTAAAT
GATTGTTCTTTTAGACTGGGAAGAAAGGTTACCAAGTGAAAGGACTAGCA
TTTTCTCCTGATTCCACCAAGATAGCTGTTGGACAAACAGATAACATTGT
TTTTGTATACAAGATTGGTGACGAATGGTAAGACTAAGAACATTGATCTT
TCTAAAAACTGAAACATCTACAGTCAGATATTATTTACTTATATTTGAAG
ATCGAACATAATATGAAAATGTTATTTATATATATTAATTAATTTTTGAT
TTTATTTTAGGGGCGAAAGAAAAGTTATATGCAACAAGTTTCTCCAACAG
GTAAAGTATCTTTTTAAATTGATTATTATTTCATCACAAGAGAAATTTTT
TTAACATTTGATACCATAGTATTGTATTATCCTATACTGTGTTAAATGAA
TGATTTTACTTTACACATCTGCTATAATAATATAATTTAATGAGGATCAA
TTTTTACATTAGAGTGCTGTTACATGTTTGGTTTGGCCCCCAGAAAATCA
ATATATTATTTTTGGTCTTGCTGATGGAAAGGTTTGTGACTTTTGACATT
TTGACTTTTATGATGGATGATATCTCTTTTGGGATTCAAATTTTATAAAT
TGATAAAGTAAAATAGTTGTCTGTTTGACCATACCTCCTAAATCTATAGG
GCTGACAAAATGAATGGCAAAAAAAGTGTTTTTAAAACCAGCCTAATGTC
ACCCCATAAGTGACCATTTCTTAGCTGAACAGTTAATTTATTTTTTTGAA
AACAAATAATTAATTTTACTATACTCATGAATTTTAAAAATCAAAAGGTG
ATCCTAAAAGTCTCAGCTTTCAAAGATGGTTACATTTAAGAGATGGTATT
GGTAGGAAAGGGAGATCTACTTTTTAACCTGGAAATATATATTGACGATA
TAAAGCATACAAACACCTAAAATTTTAGATCACACTTCAAATGATTGAGT
TTGAGAATGATTATTTTCTTCATCTTTCTGTAATGTTTTAAAATTTCCAT
TTTTTTTTAGGTCAGGATGGCAAGTCTAAAAACCAACAAATCACAAACTG
TCTATGGAACTGGTATCCATTGTATATCTTTGTGTGTCAGGTTGGCATTC
TGTTTTAATTACATAAATGATTTTCAAACTATAAAATGAAAGCAATATTA
CTATTATGTTAAGTCTTTGAAGCTTGTAAATGAAGACATAATTGAGTACA
GCTTTCAAGAAACTACTTTAACAATTCATATTTAAGCATTTTCACAACAG
ATAATAAACTAAAAATTTTTTTGAAAAAGTTTCATTTAATATAAACATTT
TCTTGACTGGACAAATCCAATAACTGTTTCAGGTTAAATTATCTTTGCCA
TCTGTTCTCTTTTTAGTCCTGATGGGAAAGGTGTTTTGTCAGGGCATGCA
GATGGAGCCATTGTCAGATATATGTTTGAAGATACTGGGACAGGTTTGAC
CCAGGTATTTTACATATTAAATGTTAAAACATTTAAAGTAGACAAACTAA
ACTAATATTAGGTATATTTCTTTTTGAGAAGTCCGACTGTTACTAGAAGA
GTCAATTGCACTTCAGACAAACAATCATTCCAAAGAATAATTTGCAAATT
TCTTTTTTTTTGAAGTGCATTACACAAAGAATAATACAAAGAATTATATG
CTATCCTAATATTCAAATCTCAAGATTGGTTCGATTTTTTCCATAGGGGC
AAGTTGTGAAACATGGCTGTCCACCGTATGCCTTGTGTTGGGGCNTACAA
GAGAAAATTTTTTAACATTTGATACCACAGTATTGTATTATCCTATACTG
TGTTAAATGAATGATTTTACTTTACACATCTGCTATAATAATATAATTTA
ATGAGAATCAATTTTTACATTAGAGTGCTGTTACATGTTTGGTTTGGCCC
CCAGAAAATCAATATATTATTTTTGGTCTTGCTGATGGAAAGGTTTGTGA
CTTATGACATTTTGACTTTTATTATATCATGATATAATGATGGATGATAT
CTCTTTTAGGATTCAAATTTTATAAATTGATGAAGTAAAATAGTTGTCTG
TTTGACCATACCTCCTAAATCTATAGGGCTGACAAAATGAATTGCAAAAA
AAGTGTTTTTAAAACCAGCCTAATGTCACCCCATAAGTGGCCATTTCTTA
GCTGAACAGTTAATTTATTTTTTTGAAAACATATAATTAATTTTACTATA
CTCGTGAATTTTAAATATCAAAAGGTGGTCCTAAAAGTCTCAGCTTTCAA
GATGGTTACATTTAAGAGATGGTATTGTTAGGAAAGGGAGATCTACTTTT
TAACCTGGAAATATATATTGACGATATAAAGCATACAAACACCTAAAATT
TTAGATCACACTTCAAATGATTGAGTTTGAGAATGATTATTTTCTTCATC
TTTCTGTAATGTTTTAAAATTTCCATTTTTTTTTAGGTCAGGATGGCAAG
TCTAAAAACCAACAAATCACAAACTGTCTATGGAACTGGTATCCATTGTA
TATCTTTGTGTGTCAGGTTGGCATTCTGTTTTAATTACATAAATGATTTT
CAAACTATAAAATGAAAGCAATATTACTATTATGTTAAGTCTTTGAAGCT
TGTAAATGAAGACATAATTGAGTACAGCTTTCAAGAAACTACTTTAACAA
TTCATATTTAAGCATTTTCACAACAGATAATAAACTAAAAATTTTTTTGA
