TCONS_00001230 (transcript) - C. hemisphaerica

Overview
NameTCONS_00001230
Unique NameTCONS_00001230
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2416

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00001230 ID=TCONS_00001230|Name=TCONS_00001230|organism=Clytia hemisphaerica|type=transcript|length=2416bp
GTGATGTTCCCATACATTCTGATTATACTAAATTTACTAATTGTATCACG
CTGTCCAAGCAGCTGATTCTTTTAtcatttgtatttattttatttagaca
taaaaaataaaaaacaatatgCAGCTTAAACACTTAAAAACTACACTGGC
TCCCCAGGATGGAGCTGCTAAGATCACAGCAATGGCATGGGCTCCTAACA
ATACCAAAATGGCAATAGTATCAACTGATCGtgtagttgttctttttgat
gAACATGGAGAAAAAAGGGACAAATTTGGAACAAAACCTGGTGATGCTAA
AACTGGGAAGAAAGGTTACCAAGTGAAAGGACTAGCATTTTCTCCTGATT
CCACCAAGATAGCTGTTGGACAAACAGATAACATTGTTTTTGTATACAAG
ATTGGTGACGAATGgGGCGAAAGAAAAGTTATATGCAACAAGTTTCTCCA
ACAGAGTGCTGTTACATGTTTGGTTTGGCCCCCAGAAAATCAATATATTA
TTTTTGGTCTTGCTGATGGAAAGgTCAGGATGGCAAGTctaaaaaccaac
aaatcacaAACTGTCTATGGAACTGGTATCCATTGTATATCTTTGTGTGT
CAGTCCTGATGGGAAAGGTGTTTTGTCAGGGCATGCAGATGGAGCCATTG
TCAGATATATGTTTGAAGATACTGGGACAGGTTTGACCCAGGGGCAAGTT
GTGAAACATGGCTGTCCACCGTATGCCTTGTGTTGGGGCTCATCAATCAT
TGCAGCAGGATGTGATAAAAGAATTGTTGCATATGGAAAAGAAGGGCGGG
TATTACAAAACTTCGACTATTCAAAAGATGATGAGGAAAAAGAGTTCACA
GTTGCAATAGCAAGTCCAAGTGGTCAGTCAGTGGTGGTTGGAAGTTATGA
TAGATTACGTGTTTTCAATTGGAGTCCCCGAAGAGGAGCCTGGGAAGAAT
CTAAACCAAAAGAGATCAATAATTTATACACCATCAGCTCACTTTCTTGG
AAAAGAGATGGTTCAAGGCTTTGTGCTGGCACACTCTGTGGTGGAGTTGA
ACTGTTTGATTGCTGTTTGAGAAGATCTATTTTCAAGAATAAATTTGAAA
TGACTTATGTTGGGTTGAGCCAGGTTATTGTCAAAAATTTGGCATCAGGA
GCCAGAGTTGTTTTAAAATCACATTATGGATACGAGATTGATGAAGTGAA
AATAATGGGGAAGGACAGATTTCTTGTTGGACACACTTCAGAAACATTGC
TTGTGGGAGATCTAAACGAAAACAAGCTTAGTGAGCTTCCATGGCATAAT
TCAGGTGGAAATGAGAAGttcttctttgaaaatgaaacaGTTTGTATGGT
ATTCAATGCAGGAGAATTATCTTTGATCGAGTATGGTCAAAATGAAGTGT
TAGCTACAGTCAGAACAGAATTCATGAACCCTCATCTTATAAGCGTACGT
TTGAATGAAAGAAAGCTGAAAGATCAAGAAGACAATAAAAAATTGGGTTA
TTTGATTGACCTGAAAACTATATGTGTCAtgGACTTGATGTCAGGGATGG
TTGTAGCCAATATTTCACATGATgtcaaaattgactggttagaGATGAAT
GAGACTGGAAAGAAGCTCTTATTCCGAGACAAAAAACTGAGGTTATTATT
GGCAGATATTCAAAGTGAAACAAAAACCACTATTTCTACATATTGCTCTT
ATGTGCAATGGGTGCCTTTGAGTGATGTTGTGGTAGCTCAAAGCAGAAGC
GATCTTTGTGTTTGGTACAATATTGAATCACCTGAACGAGTGACTATCGT
TCCCATCAAAGGTGACATCACAGACCTTGAGAAGATCGAGGGTAAAACAA
ACGTGATCGTACAAGAAGGTGTACAATCGATCAATTACACATTAGACGAA
GGGCTAATCGAGTTTGGAACTGCTATGGAAGATGGTGATTATGCTAGGGC
TGTTTCGTTTCTGGAAGGATTGGAGATGTCACCTGAAACAGAAGCTATGT
GGAAGACTCTCAGCAAGGTTGCCATGGAGAATAAAGAGCTTTTCATCGCC
GAAAGGTGTTTTGCTGCACTAGGAGATGTTTCTAAAGCTCGCTATTTACG
TGGAATCAACGACTTGATCGATGAACTGAACCCAAGTTATGGAGATCCTA
TGTATCATCCGACTATTCGCGCCAAACTGGCCATTTTTGAGAAACAATTC
AAACTTGCAGAAAGTATTTACTTGGAACAAGGACAAGTTGATGAAGCGAT
GGAGATGTACCAAGAAGTTCACAAGTGGGATGAATCTTTGGCCATCGCCG
AAGCCAAAAGACATCCAGAACTAGAGAACCTTAGAAGCTATTACTTGCAA
TATTTGATGAAGTCAGGCCAAGAAGAAAAAGCTGGAGAGGTTAAAACCTT
GAATTTAGTTAACAGA
Run BLAST on NCBI

transcript from alignment at sc0000007:1136849..1147707-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00001230 ID=TCONS_00001230|Name=TCONS_00001230|organism=Clytia hemisphaerica|type=transcript|length=10859bp|location=Sequence derived from alignment at sc0000007:1136849..1147707- (Clytia hemisphaerica)
GTGATGTTCCCATACATTCTGATTATACTAAATTTACTAATTGTATCACG
CTGTCCAAGCAGCTGATTCTTTTATCATTTGTATTTATTTTATTTAGACA
TAAAAAATAAAAAACAATATGCAGCTTAAACACTTAAAAACTACACTGGC