AAAAGTTTCATTTAATATAAACATTTTCTTGACTGGACAAATCCAATAAC
TGTTTCAGGTTAAATTATCTTTGCCATCTGTTCTCTTTTTAGTCCTGATG
GGAAAGGTGTTTTGTCAGGGCATGCAGATGGAGCCATTGTCAGATATATG
TTTGAAGATACTGGGACAGGTTTGACCCAGGTATTTTACATATTAAATGT
TAAAACATTTAAAGTAGACAAACTAAACTAATATTAGGTATATTTCTTTT
TGAGAAGTCCGACTGTTACTAGAAGAGTCAATTGCACTTCAGACAAACAA
TCATTCCAAAGAATAATTTGCAAATTTCTTTTTTTTTGAAGTGCATTACA
CAAAGAATAATACAAAGAATTATATGCTATCCTAATATTCAAATCTCAAG
ATTGGTTCGATTTTTTCCATAGGGGCAAGTTGTGAAACATGGCTGTCCAC
CGTATGCCTTGTGTTGGGGCTCATCAATCATTGCAGCAGGATGTGATAAA
AGAATTGTTGCATATGGAAAAGAAGGTATTGTTTTTTGAGCTTATGTTTC
ACGAGAAAATCATTTTTATTTAACAAATGATTAATCCTAATATTTCATTT
CCCTAAACTCTCTTTAGGGCGGGTATTACAAAACTTCGACTATTCAAAAG
ATGATGAGGAAAAAGAGTTCACAGTTGCAATAGCAAGTCCAAGTGGTCAG
TCAGTGGTGGTTGGAAGTTATGATAGATTACGTGTTTTCAATTGGAGTCC
CCGAAGAGGAGCCTGGGAAGAATCTAAACCAAAAGAGATCAATAATTTAT
ACACCATCAGCTCACTTTCTTGGAAAAGAGATGGTTCAAGGCTTTGTGCT
GTAAGTTAGATAATTCCCTCTTATTTTTTGTCCTGCTGGAATATAGGTTT
TAATACATAAAGACAGTTTGACTTACATATGGATGAAAAGTTTCAATTAG
TATTCTACATGCAAATATAAAGAATTTTTTTAAATGGTATTTACAAATAT
ATCATAATACAGTAGCTAAATCTTACTGAATAATATTATTTCTGACTTCA
GGGCACACTCTGTGGTGGAGTTGAACTGTTTGATTGCTGTTTGAGAAGAT
CTATTTTCAAGAATAAATTTGAAATGACTTATGTTGGGTTGAGCCAGGTA
AAATGAAGGATTTTTTGTTATACTTTTGAAGATATTAACCCTTCAACCCT
TTCAGACCCGGTACACACGATTTAAATCTGCCAAAATACCAAGTCCTGAC
CACTTGATTTAAAAGGGCATACACCGGATGCTGTTAGAAAGAGTACAAAA
ATATCTTTTCAATGGTACAAAAACCATTGCCTAAGTCTCAAGTTAAAACC
TTTTATGCCAATTTGAAAATTTGGAAAAAATGTTGCGCGCTGGAAAGGTT
AAGAAAAAATTAAATAAGAATCTGTATTTTGTAAAAAATATCTAAAAAAT
TGTCCAGAGGAAAACCAATTTTCTCTGTCTGTGCGAGAGTGTGGAACATA
TAACATAGTTGAAAATAACACATCATCTTTCTTATGAAAATTTCTGCCAA
CTGGCCTTTTTCAACATAAAAATGAATTTAATGTTCTTCATTCGCCGCTG
TGAGGAGACATTCTTAATGTTAGCAAAGGAAAGCTTACGTTCTGCTCTCT
AAAGAGCAAATCATCTCGTTTCGGTTCTCTAGCCTTCAGAATTTCTCGAC
TGACTAGTTGGTCACTATCCTTGTTTTTTTTTAGCCACAGTGCTAGCTGG
TTGCAATTGAGGTCAAAAAAAGAAATGTTCTGAACAGATGCGATTCAAGC
GCAGGCCCTGGCCATAAGGAATGGCCTTTTTTGAATGAAATGCACAATTA
TAAAAAAATATTTAGTTATTTTCACTAACATTACAAATACAAAGAAACTT
TGTTATTATTAATGCTAACTGTTGATTTCTAGGTTATTGTCAAAAATTTG
GCATCAGGAGCCAGAGTTGTTTTAAAATCACATTATGGATACGAGGTTTG
TATATAAATAATTTTTATAAGTAGAAAATCTATCATCAATATTTCTGCCT
AATCAACTTTTTCTCAAGAATCTGTAATATCATATTTTAAAGTTATATTT
CTTGGCCCATTATTATCCCTTGCTGATGTTTTTAGATTGATGAAGTGAAA
ATAATGGGGAAGGACNTTGTCCACCGTATGCCTTGTGTTGGGGCTCATCA
ATCATTGCAGCAGGATGTGATAAAAGAATTGTTGCATATGGAAAAGAAGG
TTTTGTTTTTTGAGCTTATGTTTCACGAGAAAATCATTTTTATTTAACAA
ATGATTAATCCTAATATTTCATTTCCCTAAACTCTCTTTAGGGCGGGTAT
TACAAAACTTCGACTATTCAAAAGATGATGAGGAAAAAGAGTTCACAGTT
GCAATAGCAAGTCCAAGTGGTCAGTCAGTGGTGGTTGGAAGTTATGATAG
ATTACGTGTTTTCAATTGGAGTCCCCGAAGAGGAGCCTGGGAAGAATCTA
AACCAAAAGAGATCAATAATTTATACACCATCAGCTCACTTTCTTGGAAA
AGAGATGGTTCAAGGCTTTGTGCTGTAAGTTAGATAATTCCCTCTTATTT
TTTGTCCTGCTGGAATATAGGTTTTAATACATAAAGACAGTTTGACTTAC
ATATGGATGAAAAGTTTCAATTACTATTCTACATGCAAATATAAAGAATT
TTTTTAAATGGTATTTACAAATATATCATAATACAGTAGCTACATCTTAC
TGAATAATATTATTTCTGACTTCAGGGCACACTCTGTGGTGGAGTTGAAC
TGTTTGATTGCTGTTTGAGAAGATCTATTTTCAAGAATAAATTTGAAATG
ACTTATGTTGGGTTGAGCCAGGTAAAATGAAGGATTTTTTGTTATACTTT
TGAAGATATTAACCCTTCAACCCTTTCAGACCCGGTACACACGATTTAAA
TCTGCCAAAATACCAAGTCCTGACCACTTGATTTAAAAGGGCATACACCG
GATGCTGTTAGAAAGAGTACAAAAATATCTTTTCAATGGTACAAAAACCA
TTGCCTAACTCTCAAGTTAAAACCTTTTATGCCAATTTGAAAATTTGGAA
AAAATGTTGCGCGCTGGAAAGGTTAAGAAAAAATTAAATAAGAATCTGTA
TTTTGTAAAAAATATCTAAAAAATTGTCCAGAGGAAAACCAATTTTCTCT
GTCTGTGCGAGAGTGTGGAACATATAACATAGTTGAAAATAACACATCAT
CTTTCTTATGAAAATTTCTGCCAACTGGCCTTTTTCAACATAAAAATGAA
TTTAATGTTCTTCATTCGCCGCTGTGAGGAGACATTCTTAATGTTAGCAA
AGGAAAGCTTACGTTCTGCTCTCTAAAGAGCAAATCATCTCGTTTCGGTT
CTCTAGCCTTCAGAATTTCTCGACTGACTAGTTGGTCACTATCCTTGTTT
TTTTTTAGCCACAGTGCTAGCTGGTTGCAATTGAGGTCAAAAAAAGAAAT
GTTCTGAACAGATGCGATTCAAGCGCAGGCCCTGGCCATAAGGAATGGCC
TTTTTTGAATGAAATGCACAATTATAAAAAAATATTTAGTTATTTTCACT
AACATTACAAATACAAAGAAACTTTGTTATTATTAATGCTAACTGTTGAT
TTCTAGGTTATTGTCAAAAATTTGGCATCAGGAGCCAGAGTTGTTTTAAA
ATCACATTATGGATACGAGGTTTGTATATAAATAATTTTTATAAGTAGAA
AATCTATCATCAATATTTCTGCCTAATCAACTTTTTCTCAAGAATCTGTA
ATATCATATTTTAAAGTTATATTTCTTGGCCCATTATTATCCCTTGCTGA
TGTTTTTAGATTGATGAAGTGAAAATAATGGGGAAGGACAGATTTCTTGT
TGGACACACTTCAGAAACATTGCTTGTGGGAGATCTAAACGAAAACAAGC
TTAGTGAGGTAAGTTCCTTCCTCAAGAACTATTTTTGAAATTAATATCAT
AAGATCTTTCAAGTGACATTATGGAACATAAAAAATAACAGAACTTGATT
TTGATAATTATACTGTTTTGTTTTTATGATTCAGCTTCCATGGCATAATT
CAGGTGGAAATGAGAAGTTCTTCTTTGAAAATGAAACAGTAAGTTTGTTT
AAAATTCAATACATTTTTCTTTTGGAAAAAGTAAAACAAAGAAAGTAGAT
TACTTCAAAACAATTTTAAATCTTTCAAAGGTTCCTTAGCTTGCCACTGC
TAAAATCATACCTTGTTAGCATTACGAGTTTCAGGACTTCTATGTGTTAC
TTTGTTATTGTTTTAATCAATTAGGTTTGTATGGTATTCAATGCAGGAGA
ATTATCTTTGATCGAGTATGGTCAAAATGAAGTGTTAGCTACAGTCAGAA
CAGAATTCATGAACCCTCATCTTATAAGGTAATGATTTTTCAAATGCAGA
TATGAAACGATTGTGAAATGTATTCTAGGGTTATGATATTTAGAATTTGA
TTTTTGAATAGTCTATTCCATTAAACAAATTTCTTTAGATATTTCAGAAT
AATTTACCCTGCTGCCTCACATTCCTGCCTTGGTATTTTTACCGGAAAGA
ATTGAAACTCCATTCTTTCTTACCAGCCATCCCTCTGTAAGAACTAGACT
GGACGCTAGTCAGTATGATTCTCAATAGCAGTATTTCTTGACTTAACTTT
TTCAGCGTACGTTTGAATGAAAGAAAGCTGAAAGATCAAGAAGACAATAA
AAAATTGGGTTATTTGATTGACCTGAAAACTATATGTGTCAGTAAGTAAA
CGTTTTGTAAAAAATCGACTATTTTGGCATTATTAGCAGCATTTCTCATT
TCTATCGGGTGAATACAGATTTGAAATATTTGGGCTATTATGCTAAGCTC
AGTTGTAAATTAGCCTTAGGATTTTAGTTTTTTTTTACTTTAAATTTCTT
TAATTTTCAGTGGACTTGATGTCAGGGATGGTTGTAGCCAATATTTCACA
TGATGTCAAAATTGACTGGTTAGAGGTACTCCACTCTCATCTCTTATTGT
CTCTAAGTTATGAATTTCCAAGATAATATATTTATATTTAGATGCAAATC
TCAAGAGTTTGAGTGGTTGACAAATCTTGAATTTTCTCTGTTTATAGATG
AATGAGACTGGAAAGAAGCTCTTATTCCGAGACAAAAAACTGAGGGTAAG
TAATTTAGATAATTTCCGATACTCTTCCTCAAATTAGGACAGTTGTTTTA
AAGTGTGAAGTGATTTCTGGTTTCAACTTCTAATTATAGTACACTTACCT
CTCAACTTTTAGTTATTATTGGCAGATATTCAAAGTGAAACAAAAACCAC
TATTTCTACATATTGCTCTTATGTGCAATGGGTGCCTTTGAGTGATGTTG
TGGTAGCTCAAAGCAGAAGCGATCTTTGTGTTTGGTACAATATTGAATCA