TCCCCAGGTATGAAAACTTTCTTTTTTACAGTGTTGTAACTTTTCTCTTC
ATATAAAAAACTATTTAGGAATGAAATATTAAAGAACTCAAAATATAACC
ATTGCTGAACTTTATCTTTTTCATTTCACCCAGAGGCAAGACTGTTTAAT
CCTTTCTAGTATGATTTATTGTTATACCTTTAAATTGTAATTTTTATGAA
GGATGGAGCTGCTAAGATCACAGCAATGGCATGGGCTCCTAACAATACCA
AAATGGCAATAGTATCAACTGATCGTGTAGTTGTTCTTTTTGATGAACAT
GGAGAAAAAAGGGACAAATTTGGAACAAAACCTGGTGATGCTAAAGTAAG
CTCTATCTAAGTCAAAAAATCCCTTTGTGATAGAACAAATAAAAGTTATC
ACATGATATCGATTACAATATGGGATGTATTATATTAAGTTAAACTTTTT
CCTCATATTTTTGAGCCCGTATGCCAGGAAACTATCAAAAACTTTGAACA
AGAAAAATATATCCAATATTGTGCGAGTAAGTTTGATAATTGGTTTAGCA
TTAACTTGAAAAATACGACCAAACTTTTCTCTCTCCATTTGTGTCTTTTT
CTATGTTTTTTTTTCTCTTCATGCATTTTGTTCTTCCTCTATTTTGATGA
AATTAACACCAAAACATTTATAAAAAATCCAAAGGTCATTAAAATGTTAA
AAACATTCTTTTGTATAACTCTTCGGATGATTTGCTGCTCTATCAGCCAA
TCAGATTGCTCATATTTTTCATGTTGATGAAAAGATTAAATTATTTTAGT
AGTCACATAAGCATAAGCCTTGGATGAAATAATGAATCTTCTTCATTTAT
TGATTTCAAATCTTTCTTACTATCCACACCAAAGTTACCTTTCTAAATGA
TTGTTCTTTTAGACTGGGAAGAAAGGTTACCAAGTGAAAGGACTAGCATT
TTCTCCTGATTCCACCAAGATAGCTGTTGGACAAACAGATAACATTGTTT
TTGTATACAAGATTGGTGACGAATGGTAAGACTAAGAACATTGATCTTTC
TAAAAACTGAAACATCTACAGTCAGATATTATTTACTTATATTTGAAGAT
CGAACATAATATGAAAATGTTATTTATATATATTAATTAATTTTTGATTT
TATTTTAGGGGCGAAAGAAAAGTTATATGCAACAAGTTTCTCCAACAGGT
AAAGTATCTTTTTAAATTGATTATTATTTCATCACAAGAGAAATTTTTTT
AACATTTGATACCATAGTATTGTATTATCCTATACTGTGTTAAATGAATG
ATTTTACTTTACACATCTGCTATAATAATATAATTTAATGAGGATCAATT
TTTACATTAGAGTGCTGTTACATGTTTGGTTTGGCCCCCAGAAAATCAAT
ATATTATTTTTGGTCTTGCTGATGGAAAGGTTTGTGACTTTTGACATTTT
GACTTTTATGATGGATGATATCTCTTTTGGGATTCAAATTTTATAAATTG
ATAAAGTAAAATAGTTGTCTGTTTGACCATACCTCCTAAATCTATAGGGC
TGACAAAATGAATGGCAAAAAAAGTGTTTTTAAAACCAGCCTAATGTCAC
CCCATAAGTGACCATTTCTTAGCTGAACAGTTAATTTATTTTTTTGAAAA
CAAATAATTAATTTTACTATACTCATGAATTTTAAAAATCAAAAGGTGAT
CCTAAAAGTCTCAGCTTTCAAAGATGGTTACATTTAAGAGATGGTATTGG
TAGGAAAGGGAGATCTACTTTTTAACCTGGAAATATATATTGACGATATA
AAGCATACAAACACCTAAAATTTTAGATCACACTTCAAATGATTGAGTTT
GAGAATGATTATTTTCTTCATCTTTCTGTAATGTTTTAAAATTTCCATTT
TTTTTTAGGTCAGGATGGCAAGTCTAAAAACCAACAAATCACAAACTGTC
TATGGAACTGGTATCCATTGTATATCTTTGTGTGTCAGGTTGGCATTCTG
TTTTAATTACATAAATGATTTTCAAACTATAAAATGAAAGCAATATTACT
ATTATGTTAAGTCTTTGAAGCTTGTAAATGAAGACATAATTGAGTACAGC
TTTCAAGAAACTACTTTAACAATTCATATTTAAGCATTTTCACAACAGAT
AATAAACTAAAAATTTTTTTGAAAAAGTTTCATTTAATATAAACATTTTC
TTGACTGGACAAATCCAATAACTGTTTCAGGTTAAATTATCTTTGCCATC
TGTTCTCTTTTTAGTCCTGATGGGAAAGGTGTTTTGTCAGGGCATGCAGA
TGGAGCCATTGTCAGATATATGTTTGAAGATACTGGGACAGGTTTGACCC
AGGTATTTTACATATTAAATGTTAAAACATTTAAAGTAGACAAACTAAAC
TAATATTAGGTATATTTCTTTTTGAGAAGTCCGACTGTTACTAGAAGAGT
CAATTGCACTTCAGACAAACAATCATTCCAAAGAATAATTTGCAAATTTC
TTTTTTTTTGAAGTGCATTACACAAAGAATAATACAAAGAATTATATGCT
ATCCTAATATTCAAATCTCAAGATTGGTTCGATTTTTTCCATAGGGGCAA
GTTGTGAAACATGGCTGTCCACCGTATGCCTTGTGTTGGGGCNTACAAGA
GAAAATTTTTTAACATTTGATACCACAGTATTGTATTATCCTATACTGTG
TTAAATGAATGATTTTACTTTACACATCTGCTATAATAATATAATTTAAT
GAGAATCAATTTTTACATTAGAGTGCTGTTACATGTTTGGTTTGGCCCCC
AGAAAATCAATATATTATTTTTGGTCTTGCTGATGGAAAGGTTTGTGACT
TATGACATTTTGACTTTTATTATATCATGATATAATGATGGATGATATCT
CTTTTAGGATTCAAATTTTATAAATTGATGAAGTAAAATAGTTGTCTGTT
TGACCATACCTCCTAAATCTATAGGGCTGACAAAATGAATTGCAAAAAAA
GTGTTTTTAAAACCAGCCTAATGTCACCCCATAAGTGGCCATTTCTTAGC
TGAACAGTTAATTTATTTTTTTGAAAACATATAATTAATTTTACTATACT
CGTGAATTTTAAATATCAAAAGGTGGTCCTAAAAGTCTCAGCTTTCAAGA
TGGTTACATTTAAGAGATGGTATTGTTAGGAAAGGGAGATCTACTTTTTA
ACCTGGAAATATATATTGACGATATAAAGCATACAAACACCTAAAATTTT