CCTGAACGAGTGACTATCGTTCCCATCAAAGTAAGAGACCATTTTGTTCA
TTTCCTCTCAAAGGCTTAACGGCGATCAAAAATAAACTATTTAAAAACTA
TTTTTTATGTCTTTTGATTCTTTCTAATGACTTGTAATAATGACTTGTAA
TTTGAGGGGTCGTTTGTTAAATTTGGTCAACTAGGTAAAAAGCTATGGCC
TAAATGCTAAAATATTACTTTTCAAAAAAGTAAAAAAAATGGCGAAAAAT
GAGGGTATTAAATCATCATAAAGATATCATAAAGAAATCTTTCTTTTATC
AATTTATTAACGATCGAAGTCTCTTCGTCCTCTTCGTGGCCAGTTTCCAA
GAAAGGTGGTCAACAATCGAGGAGATGTTGAGTGACCCCTAAGTTCGCCT
GAGCTTACAGTGTGTGATTTCTTTTTGTGGGGTTACACGAAACAAGAAAT
CTGGGAGCAACTCACAAATTTGCAATTCCAGACCCTTGATCAATGAAAGC
TTCAATCAAATATGAAGACTTGGCAAATCGATTTTATATTATTTTCTCAT
GATAAAAAATTACATTAATTGACTTTGTGACCCTTGTTTTACACGGTTTA
GCCTACGATCGAGGCACCCTTATTCTGGATTTGTTATTCGAATTTCAAAT
CAAAGTTGAAAAGACACTGGTTTGGAATGTTAAGTTAAACTTTCCTTGCA
TGTTTAGGGTGACATCACAGACCTTGAGAAGATCGAGGGTAAAACAAACG
TGATCGTACAAGAAGGTGTACAATCGATCAATTACACATTAGACGAAGGG
CTAATCGAGTTTGGAACTGCTATGGAAGATGGTGATTATGCTAGGTTTGT
CTTATTGGTTATTTTAATTAGATTTTAAGACATTGATCTTCTAATGCTGC
AGCAAATTTTTTAACATAAACAAACTTATTAAGATAAGGGTTATTTTTTA
TTGAGATTTTCTTCTCAAAATGCTTCAACTGAGAGATTTTACCTGTCGTC
TTTTCTTCGTTGTATTACTTTTTTTTGCTCAGAAATCTGATATAAAATTG
TATTTTGTTCAGGGCTGTTTCGTTTCTGGAAGGATTGGAGATGTCACCTG
AAACAGAAGCTATGTGGAAGACTCTCAGCAAGGTTGCCATGGAGAATAAA
GAGCTTTTCATCGCCGAAAGGTAAGACATAAATATGATCCAACAATCATG
ATTCAATGCATAGTCCGAAACATTTTTTCTACAAAGGCTCTTTTAAGAGG
ATTCTGTAATGGGGTTCTTAAACTTTTCAAAATATATTTTTGCTTTGTAG
GTGTTTTGCTGCACTAGGAGATGTTTCTAAAGCTCGCTATTTACGTGGAA
TCAACGACTTGATCGATGAACTGAACCCAAGTTATGGAGATCCTATGTAT
CATCCGACTATTCGCGCCAAACTGGCCATTTTTGAGAAACAATTCAAACT
TGCAGAAAGTATTTACTTGGAACAAGGACAAGTTGATGAAGCGATGGAGA
TGTACCAAGAAGTTCACAAGTGGGATGAATCTTTGGCCATCGCCGAAGCC
AAAAGACATCCAGAACTAGAGAACCTTAGAAGCTATTACTTGCAATATTT
GATGAAGTCAGGCCAAGAAGAAAAAGCTGGAGAGGTTAAAACCTTGAATT
TAGTTAACAGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000661XLOC_000661Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001233-exon-sc0000007-1575043694:1147551..1147709TCONS_00001233-exon-sc0000007-1575043694:1147551..1147709Clytia hemisphaericaexon
TCONS_00001233-exon-sc0000007-1575043694:1147213..1147356TCONS_00001233-exon-sc0000007-1575043694:1147213..1147356Clytia hemisphaericaexon
TCONS_00001233-exon-sc0000007-1575043694:1146533..1146645TCONS_00001233-exon-sc0000007-1575043694:1146533..1146645Clytia hemisphaericaexon
TCONS_00001233-exon-sc0000007-1575043694:1146360..1146399TCONS_00001233-exon-sc0000007-1575043694:1146360..1146399Clytia hemisphaericaexon
TCONS_00001233-exon-sc0000007-1575043694:1146129..1146197TCONS_00001233-exon-sc0000007-1575043694:1146129..1146197Clytia hemisphaericaexon
TCONS_00001233-exon-sc0000007-1575043694:1144144..1144223TCONS_00001233-exon-sc0000007-1575043694:1144144..1144223Clytia hemisphaericaexon
TCONS_00001233-exon-sc0000007-1575043694:1143780..1143867TCONS_00001233-exon-sc0000007-1575043694:1143780..1143867Clytia hemisphaericaexon