AGATCACACTTCAAATGATTGAGTTTGAGAATGATTATTTTCTTCATCTT
TCTGTAATGTTTTAAAATTTCCATTTTTTTTTAGGTCAGGATGGCAAGTC
TAAAAACCAACAAATCACAAACTGTCTATGGAACTGGTATCCATTGTATA
TCTTTGTGTGTCAGGTTGGCATTCTGTTTTAATTACATAAATGATTTTCA
AACTATAAAATGAAAGCAATATTACTATTATGTTAAGTCTTTGAAGCTTG
TAAATGAAGACATAATTGAGTACAGCTTTCAAGAAACTACTTTAACAATT
CATATTTAAGCATTTTCACAACAGATAATAAACTAAAAATTTTTTTGAAA
AAGTTTCATTTAATATAAACATTTTCTTGACTGGACAAATCCAATAACTG
TTTCAGGTTAAATTATCTTTGCCATCTGTTCTCTTTTTAGTCCTGATGGG
AAAGGTGTTTTGTCAGGGCATGCAGATGGAGCCATTGTCAGATATATGTT
TGAAGATACTGGGACAGGTTTGACCCAGGTATTTTACATATTAAATGTTA
AAACATTTAAAGTAGACAAACTAAACTAATATTAGGTATATTTCTTTTTG
AGAAGTCCGACTGTTACTAGAAGAGTCAATTGCACTTCAGACAAACAATC
ATTCCAAAGAATAATTTGCAAATTTCTTTTTTTTTGAAGTGCATTACACA
AAGAATAATACAAAGAATTATATGCTATCCTAATATTCAAATCTCAAGAT
TGGTTCGATTTTTTCCATAGGGGCAAGTTGTGAAACATGGCTGTCCACCG
TATGCCTTGTGTTGGGGCTCATCAATCATTGCAGCAGGATGTGATAAAAG
AATTGTTGCATATGGAAAAGAAGGTATTGTTTTTTGAGCTTATGTTTCAC
GAGAAAATCATTTTTATTTAACAAATGATTAATCCTAATATTTCATTTCC
CTAAACTCTCTTTAGGGCGGGTATTACAAAACTTCGACTATTCAAAAGAT
GATGAGGAAAAAGAGTTCACAGTTGCAATAGCAAGTCCAAGTGGTCAGTC
AGTGGTGGTTGGAAGTTATGATAGATTACGTGTTTTCAATTGGAGTCCCC
GAAGAGGAGCCTGGGAAGAATCTAAACCAAAAGAGATCAATAATTTATAC
ACCATCAGCTCACTTTCTTGGAAAAGAGATGGTTCAAGGCTTTGTGCTGT
AAGTTAGATAATTCCCTCTTATTTTTTGTCCTGCTGGAATATAGGTTTTA
ATACATAAAGACAGTTTGACTTACATATGGATGAAAAGTTTCAATTAGTA
TTCTACATGCAAATATAAAGAATTTTTTTAAATGGTATTTACAAATATAT
CATAATACAGTAGCTAAATCTTACTGAATAATATTATTTCTGACTTCAGG
GCACACTCTGTGGTGGAGTTGAACTGTTTGATTGCTGTTTGAGAAGATCT
ATTTTCAAGAATAAATTTGAAATGACTTATGTTGGGTTGAGCCAGGTAAA
ATGAAGGATTTTTTGTTATACTTTTGAAGATATTAACCCTTCAACCCTTT
CAGACCCGGTACACACGATTTAAATCTGCCAAAATACCAAGTCCTGACCA
CTTGATTTAAAAGGGCATACACCGGATGCTGTTAGAAAGAGTACAAAAAT
ATCTTTTCAATGGTACAAAAACCATTGCCTAAGTCTCAAGTTAAAACCTT
TTATGCCAATTTGAAAATTTGGAAAAAATGTTGCGCGCTGGAAAGGTTAA
GAAAAAATTAAATAAGAATCTGTATTTTGTAAAAAATATCTAAAAAATTG
TCCAGAGGAAAACCAATTTTCTCTGTCTGTGCGAGAGTGTGGAACATATA
ACATAGTTGAAAATAACACATCATCTTTCTTATGAAAATTTCTGCCAACT
GGCCTTTTTCAACATAAAAATGAATTTAATGTTCTTCATTCGCCGCTGTG
AGGAGACATTCTTAATGTTAGCAAAGGAAAGCTTACGTTCTGCTCTCTAA
AGAGCAAATCATCTCGTTTCGGTTCTCTAGCCTTCAGAATTTCTCGACTG
ACTAGTTGGTCACTATCCTTGTTTTTTTTTAGCCACAGTGCTAGCTGGTT
GCAATTGAGGTCAAAAAAAGAAATGTTCTGAACAGATGCGATTCAAGCGC
AGGCCCTGGCCATAAGGAATGGCCTTTTTTGAATGAAATGCACAATTATA
AAAAAATATTTAGTTATTTTCACTAACATTACAAATACAAAGAAACTTTG
TTATTATTAATGCTAACTGTTGATTTCTAGGTTATTGTCAAAAATTTGGC
ATCAGGAGCCAGAGTTGTTTTAAAATCACATTATGGATACGAGGTTTGTA
TATAAATAATTTTTATAAGTAGAAAATCTATCATCAATATTTCTGCCTAA
TCAACTTTTTCTCAAGAATCTGTAATATCATATTTTAAAGTTATATTTCT
TGGCCCATTATTATCCCTTGCTGATGTTTTTAGATTGATGAAGTGAAAAT
AATGGGGAAGGACNTTGTCCACCGTATGCCTTGTGTTGGGGCTCATCAAT
CATTGCAGCAGGATGTGATAAAAGAATTGTTGCATATGGAAAAGAAGGTT
TTGTTTTTTGAGCTTATGTTTCACGAGAAAATCATTTTTATTTAACAAAT
GATTAATCCTAATATTTCATTTCCCTAAACTCTCTTTAGGGCGGGTATTA
CAAAACTTCGACTATTCAAAAGATGATGAGGAAAAAGAGTTCACAGTTGC
AATAGCAAGTCCAAGTGGTCAGTCAGTGGTGGTTGGAAGTTATGATAGAT
TACGTGTTTTCAATTGGAGTCCCCGAAGAGGAGCCTGGGAAGAATCTAAA
CCAAAAGAGATCAATAATTTATACACCATCAGCTCACTTTCTTGGAAAAG
AGATGGTTCAAGGCTTTGTGCTGTAAGTTAGATAATTCCCTCTTATTTTT
TGTCCTGCTGGAATATAGGTTTTAATACATAAAGACAGTTTGACTTACAT
ATGGATGAAAAGTTTCAATTACTATTCTACATGCAAATATAAAGAATTTT
TTTAAATGGTATTTACAAATATATCATAATACAGTAGCTACATCTTACTG
AATAATATTATTTCTGACTTCAGGGCACACTCTGTGGTGGAGTTGAACTG
TTTGATTGCTGTTTGAGAAGATCTATTTTCAAGAATAAATTTGAAATGAC