TCONS_00001233-exon-sc0000007-1575043694:1143435..1143537TCONS_00001233-exon-sc0000007-1575043694:1143435..1143537Clytia hemisphaericaexon
TCONS_00001233-exon-sc0000007-1575043694:1143110..1143342TCONS_00001233-exon-sc0000007-1575043694:1143110..1143342Clytia hemisphaericaexon
TCONS_00001233-exon-sc0000007-1575043694:1142813..1142908TCONS_00001233-exon-sc0000007-1575043694:1142813..1142908Clytia hemisphaericaexon
TCONS_00001233-exon-sc0000007-1575043694:1140241..1140303TCONS_00001233-exon-sc0000007-1575043694:1140241..1140303Clytia hemisphaericaexon
TCONS_00001233-exon-sc0000007-1575043694:1140002..1140100TCONS_00001233-exon-sc0000007-1575043694:1140002..1140100Clytia hemisphaericaexon
TCONS_00001233-exon-sc0000007-1575043694:1139822..1139875TCONS_00001233-exon-sc0000007-1575043694:1139822..1139875Clytia hemisphaericaexon
TCONS_00001233-exon-sc0000007-1575043694:1139532..1139635TCONS_00001233-exon-sc0000007-1575043694:1139532..1139635Clytia hemisphaericaexon
TCONS_00001233-exon-sc0000007-1575043694:1139169..1139254TCONS_00001233-exon-sc0000007-1575043694:1139169..1139254Clytia hemisphaericaexon
TCONS_00001233-exon-sc0000007-1575043694:1138935..1138999TCONS_00001233-exon-sc0000007-1575043694:1138935..1138999Clytia hemisphaericaexon
TCONS_00001233-exon-sc0000007-1575043694:1138765..1138812TCONS_00001233-exon-sc0000007-1575043694:1138765..1138812Clytia hemisphaericaexon
TCONS_00001233-exon-sc0000007-1575043694:1138480..1138647TCONS_00001233-exon-sc0000007-1575043694:1138480..1138647Clytia hemisphaericaexon
TCONS_00001233-exon-sc0000007-1575043694:1137666..1137802TCONS_00001233-exon-sc0000007-1575043694:1137666..1137802Clytia hemisphaericaexon
TCONS_00001233-exon-sc0000007-1575043694:1137340..1137447TCONS_00001233-exon-sc0000007-1575043694:1137340..1137447Clytia hemisphaericaexon
TCONS_00001233-exon-sc0000007-1575043694:1136849..1137209TCONS_00001233-exon-sc0000007-1575043694:1136849..1137209Clytia hemisphaericaexon
TCONS_00001233-exon-sc0000007-1510915933:1147551..1147709TCONS_00001233-exon-sc0000007-1510915933:1147551..1147709Clytia hemisphaericaexon
TCONS_00001233-exon-sc0000007-1510915933:1147213..1147356TCONS_00001233-exon-sc0000007-1510915933:1147213..1147356Clytia hemisphaericaexon
TCONS_00001233-exon-sc0000007-1510915933:1146533..1146645TCONS_00001233-exon-sc0000007-1510915933:1146533..1146645Clytia hemisphaericaexon
TCONS_00001233-exon-sc0000007-1510915933:1146360..1146399TCONS_00001233-exon-sc0000007-1510915933:1146360..1146399Clytia hemisphaericaexon
TCONS_00001233-exon-sc0000007-1510915933:1146129..1146197TCONS_00001233-exon-sc0000007-1510915933:1146129..1146197Clytia hemisphaericaexon
TCONS_00001233-exon-sc0000007-1510915933:1144144..1144223TCONS_00001233-exon-sc0000007-1510915933:1144144..1144223Clytia hemisphaericaexon
TCONS_00001233-exon-sc0000007-1510915933:1143780..1143867TCONS_00001233-exon-sc0000007-1510915933:1143780..1143867Clytia hemisphaericaexon
TCONS_00001233-exon-sc0000007-1510915933:1143435..1143537TCONS_00001233-exon-sc0000007-1510915933:1143435..1143537Clytia hemisphaericaexon
TCONS_00001233-exon-sc0000007-1510915933:1143110..1143342TCONS_00001233-exon-sc0000007-1510915933:1143110..1143342Clytia hemisphaericaexon
TCONS_00001233-exon-sc0000007-1510915933:1142813..1142908TCONS_00001233-exon-sc0000007-1510915933:1142813..1142908Clytia hemisphaericaexon
TCONS_00001233-exon-sc0000007-1510915933:1140241..1140303TCONS_00001233-exon-sc0000007-1510915933:1140241..1140303Clytia hemisphaericaexon
TCONS_00001233-exon-sc0000007-1510915933:1140002..1140100TCONS_00001233-exon-sc0000007-1510915933:1140002..1140100Clytia hemisphaericaexon
TCONS_00001233-exon-sc0000007-1510915933:1139822..1139875TCONS_00001233-exon-sc0000007-1510915933:1139822..1139875Clytia hemisphaericaexon
TCONS_00001233-exon-sc0000007-1510915933:1139532..1139635TCONS_00001233-exon-sc0000007-1510915933:1139532..1139635Clytia hemisphaericaexon
TCONS_00001233-exon-sc0000007-1510915933:1139169..1139254TCONS_00001233-exon-sc0000007-1510915933:1139169..1139254Clytia hemisphaericaexon
TCONS_00001233-exon-sc0000007-1510915933:1138935..1138999TCONS_00001233-exon-sc0000007-1510915933:1138935..1138999Clytia hemisphaericaexon
TCONS_00001233-exon-sc0000007-1510915933:1138765..1138812TCONS_00001233-exon-sc0000007-1510915933:1138765..1138812Clytia hemisphaericaexon
TCONS_00001233-exon-sc0000007-1510915933:1138480..1138647TCONS_00001233-exon-sc0000007-1510915933:1138480..1138647Clytia hemisphaericaexon
TCONS_00001233-exon-sc0000007-1510915933:1137666..1137802TCONS_00001233-exon-sc0000007-1510915933:1137666..1137802Clytia hemisphaericaexon
TCONS_00001233-exon-sc0000007-1510915933:1137340..1137447TCONS_00001233-exon-sc0000007-1510915933:1137340..1137447Clytia hemisphaericaexon
TCONS_00001233-exon-sc0000007-1510915933:1136849..1137209TCONS_00001233-exon-sc0000007-1510915933:1136849..1137209Clytia hemisphaericaexon
TCONS_00001233-exon-sc0000007-1491911889:1147551..1147709TCONS_00001233-exon-sc0000007-1491911889:1147551..1147709Clytia hemisphaericaexon
TCONS_00001233-exon-sc0000007-1491911889:1147213..1147356TCONS_00001233-exon-sc0000007-1491911889:1147213..1147356Clytia hemisphaericaexon
TCONS_00001233-exon-sc0000007-1491911889:1146533..1146645TCONS_00001233-exon-sc0000007-1491911889:1146533..1146645Clytia hemisphaericaexon
TCONS_00001233-exon-sc0000007-1491911889:1146360..1146399TCONS_00001233-exon-sc0000007-1491911889:1146360..1146399Clytia hemisphaericaexon
TCONS_00001233-exon-sc0000007-1491911889:1146129..1146197TCONS_00001233-exon-sc0000007-1491911889:1146129..1146197Clytia hemisphaericaexon