TTATGTTGGGTTGAGCCAGGTAAAATGAAGGATTTTTTGTTATACTTTTG
AAGATATTAACCCTTCAACCCTTTCAGACCCGGTACACACGATTTAAATC
TGCCAAAATACCAAGTCCTGACCACTTGATTTAAAAGGGCATACACCGGA
TGCTGTTAGAAAGAGTACAAAAATATCTTTTCAATGGTACAAAAACCATT
GCCTAACTCTCAAGTTAAAACCTTTTATGCCAATTTGAAAATTTGGAAAA
AATGTTGCGCGCTGGAAAGGTTAAGAAAAAATTAAATAAGAATCTGTATT
TTGTAAAAAATATCTAAAAAATTGTCCAGAGGAAAACCAATTTTCTCTGT
CTGTGCGAGAGTGTGGAACATATAACATAGTTGAAAATAACACATCATCT
TTCTTATGAAAATTTCTGCCAACTGGCCTTTTTCAACATAAAAATGAATT
TAATGTTCTTCATTCGCCGCTGTGAGGAGACATTCTTAATGTTAGCAAAG
GAAAGCTTACGTTCTGCTCTCTAAAGAGCAAATCATCTCGTTTCGGTTCT
CTAGCCTTCAGAATTTCTCGACTGACTAGTTGGTCACTATCCTTGTTTTT
TTTTAGCCACAGTGCTAGCTGGTTGCAATTGAGGTCAAAAAAAGAAATGT
TCTGAACAGATGCGATTCAAGCGCAGGCCCTGGCCATAAGGAATGGCCTT
TTTTGAATGAAATGCACAATTATAAAAAAATATTTAGTTATTTTCACTAA
CATTACAAATACAAAGAAACTTTGTTATTATTAATGCTAACTGTTGATTT
CTAGGTTATTGTCAAAAATTTGGCATCAGGAGCCAGAGTTGTTTTAAAAT
CACATTATGGATACGAGGTTTGTATATAAATAATTTTTATAAGTAGAAAA
TCTATCATCAATATTTCTGCCTAATCAACTTTTTCTCAAGAATCTGTAAT
ATCATATTTTAAAGTTATATTTCTTGGCCCATTATTATCCCTTGCTGATG
TTTTTAGATTGATGAAGTGAAAATAATGGGGAAGGACAGATTTCTTGTTG
GACACACTTCAGAAACATTGCTTGTGGGAGATCTAAACGAAAACAAGCTT
AGTGAGGTAAGTTCCTTCCTCAAGAACTATTTTTGAAATTAATATCATAA
GATCTTTCAAGTGACATTATGGAACATAAAAAATAACAGAACTTGATTTT
GATAATTATACTGTTTTGTTTTTATGATTCAGCTTCCATGGCATAATTCA
GGTGGAAATGAGAAGTTCTTCTTTGAAAATGAAACAGTAAGTTTGTTTAA
AATTCAATACATTTTTCTTTTGGAAAAAGTAAAACAAAGAAAGTAGATTA
CTTCAAAACAATTTTAAATCTTTCAAAGGTTCCTTAGCTTGCCACTGCTA
AAATCATACCTTGTTAGCATTACGAGTTTCAGGACTTCTATGTGTTACTT
TGTTATTGTTTTAATCAATTAGGTTTGTATGGTATTCAATGCAGGAGAAT
TATCTTTGATCGAGTATGGTCAAAATGAAGTGTTAGCTACAGTCAGAACA
GAATTCATGAACCCTCATCTTATAAGGTAATGATTTTTCAAATGCAGATA
TGAAACGATTGTGAAATGTATTCTAGGGTTATGATATTTAGAATTTGATT
TTTGAATAGTCTATTCCATTAAACAAATTTCTTTAGATATTTCAGAATAA
TTTACCCTGCTGCCTCACATTCCTGCCTTGGTATTTTTACCGGAAAGAAT
TGAAACTCCATTCTTTCTTACCAGCCATCCCTCTGTAAGAACTAGACTGG
ACGCTAGTCAGTATGATTCTCAATAGCAGTATTTCTTGACTTAACTTTTT
CAGCGTACGTTTGAATGAAAGAAAGCTGAAAGATCAAGAAGACAATAAAA
AATTGGGTTATTTGATTGACCTGAAAACTATATGTGTCAGTAAGTAAACG
TTTTGTAAAAAATCGACTATTTTGGCATTATTAGCAGCATTTCTCATTTC
TATCGGGTGAATACAGATTTGAAATATTTGGGCTATTATGCTAAGCTCAG
TTGTAAATTAGCCTTAGGATTTTAGTTTTTTTTTACTTTAAATTTCTTTA
ATTTTCAGTGGACTTGATGTCAGGGATGGTTGTAGCCAATATTTCACATG
ATGTCAAAATTGACTGGTTAGAGGTACTCCACTCTCATCTCTTATTGTCT
CTAAGTTATGAATTTCCAAGATAATATATTTATATTTAGATGCAAATCTC
AAGAGTTTGAGTGGTTGACAAATCTTGAATTTTCTCTGTTTATAGATGAA
TGAGACTGGAAAGAAGCTCTTATTCCGAGACAAAAAACTGAGGGTAAGTA
ATTTAGATAATTTCCGATACTCTTCCTCAAATTAGGACAGTTGTTTTAAA
GTGTGAAGTGATTTCTGGTTTCAACTTCTAATTATAGTACACTTACCTCT
CAACTTTTAGTTATTATTGGCAGATATTCAAAGTGAAACAAAAACCACTA
TTTCTACATATTGCTCTTATGTGCAATGGGTGCCTTTGAGTGATGTTGTG
GTAGCTCAAAGCAGAAGCGATCTTTGTGTTTGGTACAATATTGAATCACC
TGAACGAGTGACTATCGTTCCCATCAAAGTAAGAGACCATTTTGTTCATT
TCCTCTCAAAGGCTTAACGGCGATCAAAAATAAACTATTTAAAAACTATT
TTTTATGTCTTTTGATTCTTTCTAATGACTTGTAATAATGACTTGTAATT
TGAGGGGTCGTTTGTTAAATTTGGTCAACTAGGTAAAAAGCTATGGCCTA
AATGCTAAAATATTACTTTTCAAAAAAGTAAAAAAAATGGCGAAAAATGA
GGGTATTAAATCATCATAAAGATATCATAAAGAAATCTTTCTTTTATCAA
TTTATTAACGATCGAAGTCTCTTCGTCCTCTTCGTGGCCAGTTTCCAAGA
AAGGTGGTCAACAATCGAGGAGATGTTGAGTGACCCCTAAGTTCGCCTGA
GCTTACAGTGTGTGATTTCTTTTTGTGGGGTTACACGAAACAAGAAATCT
GGGAGCAACTCACAAATTTGCAATTCCAGACCCTTGATCAATGAAAGCTT
CAATCAAATATGAAGACTTGGCAAATCGATTTTATATTATTTTCTCATGA
TAAAAAATTACATTAATTGACTTTGTGACCCTTGTTTTACACGGTTTAGC
CTACGATCGAGGCACCCTTATTCTGGATTTGTTATTCGAATTTCAAATCA
AAGTTGAAAAGACACTGGTTTGGAATGTTAAGTTAAACTTTCCTTGCATG
TTTAGGGTGACATCACAGACCTTGAGAAGATCGAGGGTAAAACAAACGTG
ATCGTACAAGAAGGTGTACAATCGATCAATTACACATTAGACGAAGGGCT
AATCGAGTTTGGAACTGCTATGGAAGATGGTGATTATGCTAGGTTTGTCT
TATTGGTTATTTTAATTAGATTTTAAGACATTGATCTTCTAATGCTGCAG
CAAATTTTTTAACATAAACAAACTTATTAAGATAAGGGTTATTTTTTATT
GAGATTTTCTTCTCAAAATGCTTCAACTGAGAGATTTTACCTGTCGTCTT
TTCTTCGTTGTATTACTTTTTTTTGCTCAGAAATCTGATATAAAATTGTA
TTTTGTTCAGGGCTGTTTCGTTTCTGGAAGGATTGGAGATGTCACCTGAA
ACAGAAGCTATGTGGAAGACTCTCAGCAAGGTTGCCATGGAGAATAAAGA
GCTTTTCATCGCCGAAAGGTAAGACATAAATATGATCCAACAATCATGAT
TCAATGCATAGTCCGAAACATTTTTTCTACAAAGGCTCTTTTAAGAGGAT
TCTGTAATGGGGTTCTTAAACTTTTCAAAATATATTTTTGCTTTGTAGGT
GTTTTGCTGCACTAGGAGATGTTTCTAAAGCTCGCTATTTACGTGGAATC
AACGACTTGATCGATGAACTGAACCCAAGTTATGGAGATCCTATGTATCA
TCCGACTATTCGCGCCAAACTGGCCATTTTTGAGAAACAATTCAAACTTG
CAGAAAGTATTTACTTGGAACAAGGACAAGTTGATGAAGCGATGGAGATG
TACCAAGAAGTTCACAAGTGGGATGAATCTTTGGCCATCGCCGAAGCCAA
AAGACATCCAGAACTAGAGAACCTTAGAAGCTATTACTTGCAATATTTGA
TGAAGTCAGGCCAAGAAGAAAAAGCTGGAGAGGTTAAAACCTTGAATTTA
GTTAACAGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000661XLOC_000661Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001230-exon-sc0000007-1575043694:1147551..1147707TCONS_00001230-exon-sc0000007-1575043694:1147551..1147707Clytia hemisphaericaexon
TCONS_00001230-exon-sc0000007-1575043694:1147213..1147356TCONS_00001230-exon-sc0000007-1575043694:1147213..1147356Clytia hemisphaericaexon
TCONS_00001230-exon-sc0000007-1575043694:1146533..1146645TCONS_00001230-exon-sc0000007-1575043694:1146533..1146645Clytia hemisphaericaexon
TCONS_00001230-exon-sc0000007-1575043694:1146360..1146399TCONS_00001230-exon-sc0000007-1575043694:1146360..1146399Clytia hemisphaericaexon
TCONS_00001230-exon-sc0000007-1575043694:1146129..1146197TCONS_00001230-exon-sc0000007-1575043694:1146129..1146197Clytia hemisphaericaexon
TCONS_00001230-exon-sc0000007-1575043694:1145570..1145649TCONS_00001230-exon-sc0000007-1575043694:1145570..1145649Clytia hemisphaericaexon
TCONS_00001230-exon-sc0000007-1575043694:1145206..1145293TCONS_00001230-exon-sc0000007-1575043694:1145206..1145293Clytia hemisphaericaexon
TCONS_00001230-exon-sc0000007-1575043694:1143435..1143537TCONS_00001230-exon-sc0000007-1575043694:1143435..1143537Clytia hemisphaericaexon
TCONS_00001230-exon-sc0000007-1575043694:1141386..1141618TCONS_00001230-exon-sc0000007-1575043694:1141386..1141618Clytia hemisphaericaexon
TCONS_00001230-exon-sc0000007-1575043694:1141089..1141184TCONS_00001230-exon-sc0000007-1575043694:1141089..1141184Clytia hemisphaericaexon
TCONS_00001230-exon-sc0000007-1575043694:1140241..1140303TCONS_00001230-exon-sc0000007-1575043694:1140241..1140303Clytia hemisphaericaexon
TCONS_00001230-exon-sc0000007-1575043694:1140002..1140100TCONS_00001230-exon-sc0000007-1575043694:1140002..1140100Clytia hemisphaericaexon
TCONS_00001230-exon-sc0000007-1575043694:1139822..1139875TCONS_00001230-exon-sc0000007-1575043694:1139822..1139875Clytia hemisphaericaexon
TCONS_00001230-exon-sc0000007-1575043694:1139532..1139635TCONS_00001230-exon-sc0000007-1575043694:1139532..1139635Clytia hemisphaericaexon
TCONS_00001230-exon-sc0000007-1575043694:1139169..1139254TCONS_00001230-exon-sc0000007-1575043694:1139169..1139254Clytia hemisphaericaexon