TCONS_00001233-exon-sc0000007-1491911889:1144144..1144223TCONS_00001233-exon-sc0000007-1491911889:1144144..1144223Clytia hemisphaericaexon
TCONS_00001233-exon-sc0000007-1491911889:1143780..1143867TCONS_00001233-exon-sc0000007-1491911889:1143780..1143867Clytia hemisphaericaexon
TCONS_00001233-exon-sc0000007-1491911889:1143435..1143537TCONS_00001233-exon-sc0000007-1491911889:1143435..1143537Clytia hemisphaericaexon
TCONS_00001233-exon-sc0000007-1491911889:1143110..1143342TCONS_00001233-exon-sc0000007-1491911889:1143110..1143342Clytia hemisphaericaexon
TCONS_00001233-exon-sc0000007-1491911889:1142813..1142908TCONS_00001233-exon-sc0000007-1491911889:1142813..1142908Clytia hemisphaericaexon
TCONS_00001233-exon-sc0000007-1491911889:1140241..1140303TCONS_00001233-exon-sc0000007-1491911889:1140241..1140303Clytia hemisphaericaexon
TCONS_00001233-exon-sc0000007-1491911889:1140002..1140100TCONS_00001233-exon-sc0000007-1491911889:1140002..1140100Clytia hemisphaericaexon
TCONS_00001233-exon-sc0000007-1491911889:1139822..1139875TCONS_00001233-exon-sc0000007-1491911889:1139822..1139875Clytia hemisphaericaexon
TCONS_00001233-exon-sc0000007-1491911889:1139532..1139635TCONS_00001233-exon-sc0000007-1491911889:1139532..1139635Clytia hemisphaericaexon
TCONS_00001233-exon-sc0000007-1491911889:1139169..1139254TCONS_00001233-exon-sc0000007-1491911889:1139169..1139254Clytia hemisphaericaexon
TCONS_00001233-exon-sc0000007-1491911889:1138935..1138999TCONS_00001233-exon-sc0000007-1491911889:1138935..1138999Clytia hemisphaericaexon
TCONS_00001233-exon-sc0000007-1491911889:1138765..1138812TCONS_00001233-exon-sc0000007-1491911889:1138765..1138812Clytia hemisphaericaexon
TCONS_00001233-exon-sc0000007-1491911889:1138480..1138647TCONS_00001233-exon-sc0000007-1491911889:1138480..1138647Clytia hemisphaericaexon
TCONS_00001233-exon-sc0000007-1491911889:1137666..1137802TCONS_00001233-exon-sc0000007-1491911889:1137666..1137802Clytia hemisphaericaexon
TCONS_00001233-exon-sc0000007-1491911889:1137340..1137447TCONS_00001233-exon-sc0000007-1491911889:1137340..1137447Clytia hemisphaericaexon
TCONS_00001233-exon-sc0000007-1491911889:1136849..1137209TCONS_00001233-exon-sc0000007-1491911889:1136849..1137209Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000007supercontigsc0000007:1136849..1147709 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.275559	2.12938	3.91338	1.67019	3.16211	1.14872	2.49225	4.36892	0.165598	0.48207	0.39753	0.200602	0.151838	1.61228	0.018839	0.0607035	0.297863	0.765425	0.435624	0.0981391	0.290365	0	1.44117	0.737157	12.3791	7.7624	2.63777	0.700091	0	0.390461
Blast
[Close]
BLAST of TCONS_00001233 vs. Swiss-Prot (Human)
Match: IF172 (Intraflagellar transport protein 172 homolog OS=Homo sapiens GN=IFT172 PE=1 SV=2)

HSP 1 Score: 1090.1 bits (2818), Expect = 0.000e+0
Identity = 510/761 (67.02%), Postives = 636/761 (83.57%), Query Frame = 1 
Query:  121 MQLKHLKTTLAPQDGAAKITAMAWAPNNTKMAIVSTDRVVVLFDEHGEKRDKFGTKPGDAKTGKKGYQVKGLAFSPDSTKIAVGQTDNIVFVYKIGDEWGERKVICNKFLQQSAVTCLVWPPENQYIIFGLADGKVRMASLKTNKSQTVYGTGIHCISLCVSPDGKGVLSGHADGAIVRYMFEDTGTGLTQGQVVKHGCPPYALCWGS-SIIAAGCDKRIVAYGKEGRVLQNFDYSKDDEEKEFTVAIASPSGQSVVVGSYDRLRVFNWSPRRGAWEESKPKEINNLYTISSLSWKRDGSRLCAGTLCGGVELFDCCLRRSIFKNKFEMTYVGLSQVIVKNLASGARVVLKSHYGYEIDEVKIMGKDRFLVGHTSETLLVGDLNENKLSELPWHNSGGNEKFFFENETVCMVFNAGELSLIEYGQNEVLATVRTEFMNPHLISVRLNERKLKDQEDNKKLGYLIDLKTICVMDLMSGMVVANISHDVKIDWLEMNETGXXXXXXXXXXXXXXADIQSETKTTISTYCSYVQWVPLSDVVVAQSRSDLCVWYNIESPERVTIVPIKGDITDLEKIEGKTNVIVQEGVQSINYTLDEGLIEFGTAMEDGDYARAVSFLEGLEMSPETEAMWKTLSKVAMENKELFIAERCFAALGDVSKARYLRGINDLIDELNPSY-GDPMYHPTIRAKLAIFEKQFKLAESIYLEQGQVDEAMEMYQEVHKWDESLAIAEAKRHPELENLRSYYLQYLMKSGQEEKAGEVK 2397
            M LKHL+T L+PQDGAAK+T MAW+ NN K A+ + DRVV+L+DEHGE+RDKF TKP D K G+K Y VKG+AFSPDSTKIA+GQTDNI++VYKIG++WG++KVICNKF+Q SAVTCL WP E   I+FGLA+GKVR+A+ KTNKS T+YGT  + +SL  +  GKG+LSGHADG IVRY F+D G+G +QG++V H CPPYAL W + SI+AAGCD++IVAYGKEG +LQ FDYS+D +E+EFT A++SP GQSVV+GSYDRLRVFNW PRR  WEE+KPKEI NLYTI++L+WKRDGSRLC GTLCGGVE FDCCLRRSI+KNKFE+TYVG SQVIVKNL+SG RVVLKSHYGYE++EVKI+GK+R+LV HTSETLL+GDLN N+LSE+ W  SGGNEK+FFENE VCM+FNAGEL+L+EYG N+ L +VRTEFMNPHLISVR+NER  +  EDNKKL YLID+KTI ++DL+ G  +  +SH+ ++DWLE+NETG KLLFRD+KLRL L DI+S +KT I  +CSY+QWVP SDV+VAQ+R+ LCVWYNIE+PERVT+  I+GD+  LE+  GKT V+V EGV ++ YTLDEGLIEFGTA++DG+Y RA +FLE LEM+PETEAMWKTLSK+A+E ++L IAERCF+ALG V+KAR+L   N++ D+++  Y G+      +RA+LA+ EK +KLAE I+LEQ  V+EAM MYQE+H+WDE +A+AEAK HP LE LR  Y Q+LM + QEE+AGE++
Sbjct:    1 MHLKHLRTLLSPQDGAAKVTCMAWSQNNAKFAVCTVDRVVLLYDEHGERRDKFSTKPADMKYGRKSYMVKGMAFSPDSTKIAIGQTDNIIYVYKIGEDWGDKKVICNKFIQTSAVTCLQWPAE-YIIVFGLAEGKVRLANTKTNKSSTIYGTESYVVSLTTNCSGKGILSGHADGTIVRYFFDDEGSGESQGKLVNHPCPPYALAWATNSIVAAGCDRKIVAYGKEGHMLQTFDYSRDPQEREFTTAVSSPGGQSVVLGSYDRLRVFNWIPRRSIWEEAKPKEITNLYTITALAWKRDGSRLCVGTLCGGVEQFDCCLRRSIYKNKFELTYVGPSQVIVKNLSSGTRVVLKSHYGYEVEEVKILGKERYLVAHTSETLLLGDLNTNRLSEIAWQGSGGNEKYFFENENVCMIFNAGELTLVEYGNNDTLGSVRTEFMNPHLISVRINERCQRGTEDNKKLAYLIDIKTIAIVDLIGGYNIGTVSHESRVDWLELNETGHKLLFRDRKLRLHLYDIESCSKTMILNFCSYMQWVPGSDVLVAQNRNSLCVWYNIEAPERVTMFTIRGDVIGLERGGGKTEVMVMEGVTTVAYTLDEGLIEFGTAIDDGNYIRATAFLETLEMTPETEAMWKTLSKLALEARQLHIAERCFSALGQVAKARFLHETNEIADQVSREYGGEGTDFYQVRARLAMLEKNYKLAEMIFLEQNAVEEAMGMYQELHRWDECIAVAEAKGHPALEKLRRSYYQWLMDTQQEERAGELQ 760
The following BLAST results are available for this feature:
BLAST of TCONS_00001233 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
IF1720.000e+067.02Intraflagellar transport protein 172 homolog OS=Ho... [more]
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