TCONS_00001230-exon-sc0000007-1575043694:1138935..1138999TCONS_00001230-exon-sc0000007-1575043694:1138935..1138999Clytia hemisphaericaexon
TCONS_00001230-exon-sc0000007-1575043694:1138765..1138812TCONS_00001230-exon-sc0000007-1575043694:1138765..1138812Clytia hemisphaericaexon
TCONS_00001230-exon-sc0000007-1575043694:1138480..1138647TCONS_00001230-exon-sc0000007-1575043694:1138480..1138647Clytia hemisphaericaexon
TCONS_00001230-exon-sc0000007-1575043694:1137666..1137802TCONS_00001230-exon-sc0000007-1575043694:1137666..1137802Clytia hemisphaericaexon
TCONS_00001230-exon-sc0000007-1575043694:1137340..1137447TCONS_00001230-exon-sc0000007-1575043694:1137340..1137447Clytia hemisphaericaexon
TCONS_00001230-exon-sc0000007-1575043694:1136849..1137209TCONS_00001230-exon-sc0000007-1575043694:1136849..1137209Clytia hemisphaericaexon
TCONS_00001230-exon-sc0000007-1510915933:1147551..1147707TCONS_00001230-exon-sc0000007-1510915933:1147551..1147707Clytia hemisphaericaexon
TCONS_00001230-exon-sc0000007-1510915933:1147213..1147356TCONS_00001230-exon-sc0000007-1510915933:1147213..1147356Clytia hemisphaericaexon
TCONS_00001230-exon-sc0000007-1510915933:1146533..1146645TCONS_00001230-exon-sc0000007-1510915933:1146533..1146645Clytia hemisphaericaexon
TCONS_00001230-exon-sc0000007-1510915933:1146360..1146399TCONS_00001230-exon-sc0000007-1510915933:1146360..1146399Clytia hemisphaericaexon
TCONS_00001230-exon-sc0000007-1510915933:1146129..1146197TCONS_00001230-exon-sc0000007-1510915933:1146129..1146197Clytia hemisphaericaexon
TCONS_00001230-exon-sc0000007-1510915933:1145570..1145649TCONS_00001230-exon-sc0000007-1510915933:1145570..1145649Clytia hemisphaericaexon
TCONS_00001230-exon-sc0000007-1510915933:1145206..1145293TCONS_00001230-exon-sc0000007-1510915933:1145206..1145293Clytia hemisphaericaexon
TCONS_00001230-exon-sc0000007-1510915933:1143435..1143537TCONS_00001230-exon-sc0000007-1510915933:1143435..1143537Clytia hemisphaericaexon
TCONS_00001230-exon-sc0000007-1510915933:1141386..1141618TCONS_00001230-exon-sc0000007-1510915933:1141386..1141618Clytia hemisphaericaexon
TCONS_00001230-exon-sc0000007-1510915933:1141089..1141184TCONS_00001230-exon-sc0000007-1510915933:1141089..1141184Clytia hemisphaericaexon
TCONS_00001230-exon-sc0000007-1510915933:1140241..1140303TCONS_00001230-exon-sc0000007-1510915933:1140241..1140303Clytia hemisphaericaexon
TCONS_00001230-exon-sc0000007-1510915933:1140002..1140100TCONS_00001230-exon-sc0000007-1510915933:1140002..1140100Clytia hemisphaericaexon
TCONS_00001230-exon-sc0000007-1510915933:1139822..1139875TCONS_00001230-exon-sc0000007-1510915933:1139822..1139875Clytia hemisphaericaexon
TCONS_00001230-exon-sc0000007-1510915933:1139532..1139635TCONS_00001230-exon-sc0000007-1510915933:1139532..1139635Clytia hemisphaericaexon
TCONS_00001230-exon-sc0000007-1510915933:1139169..1139254TCONS_00001230-exon-sc0000007-1510915933:1139169..1139254Clytia hemisphaericaexon
TCONS_00001230-exon-sc0000007-1510915933:1138935..1138999TCONS_00001230-exon-sc0000007-1510915933:1138935..1138999Clytia hemisphaericaexon
TCONS_00001230-exon-sc0000007-1510915933:1138765..1138812TCONS_00001230-exon-sc0000007-1510915933:1138765..1138812Clytia hemisphaericaexon
TCONS_00001230-exon-sc0000007-1510915933:1138480..1138647TCONS_00001230-exon-sc0000007-1510915933:1138480..1138647Clytia hemisphaericaexon
TCONS_00001230-exon-sc0000007-1510915933:1137666..1137802TCONS_00001230-exon-sc0000007-1510915933:1137666..1137802Clytia hemisphaericaexon
TCONS_00001230-exon-sc0000007-1510915933:1137340..1137447TCONS_00001230-exon-sc0000007-1510915933:1137340..1137447Clytia hemisphaericaexon
TCONS_00001230-exon-sc0000007-1510915933:1136849..1137209TCONS_00001230-exon-sc0000007-1510915933:1136849..1137209Clytia hemisphaericaexon
TCONS_00001230-exon-sc0000007-1491911889:1147551..1147707TCONS_00001230-exon-sc0000007-1491911889:1147551..1147707Clytia hemisphaericaexon
TCONS_00001230-exon-sc0000007-1491911889:1147213..1147356TCONS_00001230-exon-sc0000007-1491911889:1147213..1147356Clytia hemisphaericaexon
TCONS_00001230-exon-sc0000007-1491911889:1146533..1146645TCONS_00001230-exon-sc0000007-1491911889:1146533..1146645Clytia hemisphaericaexon
TCONS_00001230-exon-sc0000007-1491911889:1146360..1146399TCONS_00001230-exon-sc0000007-1491911889:1146360..1146399Clytia hemisphaericaexon
TCONS_00001230-exon-sc0000007-1491911889:1146129..1146197TCONS_00001230-exon-sc0000007-1491911889:1146129..1146197Clytia hemisphaericaexon
TCONS_00001230-exon-sc0000007-1491911889:1145570..1145649TCONS_00001230-exon-sc0000007-1491911889:1145570..1145649Clytia hemisphaericaexon
TCONS_00001230-exon-sc0000007-1491911889:1145206..1145293TCONS_00001230-exon-sc0000007-1491911889:1145206..1145293Clytia hemisphaericaexon
TCONS_00001230-exon-sc0000007-1491911889:1143435..1143537TCONS_00001230-exon-sc0000007-1491911889:1143435..1143537Clytia hemisphaericaexon
TCONS_00001230-exon-sc0000007-1491911889:1141386..1141618TCONS_00001230-exon-sc0000007-1491911889:1141386..1141618Clytia hemisphaericaexon
TCONS_00001230-exon-sc0000007-1491911889:1141089..1141184TCONS_00001230-exon-sc0000007-1491911889:1141089..1141184Clytia hemisphaericaexon
TCONS_00001230-exon-sc0000007-1491911889:1140241..1140303TCONS_00001230-exon-sc0000007-1491911889:1140241..1140303Clytia hemisphaericaexon
TCONS_00001230-exon-sc0000007-1491911889:1140002..1140100TCONS_00001230-exon-sc0000007-1491911889:1140002..1140100Clytia hemisphaericaexon
TCONS_00001230-exon-sc0000007-1491911889:1139822..1139875TCONS_00001230-exon-sc0000007-1491911889:1139822..1139875Clytia hemisphaericaexon
TCONS_00001230-exon-sc0000007-1491911889:1139532..1139635TCONS_00001230-exon-sc0000007-1491911889:1139532..1139635Clytia hemisphaericaexon
TCONS_00001230-exon-sc0000007-1491911889:1139169..1139254TCONS_00001230-exon-sc0000007-1491911889:1139169..1139254Clytia hemisphaericaexon
TCONS_00001230-exon-sc0000007-1491911889:1138935..1138999TCONS_00001230-exon-sc0000007-1491911889:1138935..1138999Clytia hemisphaericaexon
TCONS_00001230-exon-sc0000007-1491911889:1138765..1138812TCONS_00001230-exon-sc0000007-1491911889:1138765..1138812Clytia hemisphaericaexon
TCONS_00001230-exon-sc0000007-1491911889:1138480..1138647TCONS_00001230-exon-sc0000007-1491911889:1138480..1138647Clytia hemisphaericaexon
TCONS_00001230-exon-sc0000007-1491911889:1137666..1137802TCONS_00001230-exon-sc0000007-1491911889:1137666..1137802Clytia hemisphaericaexon
TCONS_00001230-exon-sc0000007-1491911889:1137340..1137447TCONS_00001230-exon-sc0000007-1491911889:1137340..1137447Clytia hemisphaericaexon
TCONS_00001230-exon-sc0000007-1491911889:1136849..1137209TCONS_00001230-exon-sc0000007-1491911889:1136849..1137209Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000007supercontigsc0000007:1136849..1147707 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.902705	0.193874	1.92727	0.37994	0.0889258	3.63248	0.496634	0.0656088	1.75125e-07	1.39998	1.15971	0.628623	0.528051	0.000161722	0.0686766	0.220691	0.980201	0.00369514	1.32972	0.33065	1.01992	0	0.0172018	6.89728e-05	3.48404	0.624252	0.00281359	3.52334e-06	0	1.1156
Blast
[Close]
BLAST of TCONS_00001230 vs. Swiss-Prot (Human)
Match: IF172 (Intraflagellar transport protein 172 homolog OS=Homo sapiens GN=IFT172 PE=1 SV=2)

HSP 1 Score: 1090.1 bits (2818), Expect = 0.000e+0
Identity = 510/761 (67.02%), Postives = 636/761 (83.57%), Query Frame = 2 
Query:  119 MQLKHLKTTLAPQDGAAKITAMAWAPNNTKMAIVSTDRVVVLFDEHGEKRDKFGTKPGDAKTGKKGYQVKGLAFSPDSTKIAVGQTDNIVFVYKIGDEWGERKVICNKFLQQSAVTCLVWPPENQYIIFGLADGKVRMASLKTNKSQTVYGTGIHCISLCVSPDGKGVLSGHADGAIVRYMFEDTGTGLTQGQVVKHGCPPYALCWGS-SIIAAGCDKRIVAYGKEGRVLQNFDYSKDDEEKEFTVAIASPSGQSVVVGSYDRLRVFNWSPRRGAWEESKPKEINNLYTISSLSWKRDGSRLCAGTLCGGVELFDCCLRRSIFKNKFEMTYVGLSQVIVKNLASGARVVLKSHYGYEIDEVKIMGKDRFLVGHTSETLLVGDLNENKLSELPWHNSGGNEKFFFENETVCMVFNAGELSLIEYGQNEVLATVRTEFMNPHLISVRLNERKLKDQEDNKKLGYLIDLKTICVMDLMSGMVVANISHDVKIDWLEMNETGXXXXXXXXXXXXXXADIQSETKTTISTYCSYVQWVPLSDVVVAQSRSDLCVWYNIESPERVTIVPIKGDITDLEKIEGKTNVIVQEGVQSINYTLDEGLIEFGTAMEDGDYARAVSFLEGLEMSPETEAMWKTLSKVAMENKELFIAERCFAALGDVSKARYLRGINDLIDELNPSY-GDPMYHPTIRAKLAIFEKQFKLAESIYLEQGQVDEAMEMYQEVHKWDESLAIAEAKRHPELENLRSYYLQYLMKSGQEEKAGEVK 2395
            M LKHL+T L+PQDGAAK+T MAW+ NN K A+ + DRVV+L+DEHGE+RDKF TKP D K G+K Y VKG+AFSPDSTKIA+GQTDNI++VYKIG++WG++KVICNKF+Q SAVTCL WP E   I+FGLA+GKVR+A+ KTNKS T+YGT  + +SL  +  GKG+LSGHADG IVRY F+D G+G +QG++V H CPPYAL W + SI+AAGCD++IVAYGKEG +LQ FDYS+D +E+EFT A++SP GQSVV+GSYDRLRVFNW PRR  WEE+KPKEI NLYTI++L+WKRDGSRLC GTLCGGVE FDCCLRRSI+KNKFE+TYVG SQVIVKNL+SG RVVLKSHYGYE++EVKI+GK+R+LV HTSETLL+GDLN N+LSE+ W  SGGNEK+FFENE VCM+FNAGEL+L+EYG N+ L +VRTEFMNPHLISVR+NER  +  EDNKKL YLID+KTI ++DL+ G  +  +SH+ ++DWLE+NETG KLLFRD+KLRL L DI+S +KT I  +CSY+QWVP SDV+VAQ+R+ LCVWYNIE+PERVT+  I+GD+  LE+  GKT V+V EGV ++ YTLDEGLIEFGTA++DG+Y RA +FLE LEM+PETEAMWKTLSK+A+E ++L IAERCF+ALG V+KAR+L   N++ D+++  Y G+      +RA+LA+ EK +KLAE I+LEQ  V+EAM MYQE+H+WDE +A+AEAK HP LE LR  Y Q+LM + QEE+AGE++
Sbjct:    1 MHLKHLRTLLSPQDGAAKVTCMAWSQNNAKFAVCTVDRVVLLYDEHGERRDKFSTKPADMKYGRKSYMVKGMAFSPDSTKIAIGQTDNIIYVYKIGEDWGDKKVICNKFIQTSAVTCLQWPAE-YIIVFGLAEGKVRLANTKTNKSSTIYGTESYVVSLTTNCSGKGILSGHADGTIVRYFFDDEGSGESQGKLVNHPCPPYALAWATNSIVAAGCDRKIVAYGKEGHMLQTFDYSRDPQEREFTTAVSSPGGQSVVLGSYDRLRVFNWIPRRSIWEEAKPKEITNLYTITALAWKRDGSRLCVGTLCGGVEQFDCCLRRSIYKNKFELTYVGPSQVIVKNLSSGTRVVLKSHYGYEVEEVKILGKERYLVAHTSETLLLGDLNTNRLSEIAWQGSGGNEKYFFENENVCMIFNAGELTLVEYGNNDTLGSVRTEFMNPHLISVRINERCQRGTEDNKKLAYLIDIKTIAIVDLIGGYNIGTVSHESRVDWLELNETGHKLLFRDRKLRLHLYDIESCSKTMILNFCSYMQWVPGSDVLVAQNRNSLCVWYNIEAPERVTMFTIRGDVIGLERGGGKTEVMVMEGVTTVAYTLDEGLIEFGTAIDDGNYIRATAFLETLEMTPETEAMWKTLSKLALEARQLHIAERCFSALGQVAKARFLHETNEIADQVSREYGGEGTDFYQVRARLAMLEKNYKLAEMIFLEQNAVEEAMGMYQELHRWDECIAVAEAKGHPALEKLRRSYYQWLMDTQQEERAGELQ 760
The following BLAST results are available for this feature:
BLAST of TCONS_00001230 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
IF1720.000e+067.02Intraflagellar transport protein 172 homolog OS=Ho... [more]
back to